HHsearch alignment for GI: 254780875 and conserved domain: TIGR00675
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=93.21 E-value=0.19 Score=29.93 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=85.3
Q ss_pred EEEEECCCCCCCCCCCCCC-----CCCCCCCCCC--CCCCHHHHHHCCCCC-CC-CCCCC-CCCCCCCCCC-CCHHHHHH
Q ss_conf 5664214211233122223-----3321001333--222002444201100-01-22222-2222222222-10023332
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES-----PFFKGVGVDI--SCKALEIAKSNAVTN-GV-SERFD-TLQSDWFSSV-EGLFDVIV 169 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~-----~~~~v~~~Di--s~~al~~A~~N~~~~-~~-~~~i~-~~~~d~~~~~-~~~fD~Iv 169 (264)
T Consensus 1 ~idLFaGiGG~rlGfe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~~~~~~~~~DI~~i~~~~~~~~~~~Pd~D~L~ 80 (425)
T TIGR00675 1 VIDLFAGIGGIRLGFEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFGNDEKVPFGDITKISPSDLLRHIAIPDFDILL 80 (425)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 94542551357899997410141113788720166877899999976478842067763336601150012488678996
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE------EEECC---CHH-HHHHHHH
Q ss_conf 0113332100122111112357543321011232102568999998537887899------98176---679-9999999
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS------VEIGY---NQK-VDVVRIF 239 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~------lEig~---~q~-~~v~~ll 239 (264)
T Consensus 81 gGFPCQ~FS~AG~~~~-~~GF~d-----ED~RGtLFF-e~~Ril-K~KkP~~FllENVkgL~~hd~~~~G~Tf~vI~~~L 152 (425)
T TIGR00675 81 GGFPCQPFSIAGKRKG-ELGFED-----EDTRGTLFF-EIVRIL-KEKKPKFFLLENVKGLVSHDKSQRGRTFKVIIETL 152 (425)
T ss_pred CCCCCCHHHHHCCCCC-CCCCCC-----CCCCCCHHH-HHHHHH-HHCCCCEEEEECCCHHCCCCCCCCCCHHHHHHHHH
T ss_conf 3899713446411676-688656-----677775289-989999-85189578844361101788613452789999999
Q ss_pred HHCCCCEE-E-EE--ECCCCC----CEEEE
Q ss_conf 97898058-9-98--056899----75999
Q gi|254780875|r 240 ESRKLFLV-N-AF--KDYGGN----DRVLL 261 (264)
Q Consensus 240 ~~~gf~~v-~-~~--kD~~g~----~R~vi 261 (264)
T Consensus 153 e~lGY~v~~~~VLNa~dFGNvPQ~ReRiyI 182 (425)
T TIGR00675 153 EELGYKVEYKEVLNAKDFGNVPQNRERIYI 182 (425)
T ss_pred HHCCCEEEHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 873887733646616651787665058999