HHsearch alignment for GI: 254780875 and conserved domain: TIGR00417

>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=97.75  E-value=0.00017  Score=49.95  Aligned_cols=134  Identities=24%  Similarity=0.284  Sum_probs=96.5

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC-C---CCCCCCCCCCCCCC---C-----CC
Q ss_conf             46860566421421123312222333210013332220024442011000-1---22222222222222---2-----10
Q gi|254780875|r   96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG-V---SERFDTLQSDWFSS---V-----EG  163 (264)
Q Consensus        96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~-~---~~~i~~~~~d~~~~---~-----~~  163 (264)
T Consensus        74 ~NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~~fl~~~Gasdv~~  153 (284)
T TIGR00417        74 PNPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGFKFLRDTGASDVEK  153 (284)
T ss_pred             CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCCC
T ss_conf             98854789963888468788755981679999727478999888261210566588803589825179897615222212


Q ss_pred             HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECC--CH---HHHHHH
Q ss_conf             023332011333210012211111235754332101123210256899999853788789998-176--67---999999
Q gi|254780875|r  164 LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE-IGY--NQ---KVDVVR  237 (264)
Q Consensus       164 ~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE-ig~--~q---~~~v~~  237 (264)
T Consensus       154 ~fDVIIvD-----st-----DPv----GPa~~LF--------~~~Fy~~~~~aL~~~Gv~v~Qss~s~~~~~~~~~d~~r  211 (284)
T TIGR00417       154 KFDVIIVD-----ST-----DPV----GPAETLF--------TKEFYELLKKALNEDGVIVAQSSESPWLQLELIKDLKR  211 (284)
T ss_pred             CCCEEEEE-----CC-----CCC----CCCCCHH--------HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf             14479972-----77-----895----6554102--------17999999985299988998027884327488887888


Q ss_pred             HHHHCCCCEEEEEE
Q ss_conf             99978980589980
Q gi|254780875|r  238 IFESRKLFLVNAFK  251 (264)
Q Consensus       238 ll~~~gf~~v~~~k  251 (264)
T Consensus       212 ~~~~~~F~~~~~y~  225 (284)
T TIGR00417       212 KVKEVPFPITEYYT  225 (284)
T ss_pred             HHHHCCCCCCEEEE
T ss_conf             77526897530466