HHsearch alignment for GI: 254780875 and conserved domain: TIGR00406

>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=99.72  E-value=2e-18  Score=141.72  Aligned_cols=144  Identities=29%  Similarity=0.307  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             22356555310123321101246860566421421123312222333210013332220024442011000122222222
Q gi|254780875|r   75 RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQ  154 (264)
Q Consensus        75 RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~  154 (264)
T Consensus       177 tH~TT~LCLe~L~~~---d~k~kh~~viD~GCGSGIL~IAa~~-LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~  252 (330)
T TIGR00406       177 THPTTSLCLELLEDL---DLKDKHKKVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL  252 (330)
T ss_pred             CCHHHHHHHHHHHCC---CCCCCCCEEEEECCCHHHHHHHHHH-HHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             745789999987401---4777665478712671789999997-512311221377289999997687458864576432


Q ss_pred             CC----CCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EECC
Q ss_conf             22----222221002333201133321001221111123575433210112321025689999985378878999-8176
Q gi|254780875|r  155 SD----WFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIGY  229 (264)
Q Consensus       155 ~d----~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig~  229 (264)
T Consensus       253 ~~~vPe~~~~~e~~~DViVAN---iLA--------------------------~vi~~L~p~~~~L~~~~G~lilSGIl~  303 (330)
T TIGR00406       253 ENSVPELEQPIEGKADVIVAN---ILA--------------------------EVIKELYPQFSRLVKPGGHLILSGILE  303 (330)
T ss_pred             CCCCCCCCCCCCCCCCEEEEC---CHH--------------------------HHHHHHHHHHHHHCCCCCCEEEHHHHH
T ss_conf             057875345322566757880---024--------------------------578764135513106899657413476


Q ss_pred             CHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             6799999999978980589980
Q gi|254780875|r  230 NQKVDVVRIFESRKLFLVNAFK  251 (264)
Q Consensus       230 ~q~~~v~~ll~~~gf~~v~~~k  251 (264)
T Consensus       304 ~~~~sV~~ay~q~GF~~~~~~~  325 (330)
T TIGR00406       304 TQAQSVCEAYEQAGFTVVEILK  325 (330)
T ss_pred             HHHHHHHHHHHCCCCEEHHHHH
T ss_conf             4799999998557946343464