HHsearch alignment for GI: 254780875 and conserved domain: TIGR02081
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=98.50 E-value=3.2e-08 Score=74.52 Aligned_cols=78 Identities=26% Similarity=0.466 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC--------CCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 22356555310123321101246860566421421123312222333210--------0133322200244420110001
Q gi|254780875|r 75 RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKG--------VGVDISCKALEIAKSNAVTNGV 146 (264)
Q Consensus 75 RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v--------~~~Dis~~al~~A~~N~~~~~~ 146 (264)
T Consensus 1 R~Dl~~I~~~I----------p~GSRVLDLGCGdG~LL~~-L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~R----G- 64 (205)
T TIGR02081 1 RVDLELILDLI----------PPGSRVLDLGCGDGELLAL-LRDEKQVRGPPTTEHRLYGIEIDQDGVLACVAR----G- 64 (205)
T ss_pred CHHHHHHHHHC----------CCCCEEEEECCCCHHHHHH-HHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHC----C-
T ss_conf 91578898616----------8887364101688789999-997437898887120001023454459999862----5-
Q ss_pred CCCCCCCCCCCCCCC----CCHHHHHHHC
Q ss_conf 222222222222222----1002333201
Q gi|254780875|r 147 SERFDTLQSDWFSSV----EGLFDVIVSN 171 (264)
Q Consensus 147 ~~~i~~~~~d~~~~~----~~~fD~IvsN 171 (264)
T Consensus 65 ---v~VIq~Dld~GL~~F~D~~FD~ViLs 90 (205)
T TIGR02081 65 ---VSVIQGDLDEGLEAFPDKSFDYVILS 90 (205)
T ss_pred ---CCEECCCCCCCCCCCCCCCCCEEEEC
T ss_conf ---20130060034011678876625421