HHsearch alignment for GI: 254780875 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=100.00 E-value=0 Score=543.02 Aligned_cols=250 Identities=39% Similarity=0.610 Sum_probs=240.9
Q ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99999999838999898504488589899999999999897498376853631442376775046205122356555310
Q gi|254780875|r 6 DSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSA 85 (264)
Q Consensus 6 dA~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~ 85 (264)
T Consensus 1 dae~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~g~PlqYI~g~~~F~~~~f~V~~~VLIPRpETE~Lve~~ 80 (251)
T TIGR03534 1 DAELLLAHVLGKDRTQLLLHPEKELTPEELARFEALVARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAA 80 (251)
T ss_pred CHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEEEEEECCEEEECCCHHHHHHHH
T ss_conf 98999999979099999648888899999999999999998699689950876898689997188786488339999999
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CH
Q ss_conf 12332110124686056642142112331222233321001333222002444201100012222222222222221-00
Q gi|254780875|r 86 LAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE-GL 164 (264)
Q Consensus 86 l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~-~~ 164 (264)
T Consensus 81 l~~~~-----~~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~-~v~~~~~d~~~~~~~~~ 154 (251)
T TIGR03534 81 LERLK-----KGPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLE-NVRFLKSDWFEPLPGGK 154 (251)
T ss_pred HHHHC-----CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCHHHCCCCCC
T ss_conf 99731-----4898699955671699999999679978999989879999999999980998-26865131432156898
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 23332011333210012211111235754332101123210256899999853788789998176679999999997898
Q gi|254780875|r 165 FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKL 244 (264)
Q Consensus 165 fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf 244 (264)
T Consensus 155 fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Eig~~q~~~v~~l~~~~gf 234 (251)
T TIGR03534 155 FDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEIGYDQGEAVRALFEAAGF 234 (251)
T ss_pred CCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCC
T ss_conf 66899789988745666328601026729997179846999999999999853679889999683789999999996899
Q ss_pred CEEEEEECCCCCCEEEE
Q ss_conf 05899805689975999
Q gi|254780875|r 245 FLVNAFKDYGGNDRVLL 261 (264)
Q Consensus 245 ~~v~~~kD~~g~~R~vi 261 (264)
T Consensus 235 ~~i~~~kDl~g~~R~ii 251 (251)
T TIGR03534 235 ADVETRKDLAGKDRVVL 251 (251)
T ss_pred CEEEEEECCCCCCCEEC
T ss_conf 70688507898976779