HHsearch alignment for GI: 254780875 and conserved domain: TIGR03587
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.54 E-value=1.4e-05 Score=57.12 Aligned_cols=104 Identities=25% Similarity=0.383 Sum_probs=67.9
Q ss_pred EEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 144237677504620512235655531012332110-1246860566421421123312222333210013332220024
Q gi|254780875|r 58 RDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRI-EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEI 136 (264)
Q Consensus 58 ~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~-~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~ 136 (264)
T Consensus 6 E~FWageFG~~---Yi~RN~~~~~~~sn~~~f~~~l~~~~~ikSilE~GcNIGlNL~ALk~L~P~~~l~gIEIN~~A~~~ 82 (204)
T TIGR03587 6 EQFWAGEFGKE---YIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK 82 (204)
T ss_pred HHHHHHHHCHH---HHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf 77750333668---777277347788899999999835788882689668847769999874874404999539999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHH
Q ss_conf 44201100012222222222222221-00233320
Q gi|254780875|r 137 AKSNAVTNGVSERFDTLQSDWFSSVE-GLFDVIVS 170 (264)
Q Consensus 137 A~~N~~~~~~~~~i~~~~~d~~~~~~-~~fD~Ivs 170 (264)
T Consensus 83 lk~~~~~------~~i~n~SIld~~~~~~~DLv~t 111 (204)
T TIGR03587 83 AKAYLPN------INIIQGSLFDPFKDNFFDLVLT 111 (204)
T ss_pred HHHHCCC------CEEEECCCCCCCCCCCEEEEEE
T ss_conf 9865897------2699653346677874238998