HHsearch alignment for GI: 254780875 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=98.11 E-value=1.8e-07 Score=69.61 Aligned_cols=83 Identities=24% Similarity=0.296 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCC-----CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 211012468605664214211233122-----223332100133322200244420110001222222222222222---
Q gi|254780875|r 90 LPRIEKRDVVRILDLGTGTGAVCLALL-----KESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV--- 161 (264)
Q Consensus 90 ~~~~~~~~~~~vLDlG~GsG~i~i~la-----~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~--- 161 (264)
T Consensus 230 r~WV~e~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~-~~F~aLDsa~f~~~~ 308 (386)
T TIGR02085 230 RQWVRELPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLEN-LSFAALDSAKFATAQ 308 (386)
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHH
T ss_conf 9999745711032010465412789989876415897044313437789999999998735332-104544579999862
Q ss_pred -CCHHHHHHHCCH
Q ss_conf -100233320113
Q gi|254780875|r 162 -EGLFDVIVSNPP 173 (264)
Q Consensus 162 -~~~fD~IvsNPP 173 (264)
T Consensus 309 ~e~~PeLVlVNPP 321 (386)
T TIGR02085 309 AESVPELVLVNPP 321 (386)
T ss_pred CCCCCCEEEECCC
T ss_conf 3688965776788