HHsearch alignment for GI: 254780875 and conserved domain: TIGR01177
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=96.56 E-value=0.0036 Score=41.33 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=99.6
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCC
Q ss_conf 75046205122356555310123321101246860566421421123312222333210013-33222002444201100
Q gi|254780875|r 66 TLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGV-DISCKALEIAKSNAVTN 144 (264)
Q Consensus 66 ~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~-Dis~~al~~A~~N~~~~ 144 (264)
T Consensus 181 ~~~p~~~~p~~~~-----~~~~~----~~~~~g~~~~dp~~g~gg~~~~~g--l~g~~~~g~gd~~~~~~~g~~~~l~~~ 249 (358)
T TIGR01177 181 FFKPGSLDPKLAR-----ALVNL----AGVKEGDRLLDPFCGTGGFLIEAG--LLGAKPIGCGDLDWKLVEGARLNLEHY 249 (358)
T ss_pred CCCCCCCCHHHHH-----HHHHH----HHCCCCCCEECCCCCCCCHHHHHH--HHCCCCCCCCHHHHHHHCCCHHHHHHC
T ss_conf 3256555546777-----77654----202467510042226660332333--321100024403567642521113330
Q ss_pred CCCCC-CCCCCCCCCC---CC-C--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 01222-2222222222---22-1--0023332011333210012211111235754332101123210256899999853
Q gi|254780875|r 145 GVSER-FDTLQSDWFS---SV-E--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHL 217 (264)
Q Consensus 145 ~~~~~-i~~~~~d~~~---~~-~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L 217 (264)
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~g~~~~~~~-----------------~~~~~l~~~~~~~~~~~~ 312 (358)
T TIGR01177 250 GIEDKVFSVKRGDAKDLPLRLPGLDESVDAIATDPPYGRSTTAAG-----------------DGLEELYEKSLEELHEVL 312 (358)
T ss_pred CCCCCEEEEEECCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC-----------------HHHHHHHHHHHHHHHHHH
T ss_conf 554315676403300111003531011222212565453111221-----------------036888888888888864
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 78878999817667999999999789805899
Q gi|254780875|r 218 NKDGLCSVEIGYNQKVDVVRIFESRKLFLVNA 249 (264)
Q Consensus 218 ~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~ 249 (264)
T Consensus 313 ~~~g~~~~~~~~--~~~~~~~~~~~g~~~~~~ 342 (358)
T TIGR01177 313 KGGGWLAVAVPT--DLDLESLAEGAGFKVVGR 342 (358)
T ss_pred CCCCCEEEEEEC--CCCHHHHHHHCCCHHHHH
T ss_conf 268717997403--346466541101012234