HHsearch alignment for GI: 254780875 and conserved domain: PRK13168

>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=99.30  E-value=1e-11  Score=97.58  Aligned_cols=158  Identities=23%  Similarity=0.317  Sum_probs=111.9

Q ss_pred             EEEEEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             23767750462051--2235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r   61 YNVRLTLSSDTFEP--RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK  138 (264)
Q Consensus        61 ~~~~f~v~~~vLIP--RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~  138 (264)
T Consensus       260 ~~~~~~~sp~sFfQvN~~~ae~L~~~a~~~l----~~~~~~~VlDLYcGvGtfsl~LA~~~--~~V~gvE~~~~av~~A~  333 (440)
T PRK13168        260 FGLRLAFSPTDFIQVNAQVNQKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVPAMVERAR  333 (440)
T ss_pred             CCEEEEECCCCEEEECHHHHHHHHHHHHHHH----CCCCCCEEEEEECCCCCCCHHHHHCC--CEEEEEECCHHHHHHHH
T ss_conf             7558767899878659999999999999985----26789889986238562111135306--76887605799999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCC------CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             20110001222222222222222------100233320113332100122111112357543321011232102568999
Q gi|254780875|r  139 SNAVTNGVSERFDTLQSDWFSSV------EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADG  212 (264)
Q Consensus       139 ~N~~~~~~~~~i~~~~~d~~~~~------~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~  212 (264)
T Consensus       334 ~Na~~n~i~n-~~f~~~d~~~~l~~~~~~~~~~D~vi~DPPR--------------------------~G~---~~~i~~  383 (440)
T PRK13168        334 ENARRNGLDN-VTFYHANLFEDFTDQPWAKGGFDKVLLDPPR--------------------------AGA---FEVMQA  383 (440)
T ss_pred             HHHHHCCCCC-CEEEECCHHHHHHHHHHHCCCCCEEEECCCC--------------------------CCH---HHHHHH
T ss_conf             9999749998-7899746456635578637999989999885--------------------------278---999999


Q ss_pred             HHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCCCC
Q ss_conf             99853788789998176-679999999997898058998-056899
Q gi|254780875|r  213 VSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYGGN  256 (264)
Q Consensus       213 ~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~g~  256 (264)
T Consensus       384 l~-~~~p~~IvYVSCnPaTlARDl-~~L~~~GY~l~~i~~vDmFP~  427 (440)
T PRK13168        384 LA-KLKPKRIVYVSCNPATLARDA-GVLVEAGYRLKRAGVLDMFPH  427 (440)
T ss_pred             HH-HCCCCEEEEECCCHHHHHHHH-HHHHHCCCEEEEEEEEECCCC
T ss_conf             98-479897999938989999999-999878948959999606999