>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

Probab=97.19 E-value=0.0011 Score=44.59 Aligned_cols=141 Identities=21% Similarity=0.186 Sum_probs=81.9 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHCCH Q ss_conf 605664214211233122223332-10013332220024442011000122222222222222----2100233320113 Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKESPFF-KGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEGLFDVIVSNPP 173 (264) Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~~~~-~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~~fD~IvsNPP 173 (264) T Consensus 1 l~v~dLFsG~GG~s~Gl~~a--G~~~~~a~e~d~~a~~t~~~N~~~~-------~~~~Di~~~~~~~~~~~vDll~ggpP 71 (275) T cd00315 1 LRVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275) T ss_pred CCEEEECCCCCHHHHHHHHC--CCEEEEEEECCHHHHHHHHHHCCCC-------CCCCCHHHCCCCCCCCCCCEEEECCC T ss_conf 95999767807899999986--9989999968999999999887999-------52588644653213788788986899 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--C------CCHHHHHHHHHHHCCCC Q ss_conf 332100122111112357543321011232102568999998537887899981--7------66799999999978980 Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--G------YNQKVDVVRIFESRKLF 245 (264) Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g------~~q~~~v~~ll~~~gf~ 245 (264) T Consensus 72 CQ~fS~ag~-~~~--~~d~r~~L---------~~~~~~~i-~~~~P~-~~~~ENV~~~~~~~~~~~~~~i~~~l~~~GY~ 137 (275) T cd00315 72 CQPFSIAGK-RKG--FEDTRGTL---------FFEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN 137 (275) T ss_pred CCCCCCCCC-CCC--CCCCCCHH---------HHHHHHHH-HHHCCC-EEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCE T ss_conf 987354786-388--65640168---------99999999-876885-88276376687523560789999999867982 Q ss_pred EEEEE---ECC---CCCCEEEEE Q ss_conf 58998---056---899759999 Q gi|254780875|r 246 LVNAF---KDY---GGNDRVLLF 262 (264) Q Consensus 246 ~v~~~---kD~---~g~~R~vi~ 262 (264) T Consensus 138 ~~~~vl~a~~~GvPQ~R~R~fiv 160 (275) T cd00315 138 VYWKLLNASDYGVPQNRERVFII 160 (275) T ss_pred EEEEEECHHHCCCCCCCCEEEEE T ss_conf 02778679997999776189999

HHsearch alignment for GI: 254780875 and conserved domain: cd00315