HHsearch alignment for GI: 254780875 and conserved domain: TIGR00406
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=99.72 E-value=2e-18 Score=141.72 Aligned_cols=144 Identities=29% Similarity=0.307 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 22356555310123321101246860566421421123312222333210013332220024442011000122222222
Q gi|254780875|r 75 RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQ 154 (264)
Q Consensus 75 RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~ 154 (264)
T Consensus 177 tH~TT~LCLe~L~~~---d~k~kh~~viD~GCGSGIL~IAa~~-LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~ 252 (330)
T TIGR00406 177 THPTTSLCLELLEDL---DLKDKHKKVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 252 (330)
T ss_pred CCHHHHHHHHHHHCC---CCCCCCCEEEEECCCHHHHHHHHHH-HHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 745789999987401---4777665478712671789999997-512311221377289999997687458864576432
Q ss_pred CC----CCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EECC
Q ss_conf 22----222221002333201133321001221111123575433210112321025689999985378878999-8176
Q gi|254780875|r 155 SD----WFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIGY 229 (264)
Q Consensus 155 ~d----~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig~ 229 (264)
T Consensus 253 ~~~vPe~~~~~e~~~DViVAN---iLA--------------------------~vi~~L~p~~~~L~~~~G~lilSGIl~ 303 (330)
T TIGR00406 253 ENSVPELEQPIEGKADVIVAN---ILA--------------------------EVIKELYPQFSRLVKPGGHLILSGILE 303 (330)
T ss_pred CCCCCCCCCCCCCCCCEEEEC---CHH--------------------------HHHHHHHHHHHHHCCCCCCEEEHHHHH
T ss_conf 057875345322566757880---024--------------------------578764135513106899657413476
Q ss_pred CHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 6799999999978980589980
Q gi|254780875|r 230 NQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 230 ~q~~~v~~ll~~~gf~~v~~~k 251 (264)
T Consensus 304 ~~~~sV~~ay~q~GF~~~~~~~ 325 (330)
T TIGR00406 304 TQAQSVCEAYEQAGFTVVEILK 325 (330)
T ss_pred HHHHHHHHHHHCCCCEEHHHHH
T ss_conf 4799999998557946343464