HHsearch alignment for GI: 254780875 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=99.30 E-value=1e-11 Score=97.58 Aligned_cols=158 Identities=23% Similarity=0.317 Sum_probs=111.9
Q ss_pred EEEEEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 23767750462051--2235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 61 YNVRLTLSSDTFEP--RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 61 ~~~~f~v~~~vLIP--RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
T Consensus 260 ~~~~~~~sp~sFfQvN~~~ae~L~~~a~~~l----~~~~~~~VlDLYcGvGtfsl~LA~~~--~~V~gvE~~~~av~~A~ 333 (440)
T PRK13168 260 FGLRLAFSPTDFIQVNAQVNQKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVPAMVERAR 333 (440)
T ss_pred CCEEEEECCCCEEEECHHHHHHHHHHHHHHH----CCCCCCEEEEEECCCCCCCHHHHHCC--CEEEEEECCHHHHHHHH
T ss_conf 7558767899878659999999999999985----26789889986238562111135306--76887605799999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCC------CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 20110001222222222222222------100233320113332100122111112357543321011232102568999
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSSV------EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADG 212 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~~------~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~ 212 (264)
T Consensus 334 ~Na~~n~i~n-~~f~~~d~~~~l~~~~~~~~~~D~vi~DPPR--------------------------~G~---~~~i~~ 383 (440)
T PRK13168 334 ENARRNGLDN-VTFYHANLFEDFTDQPWAKGGFDKVLLDPPR--------------------------AGA---FEVMQA 383 (440)
T ss_pred HHHHHCCCCC-CEEEECCHHHHHHHHHHHCCCCCEEEECCCC--------------------------CCH---HHHHHH
T ss_conf 9999749998-7899746456635578637999989999885--------------------------278---999999
Q ss_pred HHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCCCC
Q ss_conf 99853788789998176-679999999997898058998-056899
Q gi|254780875|r 213 VSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYGGN 256 (264)
Q Consensus 213 ~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~g~ 256 (264)
T Consensus 384 l~-~~~p~~IvYVSCnPaTlARDl-~~L~~~GY~l~~i~~vDmFP~ 427 (440)
T PRK13168 384 LA-KLKPKRIVYVSCNPATLARDA-GVLVEAGYRLKRAGVLDMFPH 427 (440)
T ss_pred HH-HCCCCEEEEECCCHHHHHHHH-HHHHHCCCEEEEEEEEECCCC
T ss_conf 98-479897999938989999999-999878948959999606999