HHsearch alignment for GI: 254780875 and conserved domain: TIGR00417
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=97.75 E-value=0.00017 Score=49.95 Aligned_cols=134 Identities=24% Similarity=0.284 Sum_probs=96.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC-C---CCCCCCCCCCCCCC---C-----CC
Q ss_conf 46860566421421123312222333210013332220024442011000-1---22222222222222---2-----10
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG-V---SERFDTLQSDWFSS---V-----EG 163 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~-~---~~~i~~~~~d~~~~---~-----~~ 163 (264)
T Consensus 74 ~NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~~fl~~~Gasdv~~ 153 (284)
T TIGR00417 74 PNPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGFKFLRDTGASDVEK 153 (284)
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCCC
T ss_conf 98854789963888468788755981679999727478999888261210566588803589825179897615222212
Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECC--CH---HHHHHH
Q ss_conf 023332011333210012211111235754332101123210256899999853788789998-176--67---999999
Q gi|254780875|r 164 LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE-IGY--NQ---KVDVVR 237 (264)
Q Consensus 164 ~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE-ig~--~q---~~~v~~ 237 (264)
T Consensus 154 ~fDVIIvD-----st-----DPv----GPa~~LF--------~~~Fy~~~~~aL~~~Gv~v~Qss~s~~~~~~~~~d~~r 211 (284)
T TIGR00417 154 KFDVIIVD-----ST-----DPV----GPAETLF--------TKEFYELLKKALNEDGVIVAQSSESPWLQLELIKDLKR 211 (284)
T ss_pred CCCEEEEE-----CC-----CCC----CCCCCHH--------HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 14479972-----77-----895----6554102--------17999999985299988998027884327488887888
Q ss_pred HHHHCCCCEEEEEE
Q ss_conf 99978980589980
Q gi|254780875|r 238 IFESRKLFLVNAFK 251 (264)
Q Consensus 238 ll~~~gf~~v~~~k 251 (264)
T Consensus 212 ~~~~~~F~~~~~y~ 225 (284)
T TIGR00417 212 KVKEVPFPITEYYT 225 (284)
T ss_pred HHHHCCCCCCEEEE
T ss_conf 77526897530466