HHsearch alignment for GI: 254780875 and conserved domain: PRK11933
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=98.16 E-value=1.3e-06 Score=63.90 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=94.6
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHH
Q ss_conf 124686056642142112331222233-32100133322200244420110001222222222222---22210023332
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF---SSVEGLFDVIV 169 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~---~~~~~~fD~Iv 169 (264)
T Consensus 110 ~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n-~~vt~~d~~~~~~~~~~~FD~IL 188 (471)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPEMFDAIL 188 (471)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC-EEEEECCHHHHHHHCCCCCCEEE
T ss_conf 88999989995778548999999975899669998388999999999999719984-79993586674032301066799
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE---EECCCHHHHH-HHHHHHCCC
Q ss_conf 01133321001221111123575433210112321025689999985378878999---8176679999-999997898
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV---EIGYNQKVDV-VRIFESRKL 244 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l---Eig~~q~~~v-~~ll~~~gf 244 (264)
T Consensus 189 vDaPCSG~G~~rk~p~~~~~w~~~~~~----~~~~~Q~~iL~~A~~~LkpGG~LVYSTCT~~peENE~vv~~~l~~~p~ 263 (471)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNL----EIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYGD 263 (471)
T ss_pred ECCCCCCCEEECCCHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 878888873355597576418987999----999999999999998738896899981799956679999999986886