HHsearch alignment for GI: 254780875 and conserved domain: TIGR03533

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=100.00  E-value=0  Score=505.62  Aligned_cols=255  Identities=27%  Similarity=0.380  Sum_probs=235.0

Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHH
Q ss_conf             7568999999998389998985044885898999999999998974-983768536314423767750462051223565
Q gi|254780875|r    2 QALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLK-HESIHRILGWRDFYNVRLTLSSDTFEPRPETEL   80 (264)
Q Consensus         2 ~a~~dA~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~i~rr~~-g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~   80 (264)
T Consensus        28 ~prldAe~LLa~~L~~~r~~l~~~~~~~l~~~e~~~~~~lv~RR~~~r~Pl~YI~G~~~F~gl~f~V~~~VLIPR~~tee  107 (284)
T TIGR03533        28 NAWDEAVYLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAE  107 (284)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCEEEECCCCEECCCCCHH
T ss_conf             99999999999996959756776324889999999999999999827985899848656738478868995438997199


Q ss_pred             HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55310123321101246860566421421123312222333210013332220024442011000122222222222222
Q gi|254780875|r   81 LVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS  160 (264)
Q Consensus        81 lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~  160 (264)
T Consensus       108 Lv~~~l~~~---~~~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~  184 (284)
T TIGR03533       108 LIEDGFAPW---LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA  184 (284)
T ss_pred             HHHHHHHHH---HCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf             999999998---42367771555216807999999987899879999899999999999998608543368883514331


Q ss_pred             CCC-HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             210-0233320113332100122111112357543321011232102568999998537887899981766799999999
Q gi|254780875|r  161 VEG-LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIF  239 (264)
Q Consensus       161 ~~~-~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll  239 (264)
T Consensus       185 ~~~~~fDlIVSNPPYI~~~e~~~l~~ev~-~EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~lEiG~~Q-~~~~~~~  262 (284)
T TIGR03533       185 LPGRKYDLIVSNPPYVDAEDMADLPAEYH-HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAY  262 (284)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHHCCHHHC-CCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHC
T ss_conf             45777787997799788465544976411-586998758955879999999988984256978999979788-9999866


Q ss_pred             HHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf             9789805899805689975999979
Q gi|254780875|r  240 ESRKLFLVNAFKDYGGNDRVLLFCR  264 (264)
Q Consensus       240 ~~~gf~~v~~~kD~~g~~R~vi~~r  264 (264)
T Consensus       263 ~~~~~~~~~~~---~~~~~~~~~~~  284 (284)
T TIGR03533       263 PDVPFTWLEFE---NGGDGVFLLTR  284 (284)
T ss_pred             CCCCCEEEEEC---CCCCEEEEEEC
T ss_conf             89996477415---89836999849