Query gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 264
No_of_seqs 181 out of 7138
Neff 6.8
Searched_HMMs 39220
Date Mon May 30 00:29:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780875.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01544 bifunctional N5-gluta 100.0 0 0 587.2 12.9 262 2-263 23-302 (503)
2 PRK09328 N5-glutamine S-adenos 100.0 0 0 558.7 16.6 255 2-263 19-274 (277)
3 PRK09329 N5-glutamine S-adenos 100.0 0 0 545.1 14.5 254 2-264 19-273 (285)
4 TIGR03534 RF_mod_HemK protein- 100.0 0 0 543.0 14.5 250 6-261 1-251 (251)
5 TIGR03533 L3_gln_methyl protei 100.0 0 0 505.6 13.8 255 2-264 28-284 (284)
6 PRK11805 N5-glutamine S-adenos 100.0 0 0 486.3 13.7 253 2-263 40-295 (307)
7 COG2890 HemK Methylase of poly 100.0 0 0 445.3 14.7 256 2-264 20-276 (280)
8 KOG2904 consensus 100.0 0 0 387.9 10.7 260 3-264 54-327 (328)
9 TIGR00536 hemK_fam methyltrans 100.0 2.4E-39 6.2E-44 279.4 6.5 262 2-263 27-306 (311)
10 TIGR00537 hemK_rel_arch methyl 99.9 8.6E-26 2.2E-30 190.2 5.7 159 72-246 2-164 (183)
11 pfam05175 MTS Methyltransferas 99.9 2E-25 5.2E-30 187.7 4.5 158 62-252 1-162 (170)
12 COG4123 Predicted O-methyltran 99.9 3.4E-23 8.7E-28 173.1 7.6 185 60-262 15-209 (248)
13 PRK09489 rsmC 16S ribosomal RN 99.8 1.6E-21 4.2E-26 162.0 5.2 136 62-228 166-304 (342)
14 COG2813 RsmC 16S RNA G1207 met 99.8 3.5E-21 9E-26 159.8 6.1 138 61-228 127-267 (300)
15 KOG3191 consensus 99.8 2.8E-21 7.1E-26 160.5 5.2 186 69-262 16-204 (209)
16 PRK00517 prmA ribosomal protei 99.7 1.2E-17 3E-22 136.7 7.5 125 96-251 161-286 (298)
17 TIGR00406 prmA ribosomal prote 99.7 2E-18 5.1E-23 141.7 2.8 144 75-251 177-325 (330)
18 COG2264 PrmA Ribosomal protein 99.7 1.9E-17 4.9E-22 135.2 7.5 127 96-252 161-289 (300)
19 pfam06325 PrmA Ribosomal prote 99.7 3.7E-17 9.4E-22 133.4 6.7 123 96-251 159-282 (294)
20 PRK00216 ubiE ubiquinone/menaq 99.6 9.2E-16 2.3E-20 124.2 9.1 144 95-264 49-238 (239)
21 TIGR01983 UbiG ubiquinone bios 99.6 2.4E-16 6E-21 128.1 4.9 156 69-256 49-255 (275)
22 pfam05971 Methyltransf_10 Prot 99.6 5E-15 1.3E-19 119.4 8.6 201 59-262 24-249 (254)
23 pfam01170 UPF0020 Putative RNA 99.6 6.9E-16 1.8E-20 125.0 3.9 145 79-250 14-161 (171)
24 pfam01209 Ubie_methyltran ubiE 99.6 7.4E-15 1.9E-19 118.2 8.9 143 95-264 45-233 (233)
25 PRK11727 putative SAM-dependen 99.6 7.8E-15 2E-19 118.1 9.0 204 59-263 73-311 (326)
26 smart00828 PKS_MT Methyltransf 99.6 1.9E-15 4.9E-20 122.1 5.8 124 100-249 2-142 (224)
27 PRK05134 3-demethylubiquinone- 99.6 3E-15 7.6E-20 120.8 5.4 125 95-249 46-203 (233)
28 PRK11873 arsM arsenite S-adeno 99.6 4.5E-15 1.1E-19 119.6 6.3 131 94-251 70-226 (258)
29 PRK01683 trans-aconitate 2-met 99.5 3.1E-15 7.8E-20 120.7 3.9 116 93-240 27-143 (252)
30 PRK08287 cobalt-precorrin-6Y C 99.5 5.5E-14 1.4E-18 112.5 7.2 148 65-249 5-153 (186)
31 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.7E-14 4.3E-19 115.9 4.3 139 92-256 38-234 (242)
32 PRK07580 Mg-protoporphyrin IX 99.5 1.2E-13 3E-18 110.3 6.5 109 43-171 26-134 (230)
33 PRK08317 hypothetical protein; 99.5 2E-13 5E-18 108.8 7.0 130 93-250 15-175 (241)
34 PRK07402 precorrin-6B methylas 99.4 3.8E-13 9.7E-18 106.9 7.8 132 92-251 35-167 (196)
35 pfam02475 Met_10 Met-10+ like- 99.4 1.3E-13 3.3E-18 110.0 3.9 124 61-224 70-198 (199)
36 PRK11036 putative metallothion 99.4 1.5E-13 3.9E-18 109.5 4.2 132 96-257 43-218 (256)
37 pfam09445 Methyltransf_15 RNA 99.4 2.5E-13 6.4E-18 108.2 4.7 143 100-258 3-156 (165)
38 cd02440 AdoMet_MTases S-adenos 99.4 1.4E-13 3.6E-18 109.8 2.9 100 100-226 1-103 (107)
39 PRK00377 cbiT cobalt-precorrin 99.4 1E-12 2.7E-17 104.1 7.3 145 68-245 18-164 (198)
40 PTZ00098 phosphoethanolamine N 99.4 6.3E-13 1.6E-17 105.5 5.5 132 94-254 49-204 (263)
41 TIGR02072 BioC biotin biosynth 99.4 6.2E-13 1.6E-17 105.6 4.3 104 95-225 34-145 (272)
42 COG2226 UbiE Methylase involve 99.3 3.4E-12 8.6E-17 100.7 7.5 106 96-228 50-158 (238)
43 pfam02353 CMAS Cyclopropane-fa 99.3 3.2E-13 8.1E-18 107.5 2.2 113 88-226 53-165 (273)
44 PRK03522 rumB 23S rRNA methylu 99.3 3.3E-12 8.4E-17 100.8 7.0 158 58-254 196-360 (375)
45 PRK10909 rsmD 16S rRNA m(2)G96 99.3 4.2E-13 1.1E-17 106.7 2.3 167 59-264 18-189 (198)
46 COG2227 UbiG 2-polyprenyl-3-me 99.3 5.3E-13 1.4E-17 106.0 2.7 100 96-225 58-159 (243)
47 pfam02384 N6_Mtase N-6 DNA Met 99.3 7E-12 1.8E-16 98.6 7.6 160 72-244 29-207 (312)
48 PRK13168 rumA 23S rRNA 5-methy 99.3 1E-11 2.6E-16 97.6 7.8 158 61-256 260-427 (440)
49 COG2230 Cfa Cyclopropane fatty 99.3 2E-12 5.1E-17 102.2 3.8 141 54-225 34-174 (283)
50 TIGR02021 BchM-ChlM magnesium 99.3 8.4E-13 2.1E-17 104.7 1.0 89 79-170 37-126 (224)
51 pfam08704 GCD14 tRNA methyltra 99.2 1.1E-11 2.9E-16 97.2 5.6 170 49-251 43-233 (309)
52 COG1092 Predicted SAM-dependen 99.2 1.1E-11 2.9E-16 97.2 5.6 175 51-248 168-363 (393)
53 pfam10672 Methyltrans_SAM S-ad 99.2 4.4E-12 1.1E-16 99.9 3.5 168 44-243 68-256 (286)
54 pfam03602 Cons_hypoth95 Conser 99.2 7.9E-12 2E-16 98.3 4.6 166 59-262 7-180 (181)
55 COG2519 GCD14 tRNA(1-methylade 99.2 7.9E-12 2E-16 98.3 4.6 128 92-250 89-219 (256)
56 COG2242 CobL Precorrin-6B meth 99.2 3.9E-11 9.9E-16 93.7 7.7 146 64-245 8-154 (187)
57 KOG1270 consensus 99.2 4.9E-12 1.3E-16 99.6 2.8 99 98-225 90-193 (282)
58 COG2263 Predicted RNA methylas 99.2 2E-11 5.2E-16 95.6 5.9 125 95-250 43-167 (198)
59 PRK10258 biotin biosynthesis p 99.2 1.1E-11 2.9E-16 97.2 4.4 111 96-240 41-154 (251)
60 pfam08242 Methyltransf_12 Meth 99.2 2.8E-12 7.2E-17 101.2 0.3 96 102-223 1-98 (98)
61 KOG1271 consensus 99.2 6E-11 1.5E-15 92.5 6.1 164 54-251 37-205 (227)
62 TIGR02469 CbiT precorrin-6Y C5 99.1 3.7E-11 9.4E-16 93.9 4.1 116 92-226 14-132 (135)
63 COG0742 N6-adenine-specific me 99.1 3.4E-11 8.8E-16 94.1 3.9 172 59-263 8-184 (187)
64 PRK11207 tellurite resistance 99.1 3.5E-11 8.9E-16 94.0 3.2 128 62-226 5-133 (198)
65 KOG2187 consensus 99.1 3.8E-11 9.7E-16 93.8 3.2 158 48-240 332-504 (534)
66 COG2265 TrmA SAM-dependent met 99.1 1.5E-10 3.9E-15 89.8 6.1 148 62-246 260-415 (432)
67 TIGR00479 rumA 23S rRNA (uraci 99.1 3.2E-10 8.1E-15 87.7 7.6 169 46-250 233-421 (434)
68 COG0116 Predicted N6-adenine-s 99.1 5.1E-11 1.3E-15 92.9 3.4 131 76-229 174-345 (381)
69 COG1041 Predicted DNA modifica 99.1 2E-10 5E-15 89.1 6.3 143 95-261 195-342 (347)
70 pfam10294 Methyltransf_16 Puta 99.1 1.5E-10 3.8E-15 89.9 5.4 137 76-240 23-166 (171)
71 PRK05031 tRNA (uracil-5-)-meth 99.1 3.2E-11 8.1E-16 94.3 1.3 162 62-264 175-362 (363)
72 PRK11783 rlmL 23S rRNA m(2)G24 99.1 2E-10 5E-15 89.1 5.2 215 5-257 474-705 (716)
73 KOG2912 consensus 99.1 8.5E-10 2.2E-14 84.9 8.3 200 61-262 64-287 (419)
74 pfam08241 Methyltransf_11 Meth 99.0 7.3E-11 1.9E-15 91.9 1.6 93 102-225 1-95 (95)
75 pfam05958 tRNA_U5-meth_tr tRNA 99.0 7.3E-11 1.9E-15 91.9 1.3 154 62-256 165-340 (353)
76 PRK00107 gidB glucose-inhibite 99.0 1.5E-08 3.9E-13 76.6 12.4 195 23-263 10-211 (216)
77 COG0286 HsdM Type I restrictio 99.0 5.8E-10 1.5E-14 86.0 4.3 183 71-263 168-373 (489)
78 PRK06202 hypothetical protein; 99.0 9.7E-11 2.5E-15 91.1 0.2 75 95-171 59-137 (233)
79 KOG1540 consensus 99.0 7.4E-10 1.9E-14 85.3 4.6 110 93-228 96-216 (296)
80 KOG2899 consensus 98.9 3.6E-10 9.1E-15 87.4 2.6 114 95-228 56-210 (288)
81 COG4106 Tam Trans-aconitate me 98.9 1.3E-09 3.3E-14 83.7 5.0 120 74-234 16-136 (257)
82 pfam03848 TehB Tellurite resis 98.9 6.7E-10 1.7E-14 85.6 3.3 105 95-227 28-133 (192)
83 PRK11705 cyclopropane fatty ac 98.9 4.3E-10 1.1E-14 86.9 2.0 109 88-226 158-266 (383)
84 pfam01135 PCMT Protein-L-isoas 98.9 1E-09 2.6E-14 84.4 3.2 132 61-232 44-178 (205)
85 PRK13944 protein-L-isoaspartat 98.8 1.6E-09 4E-14 83.2 3.1 134 59-231 41-177 (205)
86 pfam01596 Methyltransf_3 O-met 98.8 1E-09 2.6E-14 84.4 1.7 102 95-225 42-152 (204)
87 COG2520 Predicted methyltransf 98.8 1.5E-08 3.7E-13 76.8 7.6 157 61-256 158-329 (341)
88 TIGR00091 TIGR00091 tRNA (guan 98.8 1.2E-08 3.2E-13 77.2 7.1 145 96-257 18-180 (216)
89 COG4122 Predicted O-methyltran 98.8 1.3E-09 3.2E-14 83.8 1.8 114 76-225 45-164 (219)
90 PRK10901 16S rRNA methyltransf 98.7 4E-08 1E-12 73.9 6.1 145 94-248 242-399 (428)
91 KOG3420 consensus 98.7 2E-09 5.1E-14 82.5 -0.8 79 94-175 45-125 (185)
92 KOG1499 consensus 98.7 3.9E-09 1E-13 80.5 0.6 104 96-224 59-164 (346)
93 PRK00312 pcm protein-L-isoaspa 98.7 1.6E-08 4E-13 76.6 3.6 128 61-230 49-178 (213)
94 TIGR00755 ksgA dimethyladenosi 98.7 4E-09 1E-13 80.5 0.6 101 61-178 7-117 (277)
95 PRK13942 protein-L-isoaspartat 98.7 9.5E-09 2.4E-13 78.0 2.4 128 62-229 48-178 (214)
96 KOG2915 consensus 98.7 4.4E-08 1.1E-12 73.6 5.7 177 45-254 42-238 (314)
97 COG2521 Predicted archaeal met 98.7 2E-08 5.1E-13 75.9 3.9 134 95-252 132-278 (287)
98 COG4976 Predicted methyltransf 98.7 3.6E-08 9.2E-13 74.2 5.1 122 94-251 122-265 (287)
99 PTZ00338 dimethyladenosine tra 98.6 4.8E-09 1.2E-13 79.9 -0.1 102 61-178 16-118 (296)
100 COG3129 Predicted SAM-dependen 98.6 2E-08 5.1E-13 75.9 2.9 118 59-178 36-167 (292)
101 pfam02527 GidB rRNA small subu 98.6 9.2E-08 2.4E-12 71.5 6.0 133 97-261 48-184 (184)
102 TIGR02987 met_A_Alw26 type II 98.6 4.6E-08 1.2E-12 73.5 4.4 178 78-255 13-262 (603)
103 PRK11783 rlmL 23S rRNA m(2)G24 98.6 6.5E-09 1.6E-13 79.1 -0.3 76 99-174 196-317 (716)
104 PRK12335 tellurite resistance 98.6 3.7E-08 9.4E-13 74.1 3.3 128 61-225 89-223 (289)
105 PRK04457 spermidine synthase; 98.6 3E-07 7.6E-12 68.2 7.9 146 96-264 65-216 (262)
106 smart00138 MeTrc Methyltransfe 98.6 2.5E-08 6.3E-13 75.3 2.2 125 80-228 82-243 (264)
107 pfam07021 MetW Methionine bios 98.6 1.7E-08 4.4E-13 76.3 1.2 78 75-171 1-82 (193)
108 pfam06080 DUF938 Protein of un 98.6 2.7E-07 6.8E-12 68.5 7.3 142 98-264 26-201 (201)
109 pfam05401 NodS Nodulation prot 98.5 4.7E-08 1.2E-12 73.4 3.1 120 95-242 41-171 (201)
110 PRK00121 trmB tRNA (guanine-N( 98.5 1.6E-07 4.1E-12 69.9 5.5 133 98-249 55-194 (229)
111 COG0357 GidB Predicted S-adeno 98.5 2.5E-07 6.4E-12 68.7 6.4 187 28-262 14-209 (215)
112 KOG1541 consensus 98.5 2.5E-07 6.4E-12 68.6 6.1 140 82-246 37-182 (270)
113 TIGR02081 metW methionine bios 98.5 3.2E-08 8.2E-13 74.5 1.4 78 75-171 1-90 (205)
114 COG1352 CheR Methylase of chem 98.5 6.5E-08 1.7E-12 72.5 2.7 123 80-227 80-241 (268)
115 PRK05785 hypothetical protein; 98.5 8.1E-07 2.1E-11 65.3 7.9 153 96-264 50-223 (225)
116 pfam02390 Methyltransf_4 Putat 98.5 2E-07 5.1E-12 69.3 4.6 140 96-254 19-167 (199)
117 KOG3010 consensus 98.5 1.2E-07 3.1E-12 70.7 3.4 102 100-230 36-139 (261)
118 PRK10611 chemotaxis methyltran 98.5 5.7E-07 1.4E-11 66.3 6.6 111 95-229 113-264 (287)
119 pfam04816 DUF633 Family of unk 98.4 1.7E-07 4.4E-12 69.7 3.9 118 101-247 1-120 (204)
120 KOG2361 consensus 98.4 2.5E-07 6.4E-12 68.6 4.7 168 51-249 29-235 (264)
121 COG2518 Pcm Protein-L-isoaspar 98.4 8.7E-08 2.2E-12 71.7 2.3 143 45-231 29-173 (209)
122 PRK11088 rrmA 23S rRNA methylt 98.4 2E-07 5.2E-12 69.3 4.1 107 96-241 84-196 (272)
123 KOG4300 consensus 98.4 6.1E-07 1.6E-11 66.1 5.4 168 31-239 23-195 (252)
124 COG0030 KsgA Dimethyladenosine 98.4 6E-08 1.5E-12 72.7 0.1 100 60-178 7-110 (259)
125 KOG1500 consensus 98.4 1.9E-07 4.7E-12 69.5 2.3 109 94-229 174-284 (517)
126 pfam01739 CheR CheR methyltran 98.3 2.1E-07 5.3E-12 69.2 2.3 111 94-228 27-174 (194)
127 PRK13943 protein-L-isoaspartat 98.3 1.2E-07 3E-12 70.8 0.6 89 93-182 71-164 (317)
128 COG2384 Predicted SAM-dependen 98.3 1.1E-06 2.7E-11 64.6 5.4 120 99-247 18-139 (226)
129 COG0220 Predicted S-adenosylme 98.3 3.3E-07 8.4E-12 67.9 2.7 115 96-229 47-166 (227)
130 pfam08003 Methyltransf_9 Prote 98.3 1.6E-06 4E-11 63.4 6.0 181 25-251 59-267 (315)
131 TIGR00095 TIGR00095 putative m 98.2 4.2E-07 1.1E-11 67.2 1.9 149 59-230 19-180 (210)
132 pfam01189 Nol1_Nop2_Fmu NOL1/N 98.2 1.7E-06 4.2E-11 63.3 4.7 145 94-247 81-239 (277)
133 KOG2730 consensus 98.2 4.3E-07 1.1E-11 67.1 1.7 116 37-174 54-175 (263)
134 pfam00398 RrnaAD Ribosomal RNA 98.2 2.5E-07 6.4E-12 68.7 -0.2 99 58-175 5-105 (258)
135 TIGR00138 gidB methyltransfera 98.2 3.1E-06 7.8E-11 61.5 5.3 134 98-262 50-194 (197)
136 PRK00274 ksgA dimethyladenosin 98.2 2.7E-07 6.9E-12 68.4 -0.2 93 60-175 16-113 (267)
137 PRK11933 yebU rRNA (cytosine-C 98.2 1.3E-06 3.4E-11 63.9 3.1 146 94-244 110-263 (471)
138 KOG0820 consensus 98.2 4.3E-07 1.1E-11 67.1 0.5 89 81-175 46-134 (315)
139 TIGR00477 tehB tellurite resis 98.2 7.2E-07 1.8E-11 65.6 1.6 104 94-224 70-174 (239)
140 TIGR02085 meth_trns_rumB 23S r 98.1 1.8E-07 4.6E-12 69.6 -2.3 83 90-173 230-321 (386)
141 PRK00811 spermidine synthase; 98.1 7E-06 1.8E-10 59.2 5.7 189 48-264 30-239 (283)
142 pfam00891 Methyltransf_2 O-met 98.1 2.1E-06 5.4E-11 62.6 3.0 159 31-227 34-199 (239)
143 PRK03612 spermidine synthase; 98.1 1.2E-05 3E-10 57.7 6.7 173 47-247 245-436 (516)
144 PRK11188 rrmJ 23S rRNA methylt 98.1 1.7E-05 4.2E-10 56.7 7.1 139 96-263 50-205 (209)
145 TIGR02752 MenG_heptapren 2-hep 98.0 1.8E-06 4.6E-11 63.0 1.7 106 93-225 41-149 (231)
146 pfam01564 Spermine_synth Sperm 98.0 9.8E-06 2.5E-10 58.2 5.3 173 48-250 27-216 (240)
147 smart00650 rADc Ribosomal RNA 98.0 8.8E-07 2.2E-11 65.1 -0.2 80 94-178 10-92 (169)
148 PHA02056 putative methyltransf 98.0 1.4E-06 3.5E-11 63.8 0.7 126 98-244 65-207 (279)
149 pfam02005 TRM N2,N2-dimethylgu 98.0 3.5E-06 8.8E-11 61.2 2.6 85 94-178 46-139 (375)
150 pfam01728 FtsJ FtsJ-like methy 98.0 4.1E-05 1.1E-09 54.1 7.9 138 97-263 21-174 (176)
151 KOG2671 consensus 98.0 5.2E-06 1.3E-10 60.0 3.1 126 95-225 206-352 (421)
152 PRK06922 hypothetical protein; 98.0 8.5E-06 2.2E-10 58.6 4.1 118 97-229 420-541 (679)
153 TIGR02143 trmA_only tRNA (urac 97.9 2E-06 5E-11 62.8 0.4 127 26-159 116-262 (361)
154 pfam05219 DREV DREV methyltran 97.9 2.7E-05 6.9E-10 55.3 6.2 119 96-250 93-239 (265)
155 COG0144 Sun tRNA and rRNA cyto 97.9 6.3E-06 1.6E-10 59.4 2.8 165 70-248 136-314 (355)
156 TIGR00080 pimt protein-L-isoas 97.9 1.1E-06 2.9E-11 64.3 -1.3 130 95-260 80-218 (228)
157 COG4076 Predicted RNA methylas 97.9 5.3E-06 1.4E-10 59.9 2.1 70 99-171 34-103 (252)
158 PRK04338 N(2),N(2)-dimethylgua 97.9 7.4E-06 1.9E-10 59.0 2.6 82 96-178 50-139 (376)
159 pfam12147 Hydrolase_5 Putative 97.9 4.3E-05 1.1E-09 53.9 6.5 199 40-264 58-311 (311)
160 TIGR00740 TIGR00740 methyltran 97.8 1.4E-05 3.6E-10 57.1 3.1 106 96-225 60-167 (247)
161 pfam03291 Pox_MCEL mRNA cappin 97.8 1.4E-05 3.5E-10 57.2 2.7 120 96-240 62-198 (327)
162 TIGR02716 C20_methyl_CrtF C-20 97.8 1.9E-05 4.9E-10 56.3 3.2 168 52-249 101-304 (306)
163 pfam03059 NAS Nicotianamine sy 97.8 3.5E-05 8.9E-10 54.6 4.5 140 98-264 122-272 (277)
164 pfam01861 DUF43 Protein of unk 97.8 8.3E-06 2.1E-10 58.6 1.2 131 96-256 43-183 (243)
165 pfam05724 TPMT Thiopurine S-me 97.8 9.3E-06 2.4E-10 58.3 1.4 125 93-245 18-169 (203)
166 TIGR00417 speE spermidine synt 97.7 0.00017 4.5E-09 50.0 7.8 134 96-251 74-225 (284)
167 KOG1663 consensus 97.7 2E-05 5.1E-10 56.2 2.3 101 96-225 72-181 (237)
168 TIGR00438 rrmJ ribosomal RNA l 97.7 7.4E-05 1.9E-09 52.4 5.1 143 95-264 30-191 (192)
169 pfam05148 Methyltransf_8 Hypot 97.7 9.3E-05 2.4E-09 51.7 5.6 113 96-256 66-183 (214)
170 COG3897 Predicted methyltransf 97.7 7.3E-06 1.9E-10 59.0 -0.2 100 95-225 77-176 (218)
171 COG1867 TRM1 N2,N2-dimethylgua 97.7 3.5E-05 8.8E-10 54.6 3.2 81 98-179 53-141 (380)
172 COG0421 SpeE Spermidine syntha 97.6 5.4E-05 1.4E-09 53.3 3.7 152 49-228 29-191 (282)
173 PRK01544 bifunctional N5-gluta 97.6 0.00012 3.1E-09 51.0 5.0 139 95-254 342-487 (503)
174 TIGR03587 Pse_Me-ase pseudamin 97.5 1.4E-05 3.6E-10 57.1 -0.3 104 58-170 6-111 (204)
175 pfam09243 Rsm22 Mitochondrial 97.5 0.00019 4.9E-09 49.7 4.8 140 82-248 19-166 (275)
176 pfam06962 rRNA_methylase Putat 97.5 0.00016 4.1E-09 50.2 4.3 104 123-243 1-114 (140)
177 TIGR03439 methyl_EasF probable 97.3 0.00019 4.7E-09 49.8 3.4 83 74-159 56-143 (319)
178 TIGR03438 probable methyltrans 97.3 0.00016 4E-09 50.3 3.0 133 73-227 42-177 (301)
179 PRK13255 thiopurine S-methyltr 97.3 0.00017 4.4E-09 50.0 3.0 138 94-258 34-199 (218)
180 pfam05891 Hydroxy-O-Methy Puta 97.2 0.00098 2.5E-08 45.0 6.0 136 96-258 54-206 (217)
181 pfam00145 DNA_methylase C-5 cy 97.2 0.001 2.6E-08 44.9 6.0 140 99-262 1-158 (319)
182 cd00315 Cyt_C5_DNA_methylase C 97.2 0.0011 2.9E-08 44.6 6.1 141 99-262 1-160 (275)
183 KOG2940 consensus 97.1 0.00036 9.2E-09 47.9 2.7 148 96-252 71-228 (325)
184 KOG1661 consensus 97.1 0.00048 1.2E-08 47.0 3.1 104 95-230 80-196 (237)
185 PRK01581 speE spermidine synth 97.0 0.00037 9.5E-09 47.8 2.5 177 44-248 80-283 (363)
186 TIGR00452 TIGR00452 methyltran 96.9 0.0023 5.8E-08 42.6 5.7 184 23-251 63-275 (316)
187 KOG1975 consensus 96.9 0.0012 3E-08 44.5 4.2 122 96-242 116-250 (389)
188 PRK04266 fibrillarin; Provisio 96.9 0.0077 2E-07 39.1 8.0 137 92-264 67-225 (226)
189 PRK13699 putative methylase; P 96.9 0.0014 3.6E-08 44.0 4.1 42 98-141 164-205 (227)
190 pfam07942 N2227 N2227-like pro 96.8 0.0028 7E-08 42.1 5.6 44 94-139 54-97 (268)
191 TIGR00563 rsmB ribosomal RNA s 96.8 0.003 7.6E-08 41.8 5.3 142 69-225 250-406 (487)
192 KOG3045 consensus 96.8 0.0048 1.2E-07 40.5 6.2 121 82-255 168-293 (325)
193 pfam08123 DOT1 Histone methyla 96.8 0.00018 4.6E-09 49.9 -1.1 77 95-171 40-129 (205)
194 COG3963 Phospholipid N-methylt 96.7 0.00086 2.2E-08 45.4 2.3 128 63-228 22-158 (194)
195 KOG3201 consensus 96.7 0.00062 1.6E-08 46.3 1.6 147 75-253 11-167 (201)
196 pfam05185 PRMT5 PRMT5 arginine 96.7 0.0013 3.2E-08 44.3 3.0 104 97-224 186-294 (447)
197 KOG3987 consensus 96.7 0.0031 7.9E-08 41.7 4.9 120 94-250 109-258 (288)
198 pfam01234 NNMT_PNMT_TEMT NNMT/ 96.7 0.0039 9.8E-08 41.1 5.3 149 96-250 55-238 (261)
199 KOG1253 consensus 96.7 0.0005 1.3E-08 47.0 0.7 76 93-168 105-187 (525)
200 TIGR00497 hsdM type I restrict 96.7 0.00048 1.2E-08 47.1 0.5 170 67-246 199-394 (516)
201 KOG1122 consensus 96.6 0.0031 8E-08 41.7 4.4 153 93-258 237-407 (460)
202 pfam01269 Fibrillarin Fibrilla 96.6 0.0098 2.5E-07 38.4 6.9 130 93-258 69-218 (229)
203 TIGR01177 TIGR01177 conserved 96.6 0.0036 9.1E-08 41.3 4.4 154 66-249 181-342 (358)
204 pfam11968 DUF3321 Protein of u 96.5 0.019 4.9E-07 36.5 7.7 129 80-250 35-181 (220)
205 pfam11599 AviRa RRNA methyltra 96.5 0.00048 1.2E-08 47.1 -0.6 148 63-232 20-219 (249)
206 pfam10237 N6-adenineMlase Prob 96.4 0.0035 8.9E-08 41.4 3.6 62 160-250 81-142 (161)
207 PRK00536 speE spermidine synth 96.4 0.0069 1.7E-07 39.5 5.1 162 48-249 25-197 (262)
208 KOG1269 consensus 96.3 0.0031 7.8E-08 41.8 2.8 136 95-257 108-273 (364)
209 KOG1501 consensus 96.3 0.0012 3.2E-08 44.4 0.8 56 98-154 67-122 (636)
210 PRK11524 putative methyltransf 96.3 0.0038 9.7E-08 41.2 3.1 17 123-139 232-248 (284)
211 KOG3115 consensus 96.3 0.0055 1.4E-07 40.1 3.9 112 97-227 60-183 (249)
212 pfam07669 Eco57I Eco57I restri 96.2 0.0029 7.4E-08 41.9 2.4 70 164-247 2-78 (106)
213 COG1568 Predicted methyltransf 96.2 0.017 4.3E-07 36.9 6.2 167 5-175 22-232 (354)
214 KOG2793 consensus 96.2 0.032 8.3E-07 35.0 7.6 127 97-251 86-227 (248)
215 COG4262 Predicted spermidine s 96.1 0.0055 1.4E-07 40.1 3.1 172 47-246 241-431 (508)
216 PTZ00146 fibrillarin; Provisio 95.7 0.031 7.8E-07 35.2 5.7 134 92-260 130-284 (296)
217 TIGR00308 TRM1 N2,N2-dimethylg 95.7 0.0021 5.4E-08 42.8 -0.4 85 93-178 90-189 (462)
218 pfam04672 DUF574 Protein of un 95.6 0.065 1.7E-06 33.0 7.1 127 98-243 70-212 (268)
219 pfam07091 FmrO Ribosomal RNA m 95.4 0.009 2.3E-07 38.7 2.1 72 96-169 101-173 (248)
220 pfam03141 DUF248 Putative meth 95.4 0.029 7.3E-07 35.4 4.7 158 74-264 339-506 (506)
221 KOG4058 consensus 95.2 0.0074 1.9E-07 39.2 1.1 106 48-161 29-135 (199)
222 KOG0822 consensus 95.0 0.025 6.3E-07 35.8 3.4 75 95-170 365-445 (649)
223 KOG2352 consensus 94.9 0.021 5.4E-07 36.2 2.8 113 96-226 294-415 (482)
224 COG1189 Predicted rRNA methyla 94.9 0.062 1.6E-06 33.2 5.2 120 95-250 77-223 (245)
225 COG0270 Dcm Site-specific DNA 94.8 0.0083 2.1E-07 38.9 0.5 145 97-262 2-164 (328)
226 TIGR00446 nop2p NOL1/NOP2/sun 94.8 0.07 1.8E-06 32.8 5.2 186 55-249 29-238 (284)
227 KOG2078 consensus 94.7 0.0093 2.4E-07 38.6 0.5 64 96-161 248-312 (495)
228 PRK00050 mraW S-adenosyl-methy 94.5 0.012 3E-07 38.0 0.7 72 80-157 10-82 (309)
229 PRK13699 putative methylase; P 94.4 0.01 2.6E-07 38.3 0.3 85 151-247 3-92 (227)
230 KOG2798 consensus 94.3 0.095 2.4E-06 31.9 5.0 56 80-137 133-188 (369)
231 PRK11524 putative methyltransf 94.2 0.014 3.5E-07 37.5 0.5 10 165-174 28-37 (284)
232 COG1064 AdhP Zn-dependent alco 94.1 0.02 5.1E-07 36.4 1.2 115 52-171 111-236 (339)
233 KOG4589 consensus 94.0 0.032 8E-07 35.1 1.9 138 96-252 68-209 (232)
234 KOG3178 consensus 93.9 0.055 1.4E-06 33.5 3.1 96 98-225 178-273 (342)
235 COG0293 FtsJ 23S rRNA methylas 93.9 0.18 4.6E-06 30.1 5.7 133 96-258 44-190 (205)
236 pfam04989 CmcI Cephalosporin h 93.8 0.19 4.7E-06 30.0 5.6 133 94-252 29-187 (202)
237 COG0500 SmtA SAM-dependent met 93.7 0.062 1.6E-06 33.2 3.0 97 101-226 52-154 (257)
238 pfam10354 DUF2431 Domain of un 93.5 0.062 1.6E-06 33.2 2.8 131 106-250 3-151 (166)
239 pfam01795 Methyltransf_5 MraW 93.4 0.028 7.2E-07 35.4 0.9 72 80-157 7-79 (310)
240 KOG1709 consensus 93.4 0.091 2.3E-06 32.1 3.4 124 73-231 83-210 (271)
241 pfam06859 Bin3 Bicoid-interact 93.3 0.058 1.5E-06 33.4 2.4 78 164-261 1-106 (110)
242 TIGR00675 dcm DNA-cytosine met 93.2 0.19 4.9E-06 29.9 4.9 153 101-261 1-182 (425)
243 KOG2198 consensus 92.5 0.28 7.2E-06 28.8 5.0 162 93-259 151-334 (375)
244 KOG2920 consensus 92.4 0.067 1.7E-06 32.9 1.6 74 96-170 115-202 (282)
245 PRK08507 prephenate dehydrogen 92.4 0.3 7.6E-06 28.7 4.9 39 100-140 2-44 (275)
246 pfam01555 N6_N4_Mtase DNA meth 92.3 0.2 5.1E-06 29.8 4.0 76 165-250 1-78 (221)
247 KOG1331 consensus 92.1 0.17 4.3E-06 30.3 3.4 113 68-224 26-140 (293)
248 TIGR01444 fkbM_fam methyltrans 91.7 0.058 1.5E-06 33.3 0.6 58 100-157 1-61 (142)
249 PRK13256 thiopurine S-methyltr 91.6 0.085 2.2E-06 32.3 1.4 122 94-242 40-189 (226)
250 COG1565 Uncharacterized conser 91.5 0.031 7.9E-07 35.2 -1.0 119 46-171 28-156 (370)
251 KOG1227 consensus 91.3 0.038 9.8E-07 34.5 -0.6 72 97-168 194-266 (351)
252 COG5459 Predicted rRNA methyla 91.2 0.84 2.2E-05 25.7 6.2 138 76-243 92-246 (484)
253 PRK09880 L-idonate 5-dehydroge 89.8 0.22 5.5E-06 29.6 2.1 48 94-141 166-214 (343)
254 pfam07757 AdoMet_MTase Predict 89.7 0.091 2.3E-06 32.1 0.2 34 96-131 57-90 (112)
255 TIGR03451 mycoS_dep_FDH mycoth 89.5 0.23 5.9E-06 29.4 2.1 48 93-140 172-220 (358)
256 COG4889 Predicted helicase [Ge 88.3 0.14 3.5E-06 30.9 0.3 142 83-227 831-1022(1518)
257 COG0275 Predicted S-adenosylme 87.0 0.27 6.9E-06 29.0 1.1 72 80-157 10-82 (314)
258 COG1889 NOP1 Fibrillarin-like 86.5 2.8 7.2E-05 22.3 9.4 145 81-261 61-225 (231)
259 KOG3350 consensus 86.3 0.72 1.8E-05 26.1 3.0 160 25-239 7-184 (217)
260 KOG2352 consensus 86.2 0.71 1.8E-05 26.2 2.9 107 99-224 50-158 (482)
261 PRK07502 cyclohexadienyl dehyd 85.8 0.52 1.3E-05 27.1 2.1 42 100-141 8-51 (307)
262 PRK11064 wecC UDP-N-acetyl-D-m 85.5 1.5 3.9E-05 24.0 4.3 14 208-221 100-113 (415)
263 KOG1201 consensus 85.0 0.28 7.2E-06 28.8 0.4 78 92-173 32-123 (300)
264 PRK05876 short chain dehydroge 84.2 0.24 6.1E-06 29.3 -0.2 85 98-185 6-104 (275)
265 COG0863 DNA modification methy 83.9 1.4 3.5E-05 24.3 3.6 41 98-140 223-263 (302)
266 PRK09422 alcohol dehydrogenase 83.7 0.54 1.4E-05 27.0 1.4 79 62-140 119-206 (338)
267 PRK04148 hypothetical protein; 83.7 0.27 6.8E-06 29.0 -0.2 66 94-170 13-83 (135)
268 PRK05650 short chain dehydroge 83.6 0.19 4.8E-06 30.0 -1.0 71 100-173 2-86 (270)
269 TIGR02817 adh_fam_1 zinc-bindi 83.5 0.39 9.9E-06 27.9 0.6 103 95-235 148-256 (338)
270 pfam02636 DUF185 Uncharacteriz 83.2 0.21 5.4E-06 29.7 -0.9 50 95-144 15-72 (240)
271 PRK05396 tdh L-threonine 3-deh 82.5 0.62 1.6E-05 26.6 1.3 43 98-140 164-207 (341)
272 PRK06914 short chain dehydroge 82.5 0.24 6E-06 29.3 -0.8 17 96-112 130-146 (280)
273 pfam11265 Med25_VWA Mediator c 81.9 3.6 9.2E-05 21.6 5.0 56 209-264 157-216 (219)
274 TIGR00692 tdh L-threonine 3-de 81.6 0.57 1.5E-05 26.8 0.9 68 82-159 152-220 (341)
275 pfam00107 ADH_zinc_N Zinc-bind 80.0 0.91 2.3E-05 25.5 1.4 83 107-225 1-88 (131)
276 PRK06194 hypothetical protein; 79.9 0.36 9.3E-06 28.1 -0.6 12 100-111 142-153 (301)
277 PRK11760 putative RNA 2'-O-rib 79.8 0.69 1.8E-05 26.3 0.8 126 96-262 209-350 (356)
278 pfam04445 DUF548 Protein of un 79.8 0.42 1.1E-05 27.7 -0.3 78 95-174 73-161 (235)
279 KOG1562 consensus 78.7 2.2 5.6E-05 23.0 3.1 108 96-225 120-234 (337)
280 pfam03721 UDPG_MGDP_dh_N UDP-g 78.6 5.5 0.00014 20.3 5.1 136 107-263 7-173 (185)
281 PRK06500 short chain dehydroge 78.6 0.53 1.4E-05 27.0 -0.1 116 97-225 5-134 (249)
282 PRK05872 short chain dehydroge 78.0 1 2.7E-05 25.1 1.3 84 96-185 7-104 (296)
283 KOG3924 consensus 77.8 0.47 1.2E-05 27.4 -0.6 77 95-171 190-279 (419)
284 PRK10904 DNA adenine methylase 77.6 4.5 0.00011 20.9 4.4 95 149-255 157-253 (271)
285 KOG3790 consensus 77.2 2.2 5.5E-05 23.0 2.7 94 68-171 184-282 (529)
286 KOG0919 consensus 76.8 0.77 2E-05 26.0 0.3 141 97-251 2-149 (338)
287 TIGR01963 PHB_DH 3-hydroxybuty 76.6 0.38 9.7E-06 28.0 -1.3 106 101-223 4-132 (258)
288 pfam05711 TylF Macrocin-O-meth 76.0 5 0.00013 20.6 4.3 194 34-255 4-243 (249)
289 PRK06139 short chain dehydroge 75.9 0.53 1.3E-05 27.0 -0.7 84 98-184 6-103 (324)
290 PRK06181 short chain dehydroge 75.7 0.52 1.3E-05 27.1 -0.8 69 101-172 4-86 (263)
291 PRK07109 short chain dehydroge 75.6 0.59 1.5E-05 26.7 -0.6 75 96-173 6-94 (338)
292 PRK07832 short chain dehydroge 75.4 0.49 1.3E-05 27.2 -1.0 83 100-184 2-98 (272)
293 pfam03686 UPF0146 Uncharacteri 75.4 0.97 2.5E-05 25.3 0.5 64 96-173 12-80 (127)
294 PRK07417 arogenate dehydrogena 75.3 2.2 5.6E-05 23.0 2.3 40 100-141 3-44 (280)
295 PRK05866 short chain dehydroge 75.2 0.39 9.9E-06 27.9 -1.6 76 94-172 36-125 (290)
296 COG4301 Uncharacterized conser 75.0 6.9 0.00018 19.7 4.8 59 74-136 59-121 (321)
297 PRK07102 short chain dehydroge 74.4 0.51 1.3E-05 27.2 -1.1 72 100-173 3-85 (243)
298 PRK12826 3-ketoacyl-(acyl-carr 74.0 0.62 1.6E-05 26.6 -0.8 79 98-179 6-98 (253)
299 PRK08251 short chain dehydroge 72.9 0.67 1.7E-05 26.4 -0.8 73 100-173 4-90 (248)
300 PRK07024 short chain dehydroge 72.6 0.82 2.1E-05 25.8 -0.4 39 100-139 4-44 (256)
301 PRK08340 glucose-1-dehydrogena 72.6 0.52 1.3E-05 27.1 -1.4 72 100-175 2-87 (259)
302 PRK07677 short chain dehydroge 72.3 0.49 1.2E-05 27.3 -1.7 70 100-172 5-88 (254)
303 PRK08217 fabG 3-ketoacyl-(acyl 72.1 0.82 2.1E-05 25.8 -0.5 71 99-172 6-90 (253)
304 pfam04378 DUF519 Protein of un 71.5 4 0.0001 21.3 2.9 74 101-179 61-140 (245)
305 PRK10742 putative methyltransf 71.3 0.94 2.4E-05 25.4 -0.4 78 95-174 86-174 (250)
306 PRK08945 short chain dehydroge 71.2 1.2 3E-05 24.7 0.1 80 93-174 8-103 (245)
307 PRK08277 D-mannonate oxidoredu 70.4 1 2.6E-05 25.2 -0.4 73 96-171 8-94 (278)
308 KOG1596 consensus 68.8 9.7 0.00025 18.7 4.6 122 92-249 151-293 (317)
309 PRK07062 short chain dehydroge 68.4 0.92 2.3E-05 25.5 -0.9 76 98-174 8-97 (265)
310 PRK05653 fabG 3-ketoacyl-(acyl 68.1 0.66 1.7E-05 26.4 -1.7 71 99-172 6-90 (246)
311 KOG1209 consensus 67.8 1.3 3.2E-05 24.6 -0.3 76 96-171 5-88 (289)
312 PRK12384 sorbitol-6-phosphate 67.2 0.68 1.7E-05 26.3 -1.8 77 101-178 5-95 (259)
313 PRK09242 tropinone reductase; 67.0 1.5 3.8E-05 24.1 -0.1 76 96-172 8-97 (258)
314 PRK07454 short chain dehydroge 66.6 1.2 3E-05 24.7 -0.6 72 99-173 7-92 (241)
315 KOG2782 consensus 66.2 2.2 5.7E-05 22.9 0.7 66 73-142 23-88 (303)
316 COG0677 WecC UDP-N-acetyl-D-ma 66.1 11 0.00028 18.4 4.9 121 99-241 10-144 (436)
317 PRK12429 3-hydroxybutyrate deh 66.0 1.1 2.9E-05 24.9 -0.9 72 100-174 6-91 (258)
318 PRK07666 fabG 3-ketoacyl-(acyl 65.6 1.3 3.4E-05 24.4 -0.6 75 97-174 5-93 (238)
319 PRK06720 hypothetical protein; 65.2 1.7 4.3E-05 23.7 -0.1 74 98-174 16-103 (169)
320 PRK05855 short chain dehydroge 64.6 1.5 3.9E-05 24.0 -0.4 125 45-173 230-401 (582)
321 PRK07097 gluconate 5-dehydroge 64.2 1.5 3.8E-05 24.1 -0.5 85 96-183 8-106 (265)
322 PRK06940 short chain dehydroge 63.8 1.3 3.4E-05 24.4 -0.9 55 100-157 6-61 (277)
323 KOG0024 consensus 63.8 2.4 6.1E-05 22.8 0.4 48 92-139 164-212 (354)
324 PRK09186 flagellin modificatio 63.1 1.6 4.1E-05 23.9 -0.5 71 100-172 6-90 (255)
325 PRK08213 gluconate 5-dehydroge 63.1 1.7 4.3E-05 23.7 -0.4 75 96-173 10-98 (259)
326 TIGR00006 TIGR00006 S-adenosyl 62.2 3.3 8.5E-05 21.8 1.0 62 93-156 23-86 (323)
327 PRK06125 short chain dehydroge 62.0 1.8 4.7E-05 23.5 -0.4 119 97-224 6-136 (259)
328 PRK06227 consensus 61.6 1.8 4.6E-05 23.6 -0.5 83 99-184 6-102 (256)
329 pfam03668 ATP_bind_2 P-loop AT 61.4 9.3 0.00024 18.9 3.1 87 164-255 182-283 (284)
330 PRK12825 fabG 3-ketoacyl-(acyl 61.1 1.6 4.1E-05 23.9 -0.8 81 97-180 6-101 (250)
331 PRK07890 short chain dehydroge 60.7 2.5 6.4E-05 22.6 0.1 116 100-225 7-138 (258)
332 pfam03492 Methyltransf_7 SAM d 59.9 2.1 5.4E-05 23.1 -0.4 23 95-117 14-36 (331)
333 PRK05854 short chain dehydroge 59.8 2.3 5.9E-05 22.8 -0.2 27 33-59 75-102 (314)
334 PRK09291 short chain dehydroge 59.7 1.9 4.8E-05 23.4 -0.7 15 121-135 26-40 (257)
335 PRK10458 DNA cytosine methylas 59.5 1.8 4.7E-05 23.5 -0.7 81 40-141 53-133 (470)
336 PRK08085 gluconate 5-dehydroge 59.3 2.3 6E-05 22.8 -0.2 75 96-173 7-95 (254)
337 PRK09072 short chain dehydroge 59.3 2.2 5.7E-05 22.9 -0.4 39 99-138 6-46 (262)
338 PRK10309 galactitol-1-phosphat 59.0 3.4 8.7E-05 21.7 0.6 79 63-141 119-205 (347)
339 PRK08267 short chain dehydroge 58.9 1.9 4.8E-05 23.4 -0.8 37 101-138 4-42 (258)
340 PRK08324 short chain dehydroge 58.9 2.4 6E-05 22.8 -0.3 116 100-225 422-554 (676)
341 PRK05565 fabG 3-ketoacyl-(acyl 58.9 1.9 4.9E-05 23.4 -0.7 85 98-185 5-104 (247)
342 TIGR01158 SUI1_rel translation 58.4 15 0.00038 17.5 4.6 42 205-246 62-106 (111)
343 PRK07814 short chain dehydroge 58.0 2.5 6.3E-05 22.6 -0.3 74 98-174 10-97 (263)
344 PRK06545 prephenate dehydrogen 57.0 3.2 8.2E-05 21.9 0.1 19 121-139 25-43 (357)
345 PRK05786 fabG 3-ketoacyl-(acyl 56.7 2.9 7.5E-05 22.2 -0.1 114 98-225 5-133 (238)
346 PRK06198 short chain dehydroge 56.7 2.3 5.8E-05 22.9 -0.7 85 97-184 5-104 (268)
347 PRK07576 short chain dehydroge 56.5 2.3 5.9E-05 22.8 -0.7 72 97-171 7-92 (260)
348 PRK06482 short chain dehydroge 56.4 1.5 3.9E-05 24.0 -1.6 21 93-113 122-142 (276)
349 TIGR00478 tly hemolysin A; Int 56.3 5.2 0.00013 20.5 1.1 79 64-154 48-127 (240)
350 PRK10083 putative dehydrogenas 55.4 3.8 9.8E-05 21.4 0.3 49 93-141 156-206 (339)
351 PRK07201 short chain dehydroge 55.2 2.5 6.3E-05 22.6 -0.7 123 48-173 311-462 (663)
352 PRK07326 short chain dehydroge 55.1 2.4 6.1E-05 22.7 -0.8 72 98-174 5-90 (235)
353 PRK06200 2,3-dihydroxy-2,3-dih 54.0 3.2 8.1E-05 21.9 -0.3 70 97-172 5-88 (263)
354 PRK06949 short chain dehydroge 54.0 2.7 6.9E-05 22.4 -0.6 74 97-173 8-95 (258)
355 PRK06346 consensus 54.0 1.7 4.3E-05 23.7 -1.7 71 100-173 7-91 (251)
356 PRK06197 short chain dehydroge 53.3 3.1 7.8E-05 22.0 -0.5 32 30-61 74-106 (306)
357 PRK06128 oxidoreductase; Provi 53.1 4.4 0.00011 21.0 0.3 138 71-225 35-189 (300)
358 pfam11899 DUF3419 Protein of u 53.0 3.7 9.4E-05 21.5 -0.1 55 148-226 272-330 (376)
359 PRK05557 fabG 3-ketoacyl-(acyl 52.2 2.8 7.2E-05 22.2 -0.8 117 99-225 6-139 (248)
360 PRK06101 short chain dehydroge 52.2 3.3 8.5E-05 21.8 -0.4 34 101-135 4-39 (241)
361 COG1063 Tdh Threonine dehydrog 51.9 4.1 0.00011 21.2 0.0 40 100-139 171-211 (350)
362 PRK07479 consensus 51.8 2 5.1E-05 23.3 -1.6 73 99-174 6-92 (252)
363 PRK06172 short chain dehydroge 51.6 3.4 8.8E-05 21.7 -0.4 72 99-173 8-93 (253)
364 PRK06077 fabG 3-ketoacyl-(acyl 51.4 5 0.00013 20.6 0.4 116 100-225 5-135 (249)
365 pfam02558 ApbA Ketopantoate re 51.0 20 0.0005 16.7 3.5 36 207-242 80-116 (150)
366 PRK13341 recombination factor 51.0 20 0.0005 16.7 3.5 33 95-127 490-522 (726)
367 COG4798 Predicted methyltransf 50.6 20 0.00051 16.7 5.6 135 94-247 45-201 (238)
368 PRK08226 short chain dehydroge 50.3 3.7 9.6E-05 21.4 -0.4 74 98-175 6-93 (263)
369 TIGR01647 ATPase-IIIA_H plasma 50.3 11 0.00027 18.5 1.9 95 25-159 428-536 (835)
370 PRK08862 short chain dehydroge 50.2 3.5 9E-05 21.6 -0.5 71 98-171 5-90 (227)
371 PRK05867 short chain dehydroge 50.1 3.6 9.1E-05 21.6 -0.5 76 96-174 7-96 (253)
372 PRK07831 short chain dehydroge 49.9 4.2 0.00011 21.1 -0.2 76 97-173 15-105 (261)
373 PRK10538 3-hydroxy acid dehydr 49.8 3.3 8.5E-05 21.8 -0.7 13 121-133 24-36 (248)
374 PRK06522 2-dehydropantoate 2-r 49.7 21 0.00052 16.6 3.5 19 204-222 214-232 (307)
375 PRK07478 short chain dehydroge 49.5 3.9 1E-04 21.3 -0.4 72 99-173 7-92 (254)
376 KOG2651 consensus 49.4 4.1 0.0001 21.2 -0.3 42 97-139 153-194 (476)
377 PRK07825 short chain dehydroge 48.7 3.9 0.0001 21.3 -0.5 36 100-136 7-44 (273)
378 COG2961 ComJ Protein involved 48.7 17 0.00043 17.2 2.7 70 101-175 92-167 (279)
379 PRK05416 hypothetical protein; 48.6 17 0.00042 17.2 2.7 86 164-255 188-288 (292)
380 PRK08589 short chain dehydroge 48.6 4.6 0.00012 20.9 -0.2 71 98-172 6-90 (272)
381 PRK07041 short chain dehydroge 48.4 4.1 0.00011 21.2 -0.4 81 98-182 7-97 (240)
382 TIGR03206 benzo_BadH 2-hydroxy 48.1 2.4 6.1E-05 22.7 -1.7 71 100-173 5-89 (250)
383 PRK06113 7-alpha-hydroxysteroi 47.6 5.3 0.00014 20.5 0.0 75 96-173 9-97 (255)
384 PRK12939 short chain dehydroge 47.5 2.2 5.6E-05 23.0 -1.9 117 99-225 8-140 (250)
385 PRK07063 short chain dehydroge 47.3 4.8 0.00012 20.7 -0.2 74 97-173 6-94 (259)
386 PRK07774 short chain dehydroge 46.8 4.6 0.00012 20.9 -0.4 71 99-172 7-91 (250)
387 KOG0879 consensus 46.3 9.4 0.00024 18.8 1.1 56 105-161 82-137 (177)
388 PRK08263 short chain dehydroge 46.3 3.8 9.7E-05 21.4 -0.9 18 95-112 125-142 (275)
389 PRK05993 short chain dehydroge 46.3 3.7 9.4E-05 21.5 -0.9 19 95-113 124-142 (277)
390 pfam06016 Reovirus_L2 Reovirus 46.0 20 0.00052 16.6 2.8 47 93-141 818-864 (1289)
391 COG1004 Ugd Predicted UDP-gluc 45.8 21 0.00054 16.5 2.9 14 122-135 24-37 (414)
392 PRK09491 rimI ribosomal-protei 45.7 24 0.0006 16.2 5.1 52 202-254 75-128 (144)
393 PRK07533 enoyl-(acyl carrier p 44.6 8 0.0002 19.3 0.6 73 98-173 6-93 (254)
394 PRK05599 hypothetical protein; 44.2 4.4 0.00011 21.0 -0.8 15 165-179 173-187 (246)
395 PRK08594 enoyl-(acyl carrier p 43.8 12 0.00032 18.0 1.4 76 99-175 7-97 (256)
396 TIGR03366 HpnZ_proposed putati 43.7 7.3 0.00019 19.5 0.2 47 94-140 117-164 (280)
397 TIGR03026 NDP-sugDHase nucleot 43.3 26 0.00065 16.0 4.3 14 231-244 334-347 (411)
398 PRK07985 oxidoreductase; Provi 43.2 13 0.00032 18.0 1.4 120 96-225 47-183 (294)
399 PRK12937 short chain dehydroge 42.1 4.9 0.00012 20.7 -0.9 116 100-225 7-137 (245)
400 PRK12746 short chain dehydroge 42.1 3.7 9.4E-05 21.5 -1.5 117 99-225 7-144 (254)
401 TIGR01706 NAPA periplasmic nit 41.8 10 0.00026 18.6 0.7 40 43-82 231-270 (930)
402 PRK06138 short chain dehydroge 41.7 6.5 0.00017 19.9 -0.3 72 99-174 6-91 (252)
403 PRK06124 gluconate 5-dehydroge 41.1 6.2 0.00016 20.0 -0.5 75 97-174 13-101 (259)
404 COG0338 Dam Site-specific DNA 40.9 10 0.00027 18.5 0.7 95 149-254 156-254 (274)
405 COG1909 Uncharacterized protei 40.9 11 0.00029 18.3 0.9 102 135-242 43-163 (167)
406 PRK05875 short chain dehydroge 40.8 6.4 0.00016 19.9 -0.4 73 99-172 8-95 (277)
407 pfam02086 MethyltransfD12 D12 40.4 8.1 0.00021 19.2 0.1 86 149-248 158-247 (254)
408 PRK07231 fabG 3-ketoacyl-(acyl 40.3 4.3 0.00011 21.0 -1.4 70 98-172 6-89 (250)
409 TIGR01011 rpsB_bact ribosomal 39.5 29 0.00074 15.6 5.5 60 187-247 18-92 (227)
410 PRK12744 short chain dehydroge 39.5 6.9 0.00017 19.7 -0.4 119 97-225 7-143 (257)
411 PRK06701 short chain dehydroge 39.1 6.8 0.00017 19.8 -0.5 121 95-225 42-178 (289)
412 TIGR02294 nickel_nikA nickel A 38.8 13 0.00032 18.0 0.8 106 72-195 204-326 (513)
413 PRK05717 oxidoreductase; Valid 38.7 4.6 0.00012 20.8 -1.4 68 99-172 11-92 (255)
414 pfam05430 DUF752 Protein of un 38.7 30 0.00077 15.5 6.2 53 208-264 71-123 (124)
415 PRK13394 3-hydroxybutyrate deh 38.7 6.6 0.00017 19.8 -0.6 73 98-173 7-93 (262)
416 PRK12829 short chain dehydroge 38.4 9.2 0.00023 18.9 0.1 73 96-173 9-95 (264)
417 KOG2539 consensus 38.4 4.9 0.00012 20.7 -1.3 86 83-170 186-280 (491)
418 PRK08643 acetoin reductase; Va 38.2 6.7 0.00017 19.8 -0.7 70 101-173 5-88 (256)
419 PRK06841 short chain dehydroge 37.7 9.2 0.00023 18.9 -0.0 71 97-173 14-98 (255)
420 COG1660 Predicted P-loop-conta 37.7 31 0.00079 15.4 3.8 86 164-254 183-284 (286)
421 PRK06179 short chain dehydroge 37.7 6.9 0.00018 19.7 -0.6 18 95-112 121-138 (270)
422 KOG0023 consensus 37.5 18 0.00046 17.0 1.4 68 97-168 181-250 (360)
423 PRK08339 short chain dehydroge 37.4 4 0.0001 21.3 -1.9 73 100-174 10-95 (263)
424 PRK06505 enoyl-(acyl carrier p 36.7 9.3 0.00024 18.8 -0.1 39 100-138 9-50 (271)
425 cd00474 SUI1_eIF1 The SUI1/eIF 36.3 33 0.00083 15.3 5.3 41 205-245 27-70 (77)
426 PRK06182 short chain dehydroge 36.3 8.3 0.00021 19.2 -0.4 20 94-113 121-140 (273)
427 PRK07776 consensus 36.2 9.3 0.00024 18.9 -0.2 70 98-172 8-91 (252)
428 PRK06057 short chain dehydroge 35.9 10 0.00026 18.5 0.0 69 97-173 6-88 (255)
429 PRK06180 short chain dehydroge 35.9 5.7 0.00015 20.2 -1.3 21 93-113 124-144 (277)
430 PRK07806 short chain dehydroge 35.7 21 0.00052 16.6 1.5 111 98-225 6-132 (248)
431 PRK06114 short chain dehydroge 35.4 10 0.00026 18.6 -0.1 75 96-173 14-103 (262)
432 TIGR01575 rimI ribosomal-prote 35.1 34 0.00087 15.1 5.5 61 195-256 68-130 (140)
433 COG2933 Predicted SAM-dependen 34.8 20 0.00052 16.6 1.4 66 96-171 210-277 (358)
434 PRK08628 short chain dehydroge 34.5 12 0.0003 18.2 0.1 71 99-173 8-92 (258)
435 PRK08265 short chain dehydroge 34.2 11 0.00029 18.3 0.0 66 100-171 8-87 (261)
436 pfam02153 PDH Prephenate dehyd 34.0 12 0.00032 18.0 0.2 29 112-140 2-30 (258)
437 PRK08220 2,3-dihydroxybenzoate 34.0 7.8 0.0002 19.3 -0.9 66 97-173 7-86 (253)
438 PRK00939 translation initiatio 33.9 36 0.00091 15.0 5.4 42 205-246 51-95 (99)
439 TIGR02194 GlrX_NrdH Glutaredox 33.8 26 0.00065 15.9 1.8 38 210-247 12-49 (72)
440 TIGR00571 dam DNA adenine meth 33.7 16 0.00042 17.2 0.7 86 149-249 202-305 (327)
441 PRK02006 murD UDP-N-acetylmura 33.6 13 0.00034 17.9 0.2 26 46-71 50-79 (501)
442 PRK07067 sorbitol dehydrogenas 33.6 10 0.00026 18.6 -0.3 70 99-174 6-89 (256)
443 PRK12824 acetoacetyl-CoA reduc 33.4 9.3 0.00024 18.8 -0.6 83 101-185 5-101 (245)
444 TIGR01160 SUI1_MOF2 translatio 33.3 36 0.00093 14.9 3.1 42 204-245 52-101 (111)
445 PRK07578 short chain dehydroge 33.2 5.2 0.00013 20.5 -1.9 107 100-225 2-109 (199)
446 PRK07066 3-hydroxybutyryl-CoA 32.9 37 0.00094 14.9 3.8 145 100-256 9-189 (321)
447 PRK07451 translation initiatio 32.9 37 0.00095 14.9 5.3 43 204-246 62-107 (112)
448 PRK05693 short chain dehydroge 32.8 3.7 9.5E-05 21.5 -2.7 18 97-114 121-138 (274)
449 PRK12828 short chain dehydroge 32.7 12 0.0003 18.2 -0.2 71 98-173 7-91 (239)
450 PRK06550 fabG 3-ketoacyl-(acyl 32.2 12 0.0003 18.2 -0.2 62 99-172 6-76 (237)
451 pfam04019 DUF359 Protein of un 32.1 37 0.00093 14.9 2.3 69 168-242 38-118 (121)
452 COG5379 BtaA S-adenosylmethion 32.0 19 0.00049 16.8 0.9 43 96-140 62-104 (414)
453 PRK11747 dinG ATP-dependent DN 31.9 24 0.00061 16.2 1.3 33 208-240 522-555 (697)
454 PRK07035 short chain dehydroge 31.7 11 0.00028 18.4 -0.4 73 97-172 7-93 (252)
455 PRK08159 enoyl-(acyl carrier p 31.4 18 0.00047 16.9 0.7 74 98-174 10-98 (272)
456 TIGR00182 plsX fatty acid/phos 31.1 20 0.00051 16.6 0.9 84 85-170 125-227 (344)
457 PRK06947 glucose-1-dehydrogena 30.1 13 0.00034 17.8 -0.2 74 97-173 5-93 (252)
458 pfam03767 Acid_phosphat_B HAD 30.0 41 0.0011 14.6 4.2 14 167-180 87-100 (230)
459 PRK12745 3-ketoacyl-(acyl-carr 29.7 7.6 0.00019 19.4 -1.5 68 102-172 9-91 (259)
460 PRK06079 enoyl-(acyl carrier p 29.6 16 0.00041 17.3 0.2 73 98-175 7-94 (252)
461 PRK06484 short chain dehydroge 29.5 11 0.00027 18.5 -0.8 71 97-173 273-357 (530)
462 KOG1098 consensus 29.4 15 0.00037 17.6 -0.1 35 97-131 44-79 (780)
463 KOG4690 consensus 29.3 16 0.00041 17.3 0.1 33 103-144 84-116 (165)
464 TIGR03201 dearomat_had 6-hydro 29.3 16 0.00042 17.2 0.1 48 94-142 163-211 (349)
465 pfam06460 NSP13 Coronavirus NS 29.0 43 0.0011 14.5 4.6 118 93-244 58-188 (300)
466 PRK07074 short chain dehydroge 29.0 8.3 0.00021 19.2 -1.4 35 104-139 8-44 (256)
467 KOG0280 consensus 28.9 43 0.0011 14.5 4.1 165 50-253 89-287 (339)
468 PRK09134 short chain dehydroge 28.6 14 0.00036 17.7 -0.3 79 96-177 7-100 (256)
469 TIGR01087 murD UDP-N-acetylmur 28.4 19 0.00049 16.8 0.4 70 101-172 2-74 (476)
470 smart00489 DEXDc3 DEAD-like he 28.0 26 0.00066 15.9 1.0 33 72-109 7-39 (289)
471 smart00488 DEXDc2 DEAD-like he 28.0 26 0.00066 15.9 1.0 33 72-109 7-39 (289)
472 KOG0022 consensus 27.8 24 0.0006 16.2 0.7 92 46-139 133-235 (375)
473 PRK08125 bifunctional UDP-gluc 27.7 19 0.00048 16.8 0.2 63 98-168 315-386 (660)
474 PRK09019 translation initiatio 27.4 46 0.0012 14.3 5.6 42 205-246 59-103 (108)
475 KOG2360 consensus 27.4 26 0.00067 15.9 0.9 81 93-174 209-294 (413)
476 COG0773 MurC UDP-N-acetylmuram 27.4 12 0.00032 18.0 -0.8 24 205-228 196-219 (459)
477 PRK08993 2-deoxy-D-gluconate 3 27.3 15 0.00039 17.4 -0.3 73 96-173 8-94 (253)
478 PRK07792 fabG 3-ketoacyl-(acyl 27.2 19 0.00048 16.8 0.1 11 100-110 146-156 (303)
479 PRK10329 glutaredoxin-like pro 26.8 47 0.0012 14.2 2.4 38 210-247 14-51 (81)
480 KOG2013 consensus 26.8 22 0.00057 16.3 0.5 12 51-62 259-270 (603)
481 TIGR01096 3A0103s03R lysine-ar 26.6 47 0.0012 14.2 3.9 145 100-252 27-199 (333)
482 LOAD_Ccd1 consensus 26.4 48 0.0012 14.2 7.0 53 210-262 17-70 (71)
483 KOG1205 consensus 26.3 17 0.00043 17.2 -0.3 76 97-173 11-100 (282)
484 pfam03514 GRAS GRAS family tra 26.1 47 0.0012 14.2 2.0 49 92-140 105-164 (371)
485 COG1743 Adenine-specific DNA m 25.6 28 0.00071 15.7 0.8 88 163-250 488-615 (875)
486 KOG1047 consensus 25.5 7 0.00018 19.6 -2.3 89 162-257 252-358 (613)
487 PRK13307 bifunctional formalde 25.2 25 0.00064 16.0 0.5 21 39-59 134-155 (392)
488 PRK08177 short chain dehydroge 25.1 11 0.00029 18.3 -1.3 33 101-134 4-38 (225)
489 TIGR03325 BphB_TodD cis-2,3-di 25.1 16 0.0004 17.4 -0.6 68 99-172 6-87 (262)
490 pfam01408 GFO_IDH_MocA Oxidore 24.8 51 0.0013 14.0 3.4 105 100-245 2-115 (120)
491 COG2515 Acd 1-aminocyclopropan 24.7 25 0.00065 16.0 0.4 52 101-152 183-245 (323)
492 PRK06824 translation initiatio 24.6 51 0.0013 14.0 5.4 42 205-246 69-113 (118)
493 PRK12936 3-ketoacyl-(acyl-carr 24.5 17 0.00043 17.2 -0.5 84 97-186 5-102 (245)
494 KOG1198 consensus 24.4 13 0.00033 17.9 -1.1 74 91-169 153-230 (347)
495 TIGR01830 3oxo_ACP_reduc 3-oxo 24.3 13 0.00034 17.8 -1.1 62 107-171 6-82 (238)
496 COG1062 AdhC Zn-dependent alco 24.2 25 0.00064 16.0 0.3 58 82-139 170-228 (366)
497 pfam04620 FlaA Flagellar filam 24.2 17 0.00042 17.2 -0.6 11 166-176 149-159 (217)
498 TIGR01661 ELAV_HUD_SF ELAV/HuD 24.1 52 0.0013 13.9 3.0 34 221-254 353-390 (436)
499 PRK00421 murC UDP-N-acetylmura 23.7 11 0.00029 18.3 -1.5 59 106-172 17-75 (459)
500 TIGR02818 adh_III_F_hyde S-(hy 23.6 23 0.00058 16.3 0.0 33 107-139 193-228 (368)
No 1
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=100.00 E-value=0 Score=587.21 Aligned_cols=262 Identities=31% Similarity=0.519 Sum_probs=250.5
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHH
Q ss_conf 75689999999983899989850448858989999999999989749837685363144237677504620512235655
Q gi|254780875|r 2 QALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELL 81 (264)
Q Consensus 2 ~a~~dA~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~l 81 (264)
+|++||++||+|+++++++++++++++.+++++...+.+++.||.+|||+|||+|+++|||++|+|+++|||||||||+|
T Consensus 23 sP~LDAelLL~hvL~~~r~~L~~~~d~~Lse~e~~~f~~li~RR~~~ePvaYI~G~keF~g~~F~Vn~~VLIPRPeTE~L 102 (503)
T PRK01544 23 SPQLEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVL 102 (503)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCEEEECCCCCCCCCCCHHH
T ss_conf 66888999999997949999862777778999999999999998759988998387132584678489833589963999
Q ss_pred HHHHCCCCCCC-----------------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 53101233211-----------------0124686056642142112331222233321001333222002444201100
Q gi|254780875|r 82 VDSALAFSLPR-----------------IEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN 144 (264)
Q Consensus 82 v~~~l~~~~~~-----------------~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~ 144 (264)
||.+++..... ..+.+..+|||+|||||||++||++++|+++|+|+|+|++|+++|++|+.++
T Consensus 103 VE~vL~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~ILDLGTGSGcIaISLa~e~p~a~v~avDIS~~AL~vAk~Na~~~ 182 (503)
T PRK01544 103 VDVVFQHSQCHSRESGNPEKKQLDSVSKNRNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY 182 (503)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 99999986420222345310011000012345577278846667999999998678998999989899999999999980
Q ss_pred CCCCCCCCCCCCCCCCCC-CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 012222222222222221-0023332011333210012211111235754332101123210256899999853788789
Q gi|254780875|r 145 GVSERFDTLQSDWFSSVE-GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLC 223 (264)
Q Consensus 145 ~~~~~i~~~~~d~~~~~~-~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l 223 (264)
++.+|++|+++|||+.+. ++||+||||||||+.+++..|+++|++|||++|||||.|||++||+|++++.++|+|+|++
T Consensus 183 ~v~~ri~fi~sdwfe~l~~~kFDlIVSNPPYI~~~e~~~L~~eV~~yEP~lAL~ggeDGL~~Yr~Ia~~a~~~Lkp~G~l 262 (503)
T PRK01544 183 EVTDRIQIIHSNWFENIGKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKI 262 (503)
T ss_pred CCCCCEEEEECCCHHCCCCCCCCEEEECCCCCCHHHHHHCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 88201799965531015888724798389988756666527665316937886488762899999999889852889889
Q ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 9981766799999999978980589980568997599997
Q gi|254780875|r 224 SVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFC 263 (264)
Q Consensus 224 ~lEig~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~ 263 (264)
++|||++|+++|.++|.++||....++||++|++||+..+
T Consensus 263 ~lEIGy~Q~e~V~~IF~~~gy~~~~~~kdl~~~~rvi~~~ 302 (503)
T PRK01544 263 ILEIGFKQAEAVTQIFLDHGYNIDSIYKDLQSHNRVIEIS 302 (503)
T ss_pred EEEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEC
T ss_conf 9997878689999999965943777766650576289962
No 2
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=0 Score=558.72 Aligned_cols=255 Identities=35% Similarity=0.488 Sum_probs=243.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHH
Q ss_conf 75689999999983899989850448858989999999999989749837685363144237677504620512235655
Q gi|254780875|r 2 QALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELL 81 (264)
Q Consensus 2 ~a~~dA~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~l 81 (264)
+|++||++||+|++|+++++++++.+.++++.+..++.+++.||.+|+|+|||+|+++|||++|+|+|+|||||||||+|
T Consensus 19 sp~ldaelLl~~~l~~~r~~l~~~~~~~l~~~~~~~~~~li~RR~~gePlqYI~G~~~F~g~~f~V~~~VLIPRPETE~L 98 (277)
T PRK09328 19 SPRRDAEILLEHVTGKGRTYILAFGETQLTDEQQQQLEALLTRRRQGEPIAYLTGEREFWSLPLFVSPATLIPRPDTECL 98 (277)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEEEEECCCEEEECCCHHHH
T ss_conf 98999999999997919999974878899999999999999999869978998382156525898779836408817999
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53101233211012468605664214211233122223332100133322200244420110001222222222222222
Q gi|254780875|r 82 VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV 161 (264)
Q Consensus 82 v~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~ 161 (264)
||++++... ..+.+|||+|||||||++++|+++|+++|+|+|+|++|+++|++|+++++++ ++.|+++||++.+
T Consensus 99 Ve~~l~~~~-----~~~~~ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~~Na~~~~l~-~v~~~~~d~~~~~ 172 (277)
T PRK09328 99 VEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQRNAQHLAIK-NVRILQSDWFSAL 172 (277)
T ss_pred HHHHHHHCC-----CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCCHHHC
T ss_conf 999999645-----3788189954556999999998677989999648999999999999980988-6999944752113
Q ss_pred CC-HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 10-02333201133321001221111123575433210112321025689999985378878999817667999999999
Q gi|254780875|r 162 EG-LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFE 240 (264)
Q Consensus 162 ~~-~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~ 240 (264)
.+ +||+||||||||+.++++.++.+++ |||+.||+||+|||++|++|+..+.++|+|+|++++|||++|++.+.++++
T Consensus 173 ~~~~fDlIVSNPPYI~~~~~~~~~~~v~-~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Eig~~Q~~~v~~l~~ 251 (277)
T PRK09328 173 SGQQFAMIVSNPPYIDAQDPHLQQGDVR-FEPLSALVAADNGMADLAHIIEQARQYLVPGGWLLLEHGWQQGEAVRQLFI 251 (277)
T ss_pred CCCCCCEEEECCCCCCCCHHHHCCHHCC-CCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 7877788997899877000343824216-683899817975899999999999984466989999968158999999999
Q ss_pred HCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 78980589980568997599997
Q gi|254780875|r 241 SRKLFLVNAFKDYGGNDRVLLFC 263 (264)
Q Consensus 241 ~~gf~~v~~~kD~~g~~R~vi~~ 263 (264)
+.||..++++||++|++||++++
T Consensus 252 ~~gf~~i~~~kDl~g~~R~v~ar 274 (277)
T PRK09328 252 RAGYSDVETCRDYGDNERVTLGR 274 (277)
T ss_pred HCCCCEEEEECCCCCCCEEEEEE
T ss_conf 67997047861789992399999
No 3
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=0 Score=545.12 Aligned_cols=254 Identities=28% Similarity=0.410 Sum_probs=238.5
Q ss_pred CHHHHHHHHHHHHHCC-CHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHH
Q ss_conf 7568999999998389-998985044885898999999999998974983768536314423767750462051223565
Q gi|254780875|r 2 QALRDSHSFLCRVTGL-SSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETEL 80 (264)
Q Consensus 2 ~a~~dA~~Ll~~~l~~-~~~~l~~~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~ 80 (264)
+|++||++||+|++++ ++..++ +.++++++...+++++.||.+|||+|||+|+++|||++|+|+++|||||||||+
T Consensus 19 ~p~~dAe~Ll~h~L~~~~r~~L~---~~~l~~~~~~~~~~~i~RR~~gePl~YI~G~~~F~g~~f~V~~~VLIPRpETE~ 95 (285)
T PRK09329 19 FSDREAEDILMDLLEISSRAALH---DLVLSEEELMTYWKRLQKRGQRCPTAYIHGSVHFLGLELQVDPRVLIPRQETEI 95 (285)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHH---CCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCEEEECCCCEECCCHHHH
T ss_conf 88999999999994899466674---389999999999999999987994999827045449578868984205960999
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55310123321101246860566421421123312222333210013332220024442011000122222222222222
Q gi|254780875|r 81 LVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS 160 (264)
Q Consensus 81 lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~ 160 (264)
|||++++.... ..+...+||+|||||||++++++++|+++++|+|+|++|+++|++|++++++. ++|+++||++.
T Consensus 96 LVe~~l~~~~~---~~~~~~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~~Na~~~~~~--v~~~~~dl~~~ 170 (285)
T PRK09329 96 LVEKIIGYLQS---HKEIQTFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAKSNAKSNGLD--VDFLLGDLFAP 170 (285)
T ss_pred HHHHHHHHHHH---CCCCCEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHHHHHCCCC--EEEEECCHHHH
T ss_conf 99999999861---87777788845417999999998589865880337699999999999972994--79997630033
Q ss_pred CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 21002333201133321001221111123575433210112321025689999985378878999817667999999999
Q gi|254780875|r 161 VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFE 240 (264)
Q Consensus 161 ~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~ 240 (264)
+.++||+||||||||+++++..++++|+.|||+.||+||.|||++|++|+..++.+|+|+|+++||||++|.+.+.++++
T Consensus 171 ~~~~~DlIvSNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~Eig~~Q~~~v~~l~~ 250 (285)
T PRK09329 171 FSRPADAFVCNPPYLSFKEFFHVDPEVRCHEPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWLEIGSSQGESVKKIFA 250 (285)
T ss_pred HCCCCCEEEECCCCCCHHHHHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 34767889989998884445449875543670998847973899999999999996004988999968548999999999
Q ss_pred HCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 789805899805689975999979
Q gi|254780875|r 241 SRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 241 ~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
+.||.. +++||++|++||+.+.|
T Consensus 251 ~~g~~~-~v~kDl~G~~R~l~~~~ 273 (285)
T PRK09329 251 KHGISG-RVLQDLAGLDRFFFLEN 273 (285)
T ss_pred HCCCCC-EEEECCCCCCCEEEEEE
T ss_conf 669964-28117999953899983
No 4
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=100.00 E-value=0 Score=543.02 Aligned_cols=250 Identities=39% Similarity=0.610 Sum_probs=240.9
Q ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99999999838999898504488589899999999999897498376853631442376775046205122356555310
Q gi|254780875|r 6 DSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSA 85 (264)
Q Consensus 6 dA~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~ 85 (264)
||++|++|++|+++++++++++..+++++.+.+.+++.||.+|+|+|||+|+++|||++|+|+++|||||||||+||+++
T Consensus 1 dae~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~g~PlqYI~g~~~F~~~~f~V~~~VLIPRpETE~Lve~~ 80 (251)
T TIGR03534 1 DAELLLAHVLGKDRTQLLLHPEKELTPEELARFEALVARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAA 80 (251)
T ss_pred CHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEEEEEECCEEEECCCHHHHHHHH
T ss_conf 98999999979099999648888899999999999999998699689950876898689997188786488339999999
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CH
Q ss_conf 12332110124686056642142112331222233321001333222002444201100012222222222222221-00
Q gi|254780875|r 86 LAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE-GL 164 (264)
Q Consensus 86 l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~-~~ 164 (264)
++... ..+.+|||+|||||||++++|+++|+++++|+|+|+.|+++|++|+++|+++ ++.|+++||++.+. ++
T Consensus 81 l~~~~-----~~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~-~v~~~~~d~~~~~~~~~ 154 (251)
T TIGR03534 81 LERLK-----KGPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLE-NVRFLKSDWFEPLPGGK 154 (251)
T ss_pred HHHHC-----CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCHHHCCCCCC
T ss_conf 99731-----4898699955671699999999679978999989879999999999980998-26865131432156898
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 23332011333210012211111235754332101123210256899999853788789998176679999999997898
Q gi|254780875|r 165 FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKL 244 (264)
Q Consensus 165 fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf 244 (264)
||+||||||||+++++..++++|+.|||+.|||||+|||++|++|+..+.++|+++|++++|||++|.+.+.+++++.||
T Consensus 155 fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Eig~~q~~~v~~l~~~~gf 234 (251)
T TIGR03534 155 FDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEIGYDQGEAVRALFEAAGF 234 (251)
T ss_pred CCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCC
T ss_conf 66899789988745666328601026729997179846999999999999853679889999683789999999996899
Q ss_pred CEEEEEECCCCCCEEEE
Q ss_conf 05899805689975999
Q gi|254780875|r 245 FLVNAFKDYGGNDRVLL 261 (264)
Q Consensus 245 ~~v~~~kD~~g~~R~vi 261 (264)
..+++++|++|++||++
T Consensus 235 ~~i~~~kDl~g~~R~ii 251 (251)
T TIGR03534 235 ADVETRKDLAGKDRVVL 251 (251)
T ss_pred CEEEEEECCCCCCCEEC
T ss_conf 70688507898976779
No 5
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=100.00 E-value=0 Score=505.62 Aligned_cols=255 Identities=27% Similarity=0.380 Sum_probs=235.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHH
Q ss_conf 7568999999998389998985044885898999999999998974-983768536314423767750462051223565
Q gi|254780875|r 2 QALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLK-HESIHRILGWRDFYNVRLTLSSDTFEPRPETEL 80 (264)
Q Consensus 2 ~a~~dA~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~i~rr~~-g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~ 80 (264)
+|++||++||+|++++++++++++.+..+++.+..++.+++.||.+ ++|+|||+|+++|||++|+|+|+|||||||||.
T Consensus 28 ~prldAe~LLa~~L~~~r~~l~~~~~~~l~~~e~~~~~~lv~RR~~~r~Pl~YI~G~~~F~gl~f~V~~~VLIPR~~tee 107 (284)
T TIGR03533 28 NAWDEAVYLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAE 107 (284)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCEEEECCCCEECCCCCHH
T ss_conf 99999999999996959756776324889999999999999999827985899848656738478868995438997199
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55310123321101246860566421421123312222333210013332220024442011000122222222222222
Q gi|254780875|r 81 LVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS 160 (264)
Q Consensus 81 lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~ 160 (264)
||+.++... ....++.+|||+|||||||+|++|+++|+++|+|+|+|++|+++|++|+.+|++++|+.++++||++.
T Consensus 108 Lv~~~l~~~---~~~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~ 184 (284)
T TIGR03533 108 LIEDGFAPW---LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA 184 (284)
T ss_pred HHHHHHHHH---HCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 999999998---42367771555216807999999987899879999899999999999998608543368883514331
Q ss_pred CCC-HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 210-0233320113332100122111112357543321011232102568999998537887899981766799999999
Q gi|254780875|r 161 VEG-LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIF 239 (264)
Q Consensus 161 ~~~-~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll 239 (264)
+.+ +||+||||||||+++++..++++|+ |||+.||+||.|||++|++|+.+++++|+|||++++|||.+| +.+.+.+
T Consensus 185 ~~~~~fDlIVSNPPYI~~~e~~~l~~ev~-~EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~lEiG~~Q-~~~~~~~ 262 (284)
T TIGR03533 185 LPGRKYDLIVSNPPYVDAEDMADLPAEYH-HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAY 262 (284)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHCCHHHC-CCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHC
T ss_conf 45777787997799788465544976411-586998758955879999999988984256978999979788-9999866
Q ss_pred HHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 9789805899805689975999979
Q gi|254780875|r 240 ESRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 240 ~~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
.+.||.-.++- +|-+-|...+|
T Consensus 263 ~~~~~~~~~~~---~~~~~~~~~~~ 284 (284)
T TIGR03533 263 PDVPFTWLEFE---NGGDGVFLLTR 284 (284)
T ss_pred CCCCCEEEEEC---CCCCEEEEEEC
T ss_conf 89996477415---89836999849
No 6
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=0 Score=486.30 Aligned_cols=253 Identities=26% Similarity=0.375 Sum_probs=226.1
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCCHHHHCCCEEEEEEEEEEECCCCCHH-HHHH
Q ss_conf 756899999999838999898504488589899999999999897-49837685363144237677504620512-2356
Q gi|254780875|r 2 QALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSL-KHESIHRILGWRDFYNVRLTLSSDTFEPR-PETE 79 (264)
Q Consensus 2 ~a~~dA~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~i~rr~-~g~Pl~YIlg~~~F~~~~f~v~~~vLIPR-peTE 79 (264)
+|++||++|++|++|+++..++.+.+..+++.+..++.+++.||. .++|+|||+|+++|||++|+|+++||||| |+||
T Consensus 40 s~~~eA~~Ll~~~L~~~r~~l~~~~d~~l~~~e~~~~~~lv~rR~~~r~PlaYI~G~~~F~gl~f~V~~~VLIPRpp~~E 119 (307)
T PRK11805 40 NAWDEAVQLVLHALHLPLDIPEPFLDARLTPSEKERILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAE 119 (307)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCEEEECCCEECCCCCCHH
T ss_conf 99999999999985969556677415899999999999999999837985899948766748568867980158998499
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55531012332110124686056642142112331222233321001333222002444201100012222222222222
Q gi|254780875|r 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159 (264)
Q Consensus 80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~ 159 (264)
++++.+..+ .....+.+|||+|||||||+|++|+++|+++|+|+|+|+.|+++|++|+.+|++++|+.++++||++
T Consensus 120 Li~~~l~~~----~~~~~~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~ 195 (307)
T PRK11805 120 LIEDGFAPW----LEDEQPTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA 195 (307)
T ss_pred HHHHHHHHH----HCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999997----3357887277742782799999998789988999858999999999999983887738998040221
Q ss_pred CCCC-HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 2210-023332011333210012211111235754332101123210256899999853788789998176679999999
Q gi|254780875|r 160 SVEG-LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRI 238 (264)
Q Consensus 160 ~~~~-~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~l 238 (264)
.+++ +||+||||||||+++++..++++|+ |||++||+||.|||++|++|+.+++++|+|||++++|||.+|.. +.+.
T Consensus 196 ~l~~~~fDlIvSNPPYI~~~~~~~L~~ev~-~EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG~~q~~-l~~~ 273 (307)
T PRK11805 196 ALPGRRYDLIVSNPPYVDAEDMADLPAEYR-HEPELALAAGDDGLDLVRRILAEAADYLTEDGVLVCEVGNSMVH-LEAA 273 (307)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHCCHHHC-CCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH-HHHH
T ss_conf 268875077996799788565633977531-58788876892488999999998897447696899997978899-9986
Q ss_pred HHHCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 9978980589980568997599997
Q gi|254780875|r 239 FESRKLFLVNAFKDYGGNDRVLLFC 263 (264)
Q Consensus 239 l~~~gf~~v~~~kD~~g~~R~vi~~ 263 (264)
+.+..|.-+++. +|-+-|.+.+
T Consensus 274 ~p~~p~~wle~~---~g~~gv~~i~ 295 (307)
T PRK11805 274 YPDVPFTWLEFE---NGGDGVFLLT 295 (307)
T ss_pred CCCCCCEEEEEC---CCCCEEEEEE
T ss_conf 799995466206---8973799978
No 7
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=445.29 Aligned_cols=256 Identities=38% Similarity=0.550 Sum_probs=239.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHH
Q ss_conf 75689999999983899989850448858989999999999989749837685363144237677504620512235655
Q gi|254780875|r 2 QALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELL 81 (264)
Q Consensus 2 ~a~~dA~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~l 81 (264)
++..++++++++.++.+++++..+.+..+++++..++.+++.||.+|+|+|||+|+++|||++|+|+++|||||||||+|
T Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~L 99 (280)
T COG2890 20 TPNLDAELLLLHLLGKPRDQLLAHPEAELSEEELERLRELLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELL 99 (280)
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEECCEEEECCCCCCCCCCHHHH
T ss_conf 87434999998872688777764543447867899999999999769987681023656163453479866889767999
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53101233211012468605664214211233122223332100133322200244420110001222222222222222
Q gi|254780875|r 82 VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV 161 (264)
Q Consensus 82 v~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~ 161 (264)
++.++... ..... +|||+|||||||++++|+++|+++|+|+|+|++|+++|++|+..|++ .++.+.++|||+.+
T Consensus 100 ve~~l~~~----~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~ 173 (280)
T COG2890 100 VEAALALL----LQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL 173 (280)
T ss_pred HHHHHHHH----HCCCC-CEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCHHHCC
T ss_conf 99999751----11589-18996588319999999618988799998999999999999998289-74798740033346
Q ss_pred CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 10023332011333210012211111235754332101123210256899999853788789998176679999999997
Q gi|254780875|r 162 EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFES 241 (264)
Q Consensus 162 ~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~ 241 (264)
.++||+||||||||+.+ ...+.+++.+|||..||+||.||+++|++|+..++.+|+++|++++|+|++|.+.+.+++.+
T Consensus 174 ~~~fDlIVsNPPYip~~-~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~ 252 (280)
T COG2890 174 RGKFDLIVSNPPYIPAE-DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFED 252 (280)
T ss_pred CCCCCEEEECCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 88857799689988885-21137421358979987248777899999999899872868289999769848999999997
Q ss_pred CC-CCEEEEEECCCCCCEEEEEEC
Q ss_conf 89-805899805689975999979
Q gi|254780875|r 242 RK-LFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 242 ~g-f~~v~~~kD~~g~~R~vi~~r 264 (264)
.| |..+.+.+|++|.+|++.+.+
T Consensus 253 ~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 253 TGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CCCCEEEEEEECCCCCEEEEEEEE
T ss_conf 498447665514567635888760
No 8
>KOG2904 consensus
Probab=100.00 E-value=0 Score=387.94 Aligned_cols=260 Identities=28% Similarity=0.336 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHH--CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHH
Q ss_conf 5689999999983899989850--44885898999999999998974983768536314423767750462051223565
Q gi|254780875|r 3 ALRDSHSFLCRVTGLSSHQVIV--DPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETEL 80 (264)
Q Consensus 3 a~~dA~~Ll~~~l~~~~~~l~~--~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~ 80 (264)
++...++|.+|+++-. -+.+- --+.+++..|...+..++.+|.++.|+|||+|+++|.++++.|.|+|||||||||+
T Consensus 54 ~k~~~~~i~shvL~~K-f~si~ds~~~~pl~~~ql~~i~~~~~~R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE 132 (328)
T KOG2904 54 SKLSYKWIVSHVLPDK-FWSIEDSIVDDPLVILQLESIRWACLQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEE 132 (328)
T ss_pred HHHHHHHHHHHHHHHH-HCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHEECCCCCCCCEEEECCCEEECCCCHHH
T ss_conf 1100588987611143-134662020254425679999999999986288554015676478548723874326846799
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC----CCC
Q ss_conf 5531012332110124686056642142112331222233321001333222002444201100012222222----222
Q gi|254780875|r 81 LVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTL----QSD 156 (264)
Q Consensus 81 lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~----~~d 156 (264)
||++|++.... .+-.++..+||+|||||||++++++..|...++|+|.|+.|+++|.+|++++++.+++.++ .+|
T Consensus 133 ~V~~Vid~~~~-~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904 133 WVEAVIDALNN-SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99999999755-65326666887057831889999834787348998532889999998899874158468984122201
Q ss_pred CCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC--CCH
Q ss_conf 22222---1002333201133321001221111123575433210112321025689999985378878999817--667
Q gi|254780875|r 157 WFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG--YNQ 231 (264)
Q Consensus 157 ~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig--~~q 231 (264)
++... .+++|++|||||||++.|+..+++||+.|||+.||+||.+|++++..+...+++.|+|+|.++||.+ ...
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 25655454575248853899655551223271330237445430666326999999876675456688588973355668
Q ss_pred HHHHHHHHH---HCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 999999999---789805899805689975999979
Q gi|254780875|r 232 KVDVVRIFE---SRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 232 ~~~v~~ll~---~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
..-+..++. +--+..+.+..|++|++|+++.+|
T Consensus 292 ~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904 292 SYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIHR 327 (328)
T ss_pred CHHHHHHHHHCHHHCCCHHHEEECCCCCCCEEEEEE
T ss_conf 199999987132201321331443357863588872
No 9
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=100.00 E-value=2.4e-39 Score=279.36 Aligned_cols=262 Identities=30% Similarity=0.429 Sum_probs=236.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHH-HHHHHHHHHHHHCC-CCHHHHCCCEEEEEEEEEEECCCCCHHHHHH
Q ss_conf 756899999999838999898504488589899-99999999989749-8376853631442376775046205122356
Q gi|254780875|r 2 QALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQ-RFFLTNAIVRSLKH-ESIHRILGWRDFYNVRLTLSSDTFEPRPETE 79 (264)
Q Consensus 2 ~a~~dA~~Ll~~~l~~~~~~l~~~~~~~l~~~~-~~~l~~~i~rr~~g-~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE 79 (264)
++..++..++.+.++..+..+..+....++..+ ...+...+.+|.++ .|++|++|..+||+..|.|+++++||||+||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 106 (311)
T TIGR00536 27 NPWLEALLLLELDLGLERDLLLAFLTEELTPDETKERLFELVLRRLEGRVPVAYLLGKKEFWGLEFFVNEGVLIPRPETE 106 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCEECCCCCHH
T ss_conf 64113566654443334566665432014546789999999987641246256653001212510220475112576378
Q ss_pred HHHHHHCCCCCCC-CCCCCC-CCEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 5553101233211-012468-6056642142112331222233--32100133322200244420110001222222222
Q gi|254780875|r 80 LLVDSALAFSLPR-IEKRDV-VRILDLGTGTGAVCLALLKESP--FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS 155 (264)
Q Consensus 80 ~lv~~~l~~~~~~-~~~~~~-~~vLDlG~GsG~i~i~la~~~~--~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~ 155 (264)
.+++.++...... ...... ..++|+|||+||++++++..++ +..+.++|++++++.++++|+..+++.+++.+.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~p~~~~d~~~g~g~~~~~~~~~~~pc~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (311)
T TIGR00536 107 ELVEKVLLAALASLLSQPPLPLHILDLGTGSGCIALALAYEFPPCNAEVIAVDLSPDALALAEENAEKLGLEGRVELLQS 186 (311)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHH
T ss_conf 99999999988754114776501110145631566655430466662266411223678888876776432012001011
Q ss_pred CCCCCCCC----HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 22222210----02333201133321001221111123575433210-11232102568999998537887899981766
Q gi|254780875|r 156 DWFSSVEG----LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDG-GIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN 230 (264)
Q Consensus 156 d~~~~~~~----~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~g-g~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~ 230 (264)
+|++.+.+ ++|++++||||++..+.....++...|||..||.+ |.+|+..++.++..+..++.++|.+++|+|..
T Consensus 187 ~~~~~~~~~~~p~~~~~~~~ppy~~~~~~~~~~~~~~~~~p~~~l~~~g~~g~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 266 (311)
T TIGR00536 187 DLLEPLPGLGGPKLDLLVSNPPYIDEEDLADLSPGVVLFEPLLALVGFGDDGLKILKRILELAPDYLKPGGFLLLEIGNW 266 (311)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 24443320366522366458865441345553112343200345430474007899999875454305675589961622
Q ss_pred HHHHHHHHHH-H-----CCCCEEEEEEC-CCCCCEEEEEE
Q ss_conf 7999999999-7-----89805899805-68997599997
Q gi|254780875|r 231 QKVDVVRIFE-S-----RKLFLVNAFKD-YGGNDRVLLFC 263 (264)
Q Consensus 231 q~~~v~~ll~-~-----~gf~~v~~~kD-~~g~~R~vi~~ 263 (264)
|...+.+... . ..+..++..+| +++.+|.....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
T TIGR00536 267 QLGLLKELLRVPGDSYLFTWYDLELGRDGLSGKERVVLGL 306 (311)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 3567787664202013332232221000001101232121
No 10
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=99.92 E-value=8.6e-26 Score=190.18 Aligned_cols=159 Identities=30% Similarity=0.470 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 05122356555310123321101246860-56642142112331222233321001333222002444201100012222
Q gi|254780875|r 72 FEPRPETELLVDSALAFSLPRIEKRDVVR-ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERF 150 (264)
Q Consensus 72 LIPRpeTE~lv~~~l~~~~~~~~~~~~~~-vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i 150 (264)
--|=-|||+|....|.. .++-+ ||++|+|||-|++.++.+... .|+++||||-|+..+|+||..|+.. +
T Consensus 2 YEPAEDse~LL~~nL~~-------~k~ddeVlEiG~GtGlvair~~~Kg~k-~i~~tDinP~Avk~~~~NA~~N~~~--l 71 (183)
T TIGR00537 2 YEPAEDSELLLEANLRE-------LKPDDEVLEIGAGTGLVAIRLKEKGKK-KILTTDINPFAVKLLRENAKLNNVE--L 71 (183)
T ss_pred CCCCCCHHHHHHHHHHH-------HCCCCEEEEEECCHHHHHHHHHCCCCC-EEEEEECCHHHHHHHHHCCHHCCCC--E
T ss_conf 88864558999998675-------169952899716804899998515882-0788636879999877310002664--0
Q ss_pred CCCCCCCCCCCCC-HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 2222222222210-023332011333210012211111235754332101123210256899999853788789998176
Q gi|254780875|r 151 DTLQSDWFSSVEG-LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY 229 (264)
Q Consensus 151 ~~~~~d~~~~~~~-~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~ 229 (264)
.++++|+++++.+ |||+|+.||||++.++-.... ++++ .|++||.||...+.+++...+.+|+++|...+ +..
T Consensus 72 ~v~~~Dlf~~v~geKFdviLFNpPYlp~~~d~~~g-d~Ld----~A~dGGkdGr~vidrFldelp~~lk~gGrv~l-~~S 145 (183)
T TIGR00537 72 DVLETDLFEGVRGEKFDVILFNPPYLPLEDDEKRG-DYLD----LAIDGGKDGRKVIDRFLDELPEYLKEGGRVQL-IQS 145 (183)
T ss_pred EEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCC-CEEE----EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-EEE
T ss_conf 47611135785555102773078988887652347-6644----33317873057888887656888705998999-960
Q ss_pred CH--HHHHHHHHHHCCCCE
Q ss_conf 67--999999999789805
Q gi|254780875|r 230 NQ--KVDVVRIFESRKLFL 246 (264)
Q Consensus 230 ~q--~~~v~~ll~~~gf~~ 246 (264)
.| .+++.+.+...||..
T Consensus 146 Sl~~e~~~~~kl~~~GF~~ 164 (183)
T TIGR00537 146 SLSDEKDTLDKLDELGFKV 164 (183)
T ss_pred CCCCCHHHHHHHHHCCCCE
T ss_conf 6688688998876158847
No 11
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.91 E-value=2e-25 Score=187.73 Aligned_cols=158 Identities=28% Similarity=0.377 Sum_probs=124.7
Q ss_pred EEEEEEECCCCCHH---HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 37677504620512---235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 62 NVRLTLSSDTFEPR---PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 62 ~~~f~v~~~vLIPR---peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
+++|...||||=++ +-|++|++.+-. ....+|||+|||||+|++.+|+..|.++++++|+|+.|++.|+
T Consensus 1 ~l~~~t~pGVFS~~~lD~Gt~lLl~~l~~--------~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~ 72 (170)
T pfam05175 1 ELTFKTLPGVFSHGRLDIGSRLLLSHLPK--------PLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESAR 72 (170)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHCCCC--------CCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHH
T ss_conf 92899559887999879899999970897--------7899499977648298999999789867985154499999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201100012222222222222221-0023332011333210012211111235754332101123210256899999853
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSSVE-GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHL 217 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~~~-~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L 217 (264)
+|++.|+++ +++++.+|+++.++ ++||+|+|||||-.. +..+....++++..+.++|
T Consensus 73 ~N~~~n~l~-~v~v~~~D~~~~~~~~~fD~IvsNPP~h~g---------------------~~~~~~~~~~~i~~A~~~L 130 (170)
T pfam05175 73 ANLAANGLE-NGEVFWSDLYSAVEPGKFDLIISNPPFHAG---------------------KATDYDVAQRFIAGAARHL 130 (170)
T ss_pred HHHHHHCCC-EEEEEECCCCCCCCCCCEEEEEECCCCCCC---------------------CCCCHHHHHHHHHHHHHHC
T ss_conf 999980998-489997446665778866089989772114---------------------2032899999999999961
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 78878999817667999999999789805899805
Q gi|254780875|r 218 NKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKD 252 (264)
Q Consensus 218 ~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD 252 (264)
+|||.+++.+...+.. ...+++. |..++....
T Consensus 131 ~pgG~l~~V~n~~l~y--~~~l~~~-f~~v~~~~~ 162 (170)
T pfam05175 131 KPGGELWIVANRHLGY--PSLLEEL-FGNVEVLAK 162 (170)
T ss_pred CCCCEEEEEEECCCCC--HHHHHHH-HCCEEEEEE
T ss_conf 6497999999899994--7999986-088899973
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.89 E-value=3.4e-23 Score=173.07 Aligned_cols=185 Identities=24% Similarity=0.301 Sum_probs=143.0
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 42376775046205122356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r 60 FYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 60 F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
|....+.=++.++=+=.|+-+|..++-- ....+|||+|||+|.+++.+|++.+.++++|+|+++.+.+.|++
T Consensus 15 ~~~~~I~q~~~~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~ 86 (248)
T COG4123 15 FKQFFIIQDRCGFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQR 86 (248)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHCCC--------CCCCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 4446997478861664089999765265--------66876988368946899997455877807999817999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHCCHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 01100012222222222222221----002333201133321001--221111123575433210112321025689999
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSVE----GLFDVIVSNPPYIESVIV--DCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV 213 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~~----~~fD~IvsNPPYI~~~~~--~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~ 213 (264)
|.+.|++++|++++++|+-+..+ .+||+|||||||.+.++. .+-.+...+||... ....++..+
T Consensus 87 nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~----------~le~~i~~a 156 (248)
T COG4123 87 NVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITL----------DLEDLIRAA 156 (248)
T ss_pred HHHHCCCHHHEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCC----------CHHHHHHHH
T ss_conf 8861861340167643088765423656547899598987875334867466556632228----------899999999
Q ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE--EEEECCCCC--CEEEEE
Q ss_conf 9853788789998176679999999997898058--998056899--759999
Q gi|254780875|r 214 SRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLV--NAFKDYGGN--DRVLLF 262 (264)
Q Consensus 214 ~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v--~~~kD~~g~--~R~vi~ 262 (264)
.+.||++|.+.+.+.+....++.+++++++|... .....-.|+ .|+++.
T Consensus 157 ~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~ 209 (248)
T COG4123 157 AKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVE 209 (248)
T ss_pred HHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEE
T ss_conf 99746797899995588889999999866987158998627888751699999
No 13
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.84 E-value=1.6e-21 Score=162.01 Aligned_cols=136 Identities=26% Similarity=0.467 Sum_probs=109.2
Q ss_pred EEEEEEECCCCCHH---HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 37677504620512---235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 62 NVRLTLSSDTFEPR---PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 62 ~~~f~v~~~vLIPR---peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
++.+.--||||=.- +-|++|.+.. ......+|||+|||+|+|++.+++..|.++++++|+|..|++.|+
T Consensus 166 ~l~v~slPGVFS~~~lD~GS~lLL~~l--------~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar 237 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTL--------TPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASR 237 (342)
T ss_pred CEEEECCCCCCCCCCCCHHHHHHHHHC--------CCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 715833687578999787999999737--------832488478606781799999998699976999968899999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 20110001222222222222222100233320113332100122111112357543321011232102568999998537
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLN 218 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~ 218 (264)
+|+..|+++. +++.+|.++.++++||+||||||+=.. ........++++..+.++|+
T Consensus 238 ~nl~~N~l~~--~v~~sd~~~~v~~~fD~IvsNPPFH~G---------------------~~~~~~i~~~fi~~A~~~L~ 294 (342)
T PRK09489 238 ATLAANGLEG--EVFASNVFSEIKGRFDMIISNPPFHDG---------------------IQTSLDAAQTLIRGAVRHLN 294 (342)
T ss_pred HHHHHHCCCC--EEEECCCCCCCCCCCCEEEECCCCCCC---------------------CCCCHHHHHHHHHHHHHHHH
T ss_conf 9899809886--899756445655678989968852157---------------------52658999999999998612
Q ss_pred CCCEEEEEEC
Q ss_conf 8878999817
Q gi|254780875|r 219 KDGLCSVEIG 228 (264)
Q Consensus 219 ~~G~l~lEig 228 (264)
|||.+++.-.
T Consensus 295 ~gG~L~iVAN 304 (342)
T PRK09489 295 SGGELRIVAN 304 (342)
T ss_pred CCCEEEEEEC
T ss_conf 4988999981
No 14
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.5e-21 Score=159.81 Aligned_cols=138 Identities=30% Similarity=0.436 Sum_probs=111.2
Q ss_pred EEEEEEEECCCCCHH---HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 237677504620512---23565553101233211012468605664214211233122223332100133322200244
Q gi|254780875|r 61 YNVRLTLSSDTFEPR---PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIA 137 (264)
Q Consensus 61 ~~~~f~v~~~vLIPR---peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A 137 (264)
.+.+|...||||==. .=|++|++..- .....+|||+|||.|.|++++|+..|.++++.+|+|..|++.|
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~--------~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLP--------PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA 198 (300)
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHCC--------CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 75269948987759886838899997377--------5569968870788429999999868987289982669999998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 42011000122222222222222210023332011333210012211111235754332101123210256899999853
Q gi|254780875|r 138 KSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHL 217 (264)
Q Consensus 138 ~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L 217 (264)
++|+..|++++. .++.+|.+++..++||+|+||||.=.- ..+ ++ ..-.+++..+.++|
T Consensus 199 r~Nl~~N~~~~~-~v~~s~~~~~v~~kfd~IisNPPfh~G-------~~v---~~-----------~~~~~ii~~A~~~L 256 (300)
T COG2813 199 RKNLAANGVENT-EVWASNLYEPVEGKFDLIISNPPFHAG-------KAV---VH-----------SLAQEIIAAAARHL 256 (300)
T ss_pred HHHHHHCCCCCC-EEEEECCCCCCCCCCCEEEECCCCCCC-------CCH---HH-----------HHHHHHHHHHHHHH
T ss_conf 876997398763-799812446654400689848884677-------101---67-----------88999999999760
Q ss_pred CCCCEEEEEEC
Q ss_conf 78878999817
Q gi|254780875|r 218 NKDGLCSVEIG 228 (264)
Q Consensus 218 ~~~G~l~lEig 228 (264)
++||.|++.+.
T Consensus 257 ~~gGeL~iVan 267 (300)
T COG2813 257 KPGGELWIVAN 267 (300)
T ss_pred CCCCEEEEEEC
T ss_conf 45977999975
No 15
>KOG3191 consensus
Probab=99.83 E-value=2.8e-21 Score=160.49 Aligned_cols=186 Identities=24% Similarity=0.347 Sum_probs=149.7
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 462051223565553101233211012468605664214211233122223-3321001333222002444201100012
Q gi|254780875|r 69 SDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVS 147 (264)
Q Consensus 69 ~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~ 147 (264)
..|--|--||-+|+|...+ ..+......+.-++|+|||||+++..|++.. |++...++||++.|++.+++.|..|+..
T Consensus 16 ~dVYEPaEDTFlLlDaLek-d~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191 16 SDVYEPAEDTFLLLDALEK-DAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH 94 (209)
T ss_pred HHCCCCCCHHHHHHHHHHH-HHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 5134764105389999999-999986148605899348846599999974177716999549989998879999855775
Q ss_pred CCCCCCCCCCCCCC-CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 22222222222222-10023332011333210012211111235754332101123210256899999853788789998
Q gi|254780875|r 148 ERFDTLQSDWFSSV-EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 148 ~~i~~~~~d~~~~~-~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
++.++.|+++.+ .++.|+++-||||+++++-.--+..+ ..|+-||.||.....+++.+.+.+|.|.|++++-
T Consensus 95 --~~~V~tdl~~~l~~~~VDvLvfNPPYVpt~~~~i~~~~i-----~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191 95 --IDVVRTDLLSGLRNESVDVLVFNPPYVPTSDEEIGDEGI-----ASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred --CCEEEHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHH-----HHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf --205652577663327730899789967698544206778-----8887457541789998876404442867437763
Q ss_pred -ECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEE
Q ss_conf -176679999999997898058998056899759999
Q gi|254780875|r 227 -IGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLF 262 (264)
Q Consensus 227 -ig~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~ 262 (264)
+..+..+++.++++..||....+++--.|.+-..+.
T Consensus 168 ~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~il 204 (209)
T KOG3191 168 ALRANKPKEILKILEKKGYGVRIAMQRKAGGETLSIL 204 (209)
T ss_pred EHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCEEEEE
T ss_conf 0130597999998743365306888874477427899
No 16
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.72 E-value=1.2e-17 Score=136.67 Aligned_cols=125 Identities=26% Similarity=0.319 Sum_probs=100.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHH
Q ss_conf 46860566421421123312222333210013332220024442011000122222222222222210023332011333
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYI 175 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI 175 (264)
.++.+|||+|||||.++|+.++ ....+|+|+|+++.|++.|++|++.|++.+++.+..++. ....++||+|++| |
T Consensus 161 ~~~~~vLDvG~GSGILaIaA~k-lGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~~-~~~~~~~DlvvAN---I 235 (298)
T PRK00517 161 LPGKTVLDVGCGSGILAIAAAK-LGAKPVLAIDIDPQAVEAARENAELNGVDDRLELYLPED-QPLEGKADVIVAN---I 235 (298)
T ss_pred CCCCEEEEECCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCC-CCCCCCCCEEEEE---C
T ss_conf 4688688715770699999997-499849999898999999999999869984268961664-3446764689973---1
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 210012211111235754332101123210256899999853788789998-1766799999999978980589980
Q gi|254780875|r 176 ESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE-IGYNQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 176 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE-ig~~q~~~v~~ll~~~gf~~v~~~k 251 (264)
-.+ .+..++....++|+|||++++- |-..|.+.|.+.+...||..++...
T Consensus 236 la~--------------------------vl~~l~~~~~~~l~~~G~lilSGIl~~~~~~v~~~~~~~g~~~~~~~~ 286 (298)
T PRK00517 236 LAN--------------------------PLIELAPDLAALVKPGGRLILSGILAEQADEVLEAYEDAGFTLDEVAE 286 (298)
T ss_pred CHH--------------------------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 589--------------------------999999999997389979999278488999999999987998978860
No 17
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=99.72 E-value=2e-18 Score=141.72 Aligned_cols=144 Identities=29% Similarity=0.307 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 22356555310123321101246860566421421123312222333210013332220024442011000122222222
Q gi|254780875|r 75 RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQ 154 (264)
Q Consensus 75 RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~ 154 (264)
-++|--||=..++.. -.+.+..+++|+|||||+++|++++ .-...++|+|++|-|++-|+.|+++|++.+++.++.
T Consensus 177 tH~TT~LCLe~L~~~---d~k~kh~~viD~GCGSGIL~IAa~~-LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~ 252 (330)
T TIGR00406 177 THPTTSLCLELLEDL---DLKDKHKKVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 252 (330)
T ss_pred CCHHHHHHHHHHHCC---CCCCCCCEEEEECCCHHHHHHHHHH-HHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 745789999987401---4777665478712671789999997-512311221377289999997687458864576432
Q ss_pred CC----CCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EECC
Q ss_conf 22----222221002333201133321001221111123575433210112321025689999985378878999-8176
Q gi|254780875|r 155 SD----WFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIGY 229 (264)
Q Consensus 155 ~d----~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig~ 229 (264)
.. ..+..++++|+|||| |-. +.++++.....+++|++|++++ =|=.
T Consensus 253 ~~~vPe~~~~~e~~~DViVAN---iLA--------------------------~vi~~L~p~~~~L~~~~G~lilSGIl~ 303 (330)
T TIGR00406 253 ENSVPELEQPIEGKADVIVAN---ILA--------------------------EVIKELYPQFSRLVKPGGHLILSGILE 303 (330)
T ss_pred CCCCCCCCCCCCCCCCEEEEC---CHH--------------------------HHHHHHHHHHHHHCCCCCCEEEHHHHH
T ss_conf 057875345322566757880---024--------------------------578764135513106899657413476
Q ss_pred CHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 6799999999978980589980
Q gi|254780875|r 230 NQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 230 ~q~~~v~~ll~~~gf~~v~~~k 251 (264)
.|.+.|.+.+.+.||..+++.+
T Consensus 304 ~~~~sV~~ay~q~GF~~~~~~~ 325 (330)
T TIGR00406 304 TQAQSVCEAYEQAGFTVVEILK 325 (330)
T ss_pred HHHHHHHHHHHCCCCEEHHHHH
T ss_conf 4799999998557946343464
No 18
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.9e-17 Score=135.22 Aligned_cols=127 Identities=31% Similarity=0.352 Sum_probs=100.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHCCHH
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222221-002333201133
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE-GLFDVIVSNPPY 174 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~-~~fD~IvsNPPY 174 (264)
.++.++||+|||||.++|+.++. ...+++|+|+++.|++.|++|+.+|++...+.....+..+... ++||+||+|
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN--- 236 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN--- 236 (300)
T ss_pred CCCCEEEEECCCHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCCCCCCCEEEEH---
T ss_conf 58987998267815999999981-98668997188899999999999769960220034563000136865689860---
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 321001221111123575433210112321025689999985378878999-817667999999999789805899805
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIGYNQKVDVVRIFESRKLFLVNAFKD 252 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig~~q~~~v~~ll~~~gf~~v~~~kD 252 (264)
|-. +.+..+......+++|+|++++ -|=.+|.+.|.+.+.+.||..++...+
T Consensus 237 ILA--------------------------~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 237 ILA--------------------------EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred HHH--------------------------HHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 527--------------------------89999999999870889369998620758999999998589768689700
No 19
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=99.69 E-value=3.7e-17 Score=133.38 Aligned_cols=123 Identities=29% Similarity=0.324 Sum_probs=94.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHH
Q ss_conf 46860566421421123312222333210013332220024442011000122222222222222210023332011333
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYI 175 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI 175 (264)
.++.+|||+|||||.++|+.++. ...+|+|+|+++.|++.|++|+..|++.+++.+... .+...++||+|++| |
T Consensus 159 ~~~~~vlD~GcGSGILaIaA~kl-Ga~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~~~--~~~~~~~~DlIvAN---I 232 (294)
T pfam06325 159 KPGETVLDVGCGSGILAIAALKL-GAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLP--GDLPEGKADVVVAN---I 232 (294)
T ss_pred CCCCEEEEECCCHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCCCEEEEH---H
T ss_conf 36986785056508999999975-999689998889999999999997699831799644--31556645789841---0
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 21001221111123575433210112321025689999985378878999-81766799999999978980589980
Q gi|254780875|r 176 ESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIGYNQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 176 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig~~q~~~v~~ll~~~gf~~v~~~k 251 (264)
-.+ .+..++....++|+|||++++ -|=..|.+.|.+.++ .||..++..+
T Consensus 233 la~--------------------------~L~~l~~~~~~~l~~~G~lilSGil~~q~~~v~~a~~-~g~~~~~~~~ 282 (294)
T pfam06325 233 LAD--------------------------PLIELAPDIYALVKPGGYLILSGILEEQADDVAEAYS-QGFELITVEE 282 (294)
T ss_pred CHH--------------------------HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH-CCCEEEEEEE
T ss_conf 899--------------------------9999999999973899899991782899999999998-6997743774
No 20
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.64 E-value=9.2e-16 Score=124.17 Aligned_cols=144 Identities=21% Similarity=0.269 Sum_probs=113.0
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHC
Q ss_conf 2468605664214211233122223-33210013332220024442011000122222222222222--21002333201
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIVSN 171 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~IvsN 171 (264)
..++.+|||+|||||-++..+++.. |.++|+|+|+|+.++++|++.+...+...++++.++|..+- -++.||+|+|+
T Consensus 49 ~~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d~sfD~v~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 89999898845776387999999729976799991988999999999997389888507982355688876667650026
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEEC----------------------
Q ss_conf 13332100122111112357543321011232102568999998537887899-9817----------------------
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS-VEIG---------------------- 228 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~-lEig---------------------- 228 (264)
| -+ +++ ....+.+++..+.|+|||.++ +|+.
T Consensus 129 --f----~l-------~~~-------------~d~~~~l~E~~RVLkPGG~l~ilefs~p~~~~~~~~y~~Y~~~ilP~i 182 (239)
T PRK00216 129 --F----GL-------RNV-------------PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLI 182 (239)
T ss_pred --C----EE-------EEC-------------CCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf --1----56-------714-------------867999999998766480899997589997688999999999999999
Q ss_pred --------------------CCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf --------------------667999999999789805899805689975999979
Q gi|254780875|r 229 --------------------YNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 229 --------------------~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
+...+++.+++++.||..++...=..|.--+.+++|
T Consensus 183 g~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~aGF~~v~~~~l~~Gi~~i~~~~K 238 (239)
T PRK00216 183 GKLVSKNAEAYRYLAESIRAFPDQEELAAMMEEAGFERVKYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEC
T ss_conf 99971987888769999998889999999999879967889987887699999989
No 21
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=99.63 E-value=2.4e-16 Score=128.07 Aligned_cols=156 Identities=21% Similarity=0.285 Sum_probs=122.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCC-------CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHC
Q ss_conf 4620512235655531012332-------110124686056642142112331222233321-00133322200244420
Q gi|254780875|r 69 SDTFEPRPETELLVDSALAFSL-------PRIEKRDVVRILDLGTGTGAVCLALLKESPFFK-GVGVDISCKALEIAKSN 140 (264)
Q Consensus 69 ~~vLIPRpeTE~lv~~~l~~~~-------~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~-v~~~Dis~~al~~A~~N 140 (264)
+-|+||--..|+|=+.+-.-+. ....+.+..+|||+|||-|.++-+||+. ++. |+|+|.+++.+++|+.-
T Consensus 49 ~E~y~P~F~~~lLP~~~~~~l~E~QE~~~~~~~~~~G~~vLDVGCGGGlLsE~lAR~--Ga~~V~GID~~~~~i~~Ak~H 126 (275)
T TIGR01983 49 DEVYVPGFSKDLLPEYVAKPLKEDQESIRDELLKDSGLRVLDVGCGGGLLSEPLARL--GANKVTGIDASEENIEVAKLH 126 (275)
T ss_pred CCEEECCCCHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHC--CCCEEEEEECHHHHHHHHHHH
T ss_conf 815608987111725433670102556776341178977998427857888999755--884257752117799999988
Q ss_pred CCCCCCCC----CCCCCCCCCCCCC-----CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 11000122----2222222222222-----10023332011333210012211111235754332101123210256899
Q gi|254780875|r 141 AVTNGVSE----RFDTLQSDWFSSV-----EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIAD 211 (264)
Q Consensus 141 ~~~~~~~~----~i~~~~~d~~~~~-----~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~ 211 (264)
+...++.. +|+..+.++.+-. ++.||+|+| .||..|=| +...|+.
T Consensus 127 a~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~~FD~V~~--------------mEvlEHV~------------dp~~f~~ 180 (275)
T TIGR01983 127 AKKDPLQEALDKKIEYRCTSVEELAEEQHTKKSFDVVTC--------------MEVLEHVP------------DPQAFIK 180 (275)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE--------------EEEEECCC------------CHHHHHH
T ss_conf 873340233111145444307887305578415733764--------------32000027------------8889999
Q ss_pred HHHHHCCCCCEEEEE---------------------------ECCCH---HHHHHHHHH----HCCCCEEEEEECCCCC
Q ss_conf 999853788789998---------------------------17667---999999999----7898058998056899
Q gi|254780875|r 212 GVSRHLNKDGLCSVE---------------------------IGYNQ---KVDVVRIFE----SRKLFLVNAFKDYGGN 256 (264)
Q Consensus 212 ~~~~~L~~~G~l~lE---------------------------ig~~q---~~~v~~ll~----~~gf~~v~~~kD~~g~ 256 (264)
.+.++|||||.++|= |.+.+ ..++.++|. ++|+.. +|..|.
T Consensus 181 ~c~~llkPgG~lF~STINRt~kS~~~aIvgAEYiLr~vPKGTH~~~KFi~P~EL~~~l~d~N~~~~l~~----~~~~G~ 255 (275)
T TIGR01983 181 ACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRWVPKGTHDWEKFIKPSELTSWLEDDNRSAGLRV----KDVKGL 255 (275)
T ss_pred HHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEE----EEECCE
T ss_conf 999850899848973000218999999999999851689872471015387999999851264676489----975050
No 22
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=99.59 E-value=5e-15 Score=119.35 Aligned_cols=201 Identities=16% Similarity=0.206 Sum_probs=133.6
Q ss_pred EEEEEEE-EEECCCCCH----HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4423767-750462051----22356555310123321101246860566421421123312222333210013332220
Q gi|254780875|r 59 DFYNVRL-TLSSDTFEP----RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKA 133 (264)
Q Consensus 59 ~F~~~~f-~v~~~vLIP----RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~a 133 (264)
.+||++. .+.++-|+| |-+==++++-.|... ........++||+|||.-||=-.|+....+|+++|+||++.+
T Consensus 24 ~~ygl~~wdiP~~~LcP~iP~R~nYIh~l~DLL~~~--~~~~~~~v~gLDIGtGAscIYPLLg~~~y~W~fvgtDId~~s 101 (254)
T pfam05971 24 EFYGVSIWDIPDGFLCPPVPGRADYIHWVADLLGHQ--DSDIPTLRRALDIGTGANCIYPLLGVTEYGWRFVGSEVDPQS 101 (254)
T ss_pred HHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEECCHHH
T ss_conf 865987400798883899986889999999997542--788777746777336641577754040048637976279899
Q ss_pred HHHHHHCCCCC-CCCCCCCCCC----CCCCCCC---CCHHHHHHHCCHHHHHHC-CC-CCCCCCCCCCCCCCCCCCCC--
Q ss_conf 02444201100-0122222222----2222222---100233320113332100-12-21111123575433210112--
Q gi|254780875|r 134 LEIAKSNAVTN-GVSERFDTLQ----SDWFSSV---EGLFDVIVSNPPYIESVI-VD-CLGLEVRDFDPRISLDGGID-- 201 (264)
Q Consensus 134 l~~A~~N~~~~-~~~~~i~~~~----~d~~~~~---~~~fD~IvsNPPYI~~~~-~~-~l~~~v~~~EP~~AL~gg~d-- 201 (264)
++.|++|++.| +++++|++.+ +.+|..+ .++||+.+||||+-.+.+ .. ......++-.|... |||.+
T Consensus 102 l~~A~~nv~~N~~L~~~I~l~~q~~~~~if~gii~~~e~fdftmCNPPF~~S~~ea~~~~~rk~~~~~p~~~-f~G~~~E 180 (254)
T pfam05971 102 LNSAKAIVEANPNLSDAIELRRQPQSTLIFNGLIGENERYDFTLCNPPFHASLAEAKGGSSRKPGRPPPSLN-FGGQIAE 180 (254)
T ss_pred HHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCC-CCCCCCE
T ss_conf 999999998583323116999637811022344687660666303798667888887776446678997303-5675306
Q ss_pred ------CCCCHHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHCCCCEEEEEECCCCC-CEEEEE
Q ss_conf ------32102568999998537887899981766-79999999997898058998056899-759999
Q gi|254780875|r 202 ------GLSHYRTIADGVSRHLNKDGLCSVEIGYN-QKVDVVRIFESRKLFLVNAFKDYGGN-DRVLLF 262 (264)
Q Consensus 202 ------Gl~~~~~ii~~~~~~L~~~G~l~lEig~~-q~~~v~~ll~~~gf~~v~~~kD~~g~-~R~vi~ 262 (264)
-..|++++|+++..+-+.-+|+--=+|.. ....+.+.|++.|-..+.+..=.+|+ .|.+++
T Consensus 181 l~~~GGE~~Fi~rMI~ES~~~~~~v~WfTsmvgKks~l~~l~~~L~~~~~~~~~~~em~QG~k~rw~vA 249 (254)
T pfam05971 181 LWCEGGEAAFIKKMIEESLQFAKQVRWFTTLVSKGCNLPPLKEELRILGAPKVTVTEMAQGQKQSRFIA 249 (254)
T ss_pred EEECCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEE
T ss_conf 674684599999999999986447579831366621499999999976997799998327985149999
No 23
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.59 E-value=6.9e-16 Score=124.98 Aligned_cols=145 Identities=21% Similarity=0.230 Sum_probs=101.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 65553101233211012468605664214211233122223332100133322200244420110001222222222222
Q gi|254780875|r 79 ELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF 158 (264)
Q Consensus 79 E~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~ 158 (264)
|.|.-..+... .-++...++|.+||||.|+|..+...++..++|+|+++++++.|++|++.+|+.+++.+.++|..
T Consensus 14 ~~lAa~l~~la----~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~ 89 (171)
T pfam01170 14 ATLARAMVNLA----GWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAA 89 (171)
T ss_pred HHHHHHHHHHH----CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 99999999985----89999978868998789999999961358953675879999999999998289984699976665
Q ss_pred CC--CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE-CCCHHHHH
Q ss_conf 22--2100233320113332100122111112357543321011232102568999998537887899981-76679999
Q gi|254780875|r 159 SS--VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI-GYNQKVDV 235 (264)
Q Consensus 159 ~~--~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi-g~~q~~~v 235 (264)
+. ..+.||+|||||||=..- .... +-.++|+.+.....+.++ ||.++-+ +.. .+
T Consensus 90 ~l~~~~~~~d~Iv~nPPYG~r~---~~~~---------------~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~---~~ 146 (171)
T pfam01170 90 DLPLLNGSVDTIVTDPPYGIRI---GSKG---------------ALEKLYPAFLDEAKRVLR--GRLVFATPEKK---DF 146 (171)
T ss_pred HCCCCCCCCEEEEECCCCCCCC---CCHH---------------HHHHHHHHHHHHHHHHCC--CCEEEEEECCH---HH
T ss_conf 3879878831899889820113---6545---------------699999999999998689--97899996868---99
Q ss_pred HHHHHHCCCCEEEEE
Q ss_conf 999997898058998
Q gi|254780875|r 236 VRIFESRKLFLVNAF 250 (264)
Q Consensus 236 ~~ll~~~gf~~v~~~ 250 (264)
.+.++..+++..+.+
T Consensus 147 ~k~~~~~~~r~~~~~ 161 (171)
T pfam01170 147 EKAARERGLRKKHEF 161 (171)
T ss_pred HHHHCCHHHCCEEEE
T ss_conf 998550012350489
No 24
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=99.59 E-value=7.4e-15 Score=118.21 Aligned_cols=143 Identities=21% Similarity=0.281 Sum_probs=111.0
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHC
Q ss_conf 2468605664214211233122223-33210013332220024442011000122222222222222--21002333201
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIVSN 171 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~IvsN 171 (264)
..++.+|||+|||||-++..+++.. +..+++|+|+|+.++++|+++++..+. .++++.++|..+- -++.||+|+|+
T Consensus 45 ~~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S~~ML~~a~~k~~~~~~-~~i~~~~~da~~lpf~d~sfD~v~~~ 123 (233)
T pfam01209 45 VKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGK-YNIEFLQGNAEELPFEDDSFDIVTIS 123 (233)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 99999899825405889999999849997499996999999999999985699-98369982166688666565731421
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEEC----------------------
Q ss_conf 13332100122111112357543321011232102568999998537887899-9817----------------------
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS-VEIG---------------------- 228 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~-lEig---------------------- 228 (264)
| .++++ ....+.+++..+.|||||.++ +|+.
T Consensus 124 --f-----------glrn~-------------~d~~~al~E~~RVLKPGG~l~ilefs~P~~~~~~~~~~~Y~~~ilP~i 177 (233)
T pfam01209 124 --F-----------GLRNF-------------PDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFKYVMPFM 177 (233)
T ss_pred --H-----------HHHCC-------------CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf --0-----------12125-------------888999999998727897899997888877799999999995359997
Q ss_pred --------------------CCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf --------------------667999999999789805899805689975999979
Q gi|254780875|r 229 --------------------YNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 229 --------------------~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
+...+++.+++++.||..++...=..|.--+-++.|
T Consensus 178 g~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~~GF~~v~~~~l~~Gi~~i~~g~K 233 (233)
T pfam01209 178 GKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESLTGGIAAIHWGIK 233 (233)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEC
T ss_conf 79984998998519999998799999999999879977789987773789999979
No 25
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=99.59 E-value=7.8e-15 Score=118.06 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=135.6
Q ss_pred EEEEEEE-EEECCCCCH----HHHHHHHHHHHCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4423767-750462051----2235655531012332-110124686056642142112331222233321001333222
Q gi|254780875|r 59 DFYNVRL-TLSSDTFEP----RPETELLVDSALAFSL-PRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCK 132 (264)
Q Consensus 59 ~F~~~~f-~v~~~vLIP----RpeTE~lv~~~l~~~~-~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~ 132 (264)
.+||+++ -+..+-|+| |.+==++++-.|.... ......+..++||+|||.-||=-.|....-+|+++|+||++.
T Consensus 73 ~~ygl~~WdiP~~~LcPpIPgR~nYIh~iaDLL~~~~~~~~p~g~~v~gLDIGtGAncIYPLLG~~~ygW~fvgtDId~~ 152 (326)
T PRK11727 73 HFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNSGVIPKGANVRVLDIGVGANCIYPIIGVQEYGWRFVGSDIDPQ 152 (326)
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCEECCCEEEEECCCHH
T ss_conf 74397503388877289998537799999998611366778888872367505674311210143001763799617989
Q ss_pred CHHHHHHCCCCC-CCCCCCCCCC-C---CCCCCC---CCHHHHHHHCCHHHHHHC---------CCCCCCCC-CCCCCCC
Q ss_conf 002444201100-0122222222-2---222222---100233320113332100---------12211111-2357543
Q gi|254780875|r 133 ALEIAKSNAVTN-GVSERFDTLQ-S---DWFSSV---EGLFDVIVSNPPYIESVI---------VDCLGLEV-RDFDPRI 194 (264)
Q Consensus 133 al~~A~~N~~~~-~~~~~i~~~~-~---d~~~~~---~~~fD~IvsNPPYI~~~~---------~~~l~~~v-~~~EP~~ 194 (264)
|++.|++|++.| +++++|++.. . ++|..+ .+.||+.+||||+-.+.+ +.++..+- ..-.|.
T Consensus 153 sl~~A~~~v~~N~~L~~~I~lr~q~~~~~If~gii~~~e~fdftmCNPPF~~S~eea~~gt~Rk~~nl~~~~~~~~~~~- 231 (326)
T PRK11727 153 ALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDLTLCNPPFHASAAEARAGSERKLRNLGKNKPKAAKPV- 231 (326)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-
T ss_conf 9999999998482010527999627867653245887665777851898767899997420454432033678888764-
Q ss_pred CCCCCCCC--------CCCHHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHCCCCEEEEEECCCCC--CEEEEEE
Q ss_conf 32101123--------2102568999998537887899981766-79999999997898058998056899--7599997
Q gi|254780875|r 195 SLDGGIDG--------LSHYRTIADGVSRHLNKDGLCSVEIGYN-QKVDVVRIFESRKLFLVNAFKDYGGN--DRVLLFC 263 (264)
Q Consensus 195 AL~gg~dG--------l~~~~~ii~~~~~~L~~~G~l~lEig~~-q~~~v~~ll~~~gf~~v~~~kD~~g~--~R~vi~~ 263 (264)
.=|||... +.|++++|.++..+-+.-+|+--=+|.. ....+.+.|++.|-..+.+..=.+|+ -|+|.++
T Consensus 232 lnfgG~~~EL~c~GGE~~FI~rMI~ES~~~~~~v~WfTslvgKksnL~~l~~~L~~~~~~~~~~~em~QG~k~sR~iAWs 311 (326)
T PRK11727 232 LNFGGQNAELWCEGGEVAFIKKMIEESVAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIAWT 311 (326)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEE
T ss_conf 24577642478468389999999999998730748983013562039999999997699779999820687102899985
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.59 E-value=1.9e-15 Score=122.06 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=99.1
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHCCHHHHHH
Q ss_conf 056642142112331222233321001333222002444201100012222222222222-2210023332011333210
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS-SVEGLFDVIVSNPPYIESV 178 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~-~~~~~fD~IvsNPPYI~~~ 178 (264)
+|||+|||+|..++.+|+++|+++++|+|+|+..++.|++++...|+.+++.+.++|... ++++.||+|+|. .
T Consensus 2 rVLDiGCG~G~~~~~LA~~~p~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d~FD~V~s~------e 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGF------E 75 (224)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCEEEHH------H
T ss_conf 0899836688889999997799889999799999999999999729986514785211039999983567685------3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EEC---------------CCHHHHHHHHHHHC
Q ss_conf 01221111123575433210112321025689999985378878999-817---------------66799999999978
Q gi|254780875|r 179 IVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIG---------------YNQKVDVVRIFESR 242 (264)
Q Consensus 179 ~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig---------------~~q~~~v~~ll~~~ 242 (264)
+..|=| ....++.++.++|||||.+++ ++- ..-.++-.+++..+
T Consensus 76 --------vl~Hi~------------D~~~~l~ei~RvLKPGG~lviaD~~~n~~~~i~~~~~~~~~~t~~eW~~ll~~~ 135 (224)
T smart00828 76 --------VIHHIK------------DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARN 135 (224)
T ss_pred --------HHHCCC------------CHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf --------576539------------999999999987179849999985337888777876300247899999999767
Q ss_pred CCCEEEE
Q ss_conf 9805899
Q gi|254780875|r 243 KLFLVNA 249 (264)
Q Consensus 243 gf~~v~~ 249 (264)
+|..++.
T Consensus 136 ~l~~~~~ 142 (224)
T smart00828 136 NLRVVEG 142 (224)
T ss_pred CCEEEEE
T ss_conf 8536652
No 27
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=99.57 E-value=3e-15 Score=120.81 Aligned_cols=125 Identities=19% Similarity=0.259 Sum_probs=97.0
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCHHHHHHHC
Q ss_conf 246860566421421123312222333210013332220024442011000122222222222222---21002333201
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---VEGLFDVIVSN 171 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---~~~~fD~IvsN 171 (264)
..++.+|||+|||.|.++..+|+. +++|+|+|.|++++++|+..+...++. +++.+++..+. .+++||+|+|
T Consensus 46 ~l~G~~ILDVGCGgG~lse~LAr~--Ga~VtGID~S~~~I~~Ar~ha~~~~l~--i~y~~~~~e~l~~~~~~~FDvV~~- 120 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GATVTGIDASEENIEVARLHALESGLK--IDYRQITAEELAAEHPGQFDVVTC- 120 (233)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHCCCC--CEEEECCHHHHHHHCCCCEEEEEE-
T ss_conf 668998999755897112899967--997999879989999999985644345--116751476654305786347744-
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-------------------------
Q ss_conf 1333210012211111235754332101123210256899999853788789998-------------------------
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE------------------------- 226 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE------------------------- 226 (264)
.||..|= .....++..+.++|||||.+++-
T Consensus 121 -------------~EVlEHV------------~d~~~~l~~~~rlLKPGG~l~lsTiNrt~~S~l~~i~~AEyil~~vP~ 175 (233)
T PRK05134 121 -------------MEMLEHV------------PDPASFIRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYILRMLPK 175 (233)
T ss_pred -------------EHHHHHC------------CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf -------------2147753------------899999999999738991499972678989999999999888604999
Q ss_pred --ECCC---HHHHHHHHHHHCCCCEEEE
Q ss_conf --1766---7999999999789805899
Q gi|254780875|r 227 --IGYN---QKVDVVRIFESRKLFLVNA 249 (264)
Q Consensus 227 --ig~~---q~~~v~~ll~~~gf~~v~~ 249 (264)
|.++ ..+++.++++++|+....+
T Consensus 176 gTH~w~kFi~P~el~~~l~~~~~~~~~~ 203 (233)
T PRK05134 176 GTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred CCCCHHHCCCHHHHHHHHHHCCCEEEEE
T ss_conf 9858666799999999999879957210
No 28
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.57 E-value=4.5e-15 Score=119.64 Aligned_cols=131 Identities=23% Similarity=0.323 Sum_probs=103.8
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHH
Q ss_conf 12468605664214211233122223-33210013332220024442011000122222222222222--2100233320
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIVS 170 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~Ivs 170 (264)
.-++.-+|||||||+|...+..|+.. |..+|+|+|+++.+++.|++|+.+.++. |++|.++|..+. -++.||+|+|
T Consensus 70 ~l~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~-NVeF~~Gdae~LPl~D~SfDvViS 148 (258)
T PRK11873 70 ELKPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADGSVDVIIS 148 (258)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCCEEEEEE
T ss_conf 5799998999478877759999998699977999859999999999999975997-559999555313689883519988
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-----------------------E
Q ss_conf 11333210012211111235754332101123210256899999853788789998-----------------------1
Q gi|254780875|r 171 NPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE-----------------------I 227 (264)
Q Consensus 171 NPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE-----------------------i 227 (264)
| . |.++-| .-.+.+.++.++|||||.+.+- -
T Consensus 149 n------c--------Vlnl~p------------Dk~~vl~E~~RVLKPGGRl~ISDiv~~~~lP~~~r~d~~l~~~Cia 202 (258)
T PRK11873 149 N------C--------VINLSP------------DKERVFREAFRVLKPGGRFAISDVVLTGELPEELRNDAALYAGCVA 202 (258)
T ss_pred C------C--------EEECCC------------CHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHCHHHHHCCCC
T ss_conf 2------4--------676079------------8799999999962889789999741277799999859898731203
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 766799999999978980589980
Q gi|254780875|r 228 GYNQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 228 g~~q~~~v~~ll~~~gf~~v~~~k 251 (264)
|.-+.++..+++++.||..|++..
T Consensus 203 GA~~~~~~~~~l~~aGF~~i~i~~ 226 (258)
T PRK11873 203 GALSVEEYLAMLAEAGFVDITIEP 226 (258)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 668599999999976998329985
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=3.1e-15 Score=120.72 Aligned_cols=116 Identities=21% Similarity=0.219 Sum_probs=87.7
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHC
Q ss_conf 012468605664214211233122223332100133322200244420110001222222222222222-1002333201
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-EGLFDVIVSN 171 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-~~~fD~IvsN 171 (264)
....++.+|||+|||+|.+.-.|+..+|+++|+|+|.|+.+++.|+++. .++.|.++|..+.. .+.||+|+||
T Consensus 27 l~~~~~~~vlDlGCG~G~~t~~l~~r~p~a~v~GiD~S~~Ml~~Ar~~~------~~~~f~~~D~~~~~~~~~~D~ifSN 100 (252)
T PRK01683 27 VPLENVEYVADLGCGPGNSTALLHQRWPAARITGIDSSPAMLAEARQAL------PDCQFVEADIRNWQPEQALDLIYAN 100 (252)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC------CCCEEEECCHHCCCCCCCCCEEEEE
T ss_conf 8888999899937749899999999779987999989899999999758------9983872504207876787889561
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 133321001221111123575433210112321025689999985378878999817667999999999
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFE 240 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~ 240 (264)
..++.+ .+| ..++....+.|+|||++.+|++.+..+....++.
T Consensus 101 ------aalhW~----~d~----------------~~~~~~~~~~L~PGG~la~Q~p~n~~~~sh~l~~ 143 (252)
T PRK01683 101 ------ASLQWL----PDH----------------YELFPHLVSLLAPQGVLAVQMPDNWLEPSHVLMR 143 (252)
T ss_pred ------EEHHHC----CCH----------------HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf ------004507----877----------------9999999982487879999889875769999999
No 30
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.50 E-value=5.5e-14 Score=112.48 Aligned_cols=148 Identities=20% Similarity=0.244 Sum_probs=106.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 77504620512235655531012332110124686056642142112331222233321001333222002444201100
Q gi|254780875|r 65 LTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN 144 (264)
Q Consensus 65 f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~ 144 (264)
.++..+|.|-..|.-.++-..| ...+...++|+|||||++++..|+..|+.+|+++|.++++++.+++|++++
T Consensus 5 ~F~r~~~pmTK~EIRai~LskL-------~l~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~f 77 (186)
T PRK08287 5 LFLRGKVPMTKEEVRALSLSKL-------ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRF 77 (186)
T ss_pred HHCCCCCCCCHHHHHHHHHHHC-------CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 6234999977899999999971-------999999999957887789999999789988999937989999999989972
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 01222222222222222100233320113332100122111112357543321011232102568999998537887899
Q gi|254780875|r 145 GVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS 224 (264)
Q Consensus 145 ~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~ 224 (264)
++. ++++++++..+.+.+ .|.....||..|. ...|++.+...|+|+|.++
T Consensus 78 g~~-nv~~i~g~Ap~~l~~---------------------------~pD~vFIGGsgg~--l~~il~~~~~~L~~gGriV 127 (186)
T PRK08287 78 GCG-NIDIIPGEAPITLTG---------------------------KADAIFMGGSGGH--LTAIIDWALGHLHPGGRLV 127 (186)
T ss_pred CCC-CEEEEECCCCHHCCC---------------------------CCCEEEEECCCCC--HHHHHHHHHHHCCCCCEEE
T ss_conf 999-879993778110357---------------------------8984999747898--8999999997579998999
Q ss_pred EEE-CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 981-7667999999999789805899
Q gi|254780875|r 225 VEI-GYNQKVDVVRIFESRKLFLVNA 249 (264)
Q Consensus 225 lEi-g~~q~~~v~~ll~~~gf~~v~~ 249 (264)
+-. --.......+++++.||..+++
T Consensus 128 inavtlet~~~a~~~~~~~~~~~~e~ 153 (186)
T PRK08287 128 LNFILQENLHSALAHLEKIGACELDC 153 (186)
T ss_pred EEEEEHHHHHHHHHHHHHCCCCCEEE
T ss_conf 98260877999999999769976159
No 31
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=99.50 E-value=1.7e-14 Score=115.89 Aligned_cols=139 Identities=21% Similarity=0.295 Sum_probs=110.8
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCC---------CCCCCCCCCCCCCHHHHHHCCCCCC---CCCCCCCCCCCCCC
Q ss_conf 10124686056642142112331222233---------3210013332220024442011000---12222222222222
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAVCLALLKESP---------FFKGVGVDISCKALEIAKSNAVTNG---VSERFDTLQSDWFS 159 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i~i~la~~~~---------~~~v~~~Dis~~al~~A~~N~~~~~---~~~~i~~~~~d~~~ 159 (264)
..+.+++.+|||+|||||=+++.+++..| .++|+++|+|+++|++|++.+...+ ...+++|.++|..+
T Consensus 38 ~~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~ 117 (242)
T TIGR01934 38 QLEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEA 117 (242)
T ss_pred HCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHC
T ss_conf 23688889778872383999999986357555335776337898707988999998741342003332164211000550
Q ss_pred --CCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEE---------
Q ss_conf --22100233320113332100122111112357543321011232102568999998537887899-981---------
Q gi|254780875|r 160 --SVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS-VEI--------- 227 (264)
Q Consensus 160 --~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~-lEi--------- 227 (264)
+-++.||.+. +.-.+|+. ..|.+-+++..++|||||.|+ ||.
T Consensus 118 LPF~D~sFD~~T-------------iaFGlRN~-------------~d~~~aL~E~~RVLKpgG~l~iLEf~~P~~~~~~ 171 (242)
T TIGR01934 118 LPFEDNSFDAVT-------------IAFGLRNV-------------TDIQKALREMYRVLKPGGRLVILEFSKPANGAFL 171 (242)
T ss_pred CCCCCCCEEEEE-------------EECCCCCC-------------CCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
T ss_conf 879986244466-------------40255474-------------6867898773110188987998407867641688
Q ss_pred ----------------------------------CCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf ----------------------------------76679999999997898058998056899
Q gi|254780875|r 228 ----------------------------------GYNQKVDVVRIFESRKLFLVNAFKDYGGN 256 (264)
Q Consensus 228 ----------------------------------g~~q~~~v~~ll~~~gf~~v~~~kD~~g~ 256 (264)
.+-+.+++.+++++.||..++.+.=.+|.
T Consensus 172 ~~~Y~~Y~~~v~P~~G~~~s~~~~aY~YL~eSi~~FP~~~~l~~~~~~aGF~~~~~~~l~fGv 234 (242)
T TIGR01934 172 KKFYKFYLKNVLPSIGGLISKNKEAYEYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGV 234 (242)
T ss_pred HHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCHHHH
T ss_conf 999998850003777777407886657788998753898899999997386321100303552
No 32
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.46 E-value=1.2e-13 Score=110.28 Aligned_cols=109 Identities=24% Similarity=0.310 Sum_probs=86.6
Q ss_pred HHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 98974983768536314423767750462051223565553101233211012468605664214211233122223332
Q gi|254780875|r 43 VRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFF 122 (264)
Q Consensus 43 ~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~ 122 (264)
.|+-...|+..|- ..|=.=|. -.++.++.++... ....+.+|||+|||+|.+++.+|.+ ++
T Consensus 26 ~rltsd~pVs~vr-------------~tVR~Gr~---~mr~~~l~wl~~~-~dl~G~rVLDaGCGtG~la~~LA~~--Ga 86 (230)
T PRK07580 26 ARIYSDAPVSKVR-------------ATVRAGHQ---RMRDTVLSWLPAD-GDLTGLSILDAGCGTGSLSIPLARR--GA 86 (230)
T ss_pred HHHHCCCCCHHHH-------------HHHHHHHH---HHHHHHHHHHHHC-CCCCCCEEEECCCCCCHHHHHHHHC--CC
T ss_conf 9970889725999-------------99997699---9999999973105-9978998988187867879999977--99
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 1001333222002444201100012222222222222221002333201
Q gi|254780875|r 123 KGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSN 171 (264)
Q Consensus 123 ~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsN 171 (264)
+|+|+|+|+.+++.|++.+...++.++++|..+| ++...|.||.|+|-
T Consensus 87 ~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gD-le~~~G~FD~Vv~m 134 (230)
T PRK07580 87 KVVASDISPQMVEEARERAPEAGLDGNITFEVGD-LESLLGSFDTVVCL 134 (230)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECC-CCCCCCCCCCHHHC
T ss_conf 8999838999999999755862787675389667-65457986602333
No 33
>PRK08317 hypothetical protein; Provisional
Probab=99.45 E-value=2e-13 Score=108.84 Aligned_cols=130 Identities=20% Similarity=0.226 Sum_probs=97.4
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHH
Q ss_conf 012468605664214211233122223-33210013332220024442011000122222222222222--210023332
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIV 169 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~Iv 169 (264)
+.-+++.+|||+|||+|.++..++... |+.+|+|+|+|+.+++.|++.+...+ .++++.++|..+. -++.||+|+
T Consensus 15 L~l~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~lp~~d~sfD~v~ 92 (241)
T PRK08317 15 LAVQPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLL--SNVEFVRGDADGLPFPDESFDAVR 92 (241)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCEEE
T ss_conf 699997999996641749999999974999789999698899999999986228--964999554643589888704562
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EECCC------------------
Q ss_conf 01133321001221111123575433210112321025689999985378878999-81766------------------
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIGYN------------------ 230 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig~~------------------ 230 (264)
|. ... .|= ....+.+.++.+.|||||++++ |..++
T Consensus 93 ~~------~~l--------~h~------------~d~~~~l~e~~RvLkPGG~~vi~d~Dw~~~~~~~~~~~~~~~i~~~ 146 (241)
T PRK08317 93 SD------RVL--------QHL------------EDPRRALAEMARVLRPGGRAVVLDTDWDTLVIHSGDRALMRKILNF 146 (241)
T ss_pred HH------HHH--------HHC------------CCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 21------157--------622------------5899999999998188838999966788674289888999999999
Q ss_pred ---------HHHHHHHHHHHCCCCEEEEE
Q ss_conf ---------79999999997898058998
Q gi|254780875|r 231 ---------QKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 231 ---------q~~~v~~ll~~~gf~~v~~~ 250 (264)
-+.++..++++.||.++++.
T Consensus 147 ~~~~~~~~~~gr~L~~~l~~aG~~~v~~~ 175 (241)
T PRK08317 147 WSDHFANPWLGRRLPGLFREAGLTDIEVE 175 (241)
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99747892078999999998699056888
No 34
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.44 E-value=3.8e-13 Score=106.94 Aligned_cols=132 Identities=13% Similarity=0.117 Sum_probs=98.2
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 10124686056642142112331222233321001333222002444201100012222222222222221002333201
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSN 171 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsN 171 (264)
++.-.+...++|+|||||.+++..|+..|+.+|+|+|.++++++++++|++++++. ++++++++..+.+.
T Consensus 35 kL~l~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfgv~-nv~ii~g~ape~L~--------- 104 (196)
T PRK07402 35 QLRLEPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFGVK-NVEVIEGSAPECLA--------- 104 (196)
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHH---------
T ss_conf 70899999999947887799999998789988999976888999999989972999-87999726366684---------
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE-CCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 13332100122111112357543321011232102568999998537887899981-76679999999997898058998
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI-GYNQKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi-g~~q~~~v~~ll~~~gf~~v~~~ 250 (264)
.+. -.|.....||.. -+..+++.+...|+|+|.+++-. --.-...+.+.+++.++..+++.
T Consensus 105 ----------~l~-----p~pD~vFIGGg~---~l~~il~~~~~~L~pgGriVinaitLetl~~~~~~l~~~~~~~~e~~ 166 (196)
T PRK07402 105 ----------QLA-----PAPDRICIEGGR---PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNVEVV 166 (196)
T ss_pred ----------HCC-----CCCCEEEECCCC---CHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCEEEE
T ss_conf ----------089-----999999984896---88999999998679998999985709889999999997388763799
Q ss_pred E
Q ss_conf 0
Q gi|254780875|r 251 K 251 (264)
Q Consensus 251 k 251 (264)
+
T Consensus 167 q 167 (196)
T PRK07402 167 Q 167 (196)
T ss_pred E
T ss_conf 9
No 35
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=99.41 E-value=1.3e-13 Score=110.05 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=99.4
Q ss_pred EEEEEEEECC--CCCHHHHHHHH--HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 2376775046--20512235655--5310123321101246860566421421123312222333210013332220024
Q gi|254780875|r 61 YNVRLTLSSD--TFEPRPETELL--VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEI 136 (264)
Q Consensus 61 ~~~~f~v~~~--vLIPRpeTE~l--v~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~ 136 (264)
.|.+|.+|+. -+-||--||-. ++. .+++-+|+|+.||.|..++.+|+..+..+|+|+|+||.|++.
T Consensus 70 ~G~~f~~D~~kvyfs~rl~~Er~ri~~~----------~~~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~ 139 (199)
T pfam02475 70 NGCRFKIDVSKVYFSPRLIGERERIAKL----------VKEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKY 139 (199)
T ss_pred CCCEEEEECCEEEEECCCHHHHHHHHHH----------CCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 7929998442079954765889999974----------489988998168865778998640786489998289999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 44201100012222222222222221-00233320113332100122111112357543321011232102568999998
Q gi|254780875|r 137 AKSNAVTNGVSERFDTLQSDWFSSVE-GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSR 215 (264)
Q Consensus 137 A~~N~~~~~~~~~i~~~~~d~~~~~~-~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~ 215 (264)
+++|++.|+++++++++++|..+... ++||.|+.|||.-. ..++..+..
T Consensus 140 l~~N~~lN~v~~~i~~~~gD~~~~~~~~~~DrvimnlP~~a------------------------------~~fL~~A~~ 189 (199)
T pfam02475 140 LKENIKLNKVEGVISPILGDVRDVILEGVADRVIMNLPKSA------------------------------HEFLDKALR 189 (199)
T ss_pred HHHHHHHHCCCCCEEEEECCHHHHCCCCCCCEEEECCCCCH------------------------------HHHHHHHHH
T ss_conf 99999980999836999287878604674009994897316------------------------------999999999
Q ss_pred HCCCCCEEE
Q ss_conf 537887899
Q gi|254780875|r 216 HLNKDGLCS 224 (264)
Q Consensus 216 ~L~~~G~l~ 224 (264)
.|++||++-
T Consensus 190 ~lk~gg~iH 198 (199)
T pfam02475 190 AVKDGGVIH 198 (199)
T ss_pred HHCCCCEEE
T ss_conf 855898983
No 36
>PRK11036 putative metallothionein SmtA; Provisional
Probab=99.41 E-value=1.5e-13 Score=109.52 Aligned_cols=132 Identities=23% Similarity=0.320 Sum_probs=102.3
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHCC
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222---2210023332011
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS---SVEGLFDVIVSNP 172 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~---~~~~~fD~IvsNP 172 (264)
..+++|||+|||+|.++..+|.. +.+|+++|+|+++++.|++++...|+..++.++++++-+ ..++.||+|+|.
T Consensus 43 ~~plrVLDvG~G~G~~a~~lA~~--Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~~~fDlVlcH- 119 (256)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKMAEL--GHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFH- 119 (256)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEE-
T ss_conf 99983998379877989999977--997998669999999999998864966127988568998854236886678651-
Q ss_pred HHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC----------------------
Q ss_conf 333210012211111235--75433210112321025689999985378878999817----------------------
Q gi|254780875|r 173 PYIESVIVDCLGLEVRDF--DPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG---------------------- 228 (264)
Q Consensus 173 PYI~~~~~~~l~~~v~~~--EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig---------------------- 228 (264)
. |..| ||. ..+....+.|+|||++-+-..
T Consensus 120 -----a--------VLE~v~dP~--------------~~l~~l~~~lkPGG~lSLmfyN~~alv~~n~l~Gnf~~a~~~~ 172 (256)
T PRK11036 120 -----A--------VLEWVADPK--------------SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGM 172 (256)
T ss_pred -----H--------HHHHCCCHH--------------HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHC
T ss_conf -----3--------677237899--------------9999999975899379998428516999999825899997306
Q ss_pred ------------CCHHHHHHHHHHHCCCCE-----EEEEECCCCCC
Q ss_conf ------------667999999999789805-----89980568997
Q gi|254780875|r 229 ------------YNQKVDVVRIFESRKLFL-----VNAFKDYGGND 257 (264)
Q Consensus 229 ------------~~q~~~v~~ll~~~gf~~-----v~~~kD~~g~~ 257 (264)
+...++|.+++++.||.. |++..||....
T Consensus 173 ~~~~~~~LtP~~p~~p~~V~~~l~~~g~~i~~~~GIRvF~Dy~~~~ 218 (256)
T PRK11036 173 PKRKKRTLSPQYPRDPAQVYQWLEEAGWQIMGKTGVRVFHDYLRNK 218 (256)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEEECCCCC
T ss_conf 3445521689999999999999997798277667899976056775
No 37
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=99.40 E-value=2.5e-13 Score=108.16 Aligned_cols=143 Identities=17% Similarity=0.242 Sum_probs=92.5
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------CHHHHHHHCCH
Q ss_conf 056642142112331222233321001333222002444201100012222222222222221------00233320113
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE------GLFDVIVSNPP 173 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~------~~fD~IvsNPP 173 (264)
.|||++||+|..+|.+|+.+. +|+|+|+|+.++++|+.||+.+|+++|++|+++|||+.++ .+||+|++.||
T Consensus 3 ivlD~fcG~Ggn~I~fA~~~~--~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf~sPP 80 (165)
T pfam09445 3 IILDVFCGAGGNTIQFANVFC--SVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVFLSPP 80 (165)
T ss_pred EEEECCCCCCHHHHHHHHHCC--EEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 999937780799999997589--899997989999999998998398731799977599997887635887558997799
Q ss_pred HHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH---CCCCEEEE
Q ss_conf 332100122111112-35754332101123210256899999853788789998176679999999997---89805899
Q gi|254780875|r 174 YIESVIVDCLGLEVR-DFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFES---RKLFLVNA 249 (264)
Q Consensus 174 YI~~~~~~~l~~~v~-~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~---~gf~~v~~ 249 (264)
|=.++....-.-++. .-+|. ...++++.+. -+.++=.+++.=..+ .+++.++..+ .+. .+++
T Consensus 81 WGGp~Y~~~~~fdl~~~~~p~-----------~~~~l~~~~~-~it~ni~lfLPrn~d-~~ql~~~~~~l~g~~~-~~ev 146 (165)
T pfam09445 81 WGGPSYKRQNVYDLEKKLKPY-----------GLYQLLKEST-EISKNIILFLPRNSD-LNQLSSLTRELYGPRS-KCKV 146 (165)
T ss_pred CCCCCCCCCCCCCHHHCCCCC-----------CHHHHHHHHH-HHCCCEEEECCCCCC-HHHHHHHHHHHCCCCC-CEEE
T ss_conf 999885656766877726877-----------9999999998-636257998489899-8999998776238998-6699
Q ss_pred E-ECCCCCCE
Q ss_conf 8-05689975
Q gi|254780875|r 250 F-KDYGGNDR 258 (264)
Q Consensus 250 ~-kD~~g~~R 258 (264)
. .-++|+..
T Consensus 147 e~~~~ng~~k 156 (165)
T pfam09445 147 LYIKENGYMK 156 (165)
T ss_pred EEEECCCCEE
T ss_conf 9850178500
No 38
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.39 E-value=1.4e-13 Score=109.78 Aligned_cols=100 Identities=35% Similarity=0.473 Sum_probs=80.5
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHH
Q ss_conf 05664214211233122223332100133322200244420110001222222222222222---100233320113332
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNPPYIE 176 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~ 176 (264)
||||+|||+|..+..+++ .++.+++|+|+|+.+++.|+++....+. .++.+.++|+.+.. .++||+|+||+++-.
T Consensus 1 rVLDiGcG~G~~~~~l~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CEEEEECCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEECCCHHHCCHHHCCCEEEEEEECCEEC
T ss_conf 999998887999999995-6898899998988899999998753278-86467148867886320575319999175010
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 10012211111235754332101123210256899999853788789998
Q gi|254780875|r 177 SVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 177 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
. . +..+++++.+.++|+|||++++.
T Consensus 79 ~------~-------------------~~~~~~l~~~~~~LkpgG~~~is 103 (107)
T cd02440 79 L------V-------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred C------C-------------------CCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6------5-------------------18999999999874858199999
No 39
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.39 E-value=1e-12 Score=104.06 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=102.2
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 0462051223565553101233211012468605664214211233122223-332100133322200244420110001
Q gi|254780875|r 68 SSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGV 146 (264)
Q Consensus 68 ~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~ 146 (264)
..++-+-..|.-.++-.. +...+...++|+|||||.+++.+|+.. ++.+|+++|.++++++++++|++++++
T Consensus 18 ~~~~PmTK~EVRa~~l~~-------L~l~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~ 90 (198)
T PRK00377 18 AEGIPMTKEEIRALALSK-------LRLFKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGV 90 (198)
T ss_pred CCCCCCCHHHHHHHHHHH-------HCCCCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 999986679999999997-------0999989999917703299999999669787599996788899999999998099
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 22222222222222210023332011333210012211111235754332101123210256899999853788789998
Q gi|254780875|r 147 SERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 147 ~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
.+++++++++..+.+++ +++ +|.....||..| -+..|++.+.+.|+|+|.+++-
T Consensus 91 ~~nv~~i~G~ap~~l~~-------------------l~p-----~pD~vFIGG~~g--~l~~il~~~~~~L~~gGriVin 144 (198)
T PRK00377 91 GDNVVLIEGEAPEVLPK-------------------LNP-----KSDRYFIGGGGE--ELPEIIQAALEKIGKGGRIVAD 144 (198)
T ss_pred CCCEEEEECCHHHHHHC-------------------CCC-----CCCEEEEECCCC--CHHHHHHHHHHHCCCCCEEEEE
T ss_conf 98859995254887720-------------------899-----889899978877--7899999999857999899998
Q ss_pred E-CCCHHHHHHHHHHHCCCC
Q ss_conf 1-766799999999978980
Q gi|254780875|r 227 I-GYNQKVDVVRIFESRKLF 245 (264)
Q Consensus 227 i-g~~q~~~v~~ll~~~gf~ 245 (264)
. -..-.....+.+++.||.
T Consensus 145 aVtlet~~~~~~~l~~~~~~ 164 (198)
T PRK00377 145 AILLESLNKALSALEELGYK 164 (198)
T ss_pred EECHHHHHHHHHHHHHCCCC
T ss_conf 36298899999999976998
No 40
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.38 E-value=6.3e-13 Score=105.53 Aligned_cols=132 Identities=22% Similarity=0.277 Sum_probs=93.6
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHC
Q ss_conf 124686056642142112331222233321001333222002444201100012222222222222--221002333201
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS--SVEGLFDVIVSN 171 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~--~~~~~fD~IvsN 171 (264)
+-.+..+|||+|||.|.-+..||+++ +++|+|+|+|+.+++.|++.+.. .++++|..+|... +-++.||+|.|-
T Consensus 49 ~L~~~~kVLDvGCG~GG~a~~LA~~y-g~~V~GiDls~~~~~~A~er~~~---~~~v~f~~~d~~~~~f~d~sFDvV~S~ 124 (263)
T PTZ00098 49 ELDANSKVLDIGSGLGGGCKYINEKY-GAHTHGIDICEKIVNIAKERNQD---KAKIEFEAKDILKKDFPENNFDLIYSR 124 (263)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCC---CCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 88999868886888788999999974-98799985889999999985512---585489967853677886745589875
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE---C--C---CH------------
Q ss_conf 13332100122111112357543321011232102568999998537887899981---7--6---67------------
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI---G--Y---NQ------------ 231 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi---g--~---~q------------ 231 (264)
..+..++. .+=.++++...++|||||.+++.= + . .+
T Consensus 125 ------dailHip~------------------~DK~~l~~e~~RvLKPGG~llitDw~~~~~~~~s~~~~~yi~~r~~~l 180 (263)
T PTZ00098 125 ------DAILHLSL------------------ADKKKLFEKCYKWLKPNGILLITDYCADEIENWDDEFKAYIKKRKYTL 180 (263)
T ss_pred ------HHHHCCCH------------------HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCC
T ss_conf ------02230882------------------439999999999846887899975013578997398999998468766
Q ss_pred --HHHHHHHHHHCCCCEEEEEECCC
Q ss_conf --99999999978980589980568
Q gi|254780875|r 232 --KVDVVRIFESRKLFLVNAFKDYG 254 (264)
Q Consensus 232 --~~~v~~ll~~~gf~~v~~~kD~~ 254 (264)
.++-.+++++.||.+|+.. |.+
T Consensus 181 ~s~~~Y~~~l~~aGF~~v~~~-Drt 204 (263)
T PTZ00098 181 IPIEEYADIIKACKFKNVEAK-DIS 204 (263)
T ss_pred CCHHHHHHHHHHCCCCEEEEE-CCH
T ss_conf 799999999997799667875-142
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=99.35 E-value=6.2e-13 Score=105.56 Aligned_cols=104 Identities=27% Similarity=0.341 Sum_probs=83.9
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC----CCCCCCCCCCCCCCCCCC--CCCH--HH
Q ss_conf 246860566421421123312222333210013332220024442011----000122222222222222--2100--23
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAV----TNGVSERFDTLQSDWFSS--VEGL--FD 166 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~----~~~~~~~i~~~~~d~~~~--~~~~--fD 166 (264)
...+.+|||+|||||..+=.+.+.+|..++++.|+++.++..|++... ... -.++.|+++|.... .+++ ||
T Consensus 34 ~~~~~~vLd~GcGTG~~t~~l~~~~~~~~~~a~D~~~~ml~~a~~~~~~GWW~~~-~~~~~f~~gD~E~l~~~~~~~~~D 112 (272)
T TIGR02072 34 HFEPASVLDIGCGTGYLTRALLKRFPQAELIALDISEEMLAQAKEKLSEGWWQKN-LKAVQFICGDIEKLPLEDSSFKFD 112 (272)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 4455435651268548999999868800123333256789999974467886576-045666663777178876630341
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 33201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
+|+|| . +..| ++....++....+.|+|||.++|
T Consensus 113 LI~Sn------~--------a~QW------------~~~~~~~l~~l~~~lk~gG~l~F 145 (272)
T TIGR02072 113 LIVSN------L--------ALQW------------CDDLSQALSELARVLKPGGLLAF 145 (272)
T ss_pred HHHHH------H--------HHHH------------CCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 27563------5--------8871------------04788999999975287968998
No 42
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=3.4e-12 Score=100.71 Aligned_cols=106 Identities=25% Similarity=0.329 Sum_probs=85.8
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHCCH
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222--22100233320113
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS--SVEGLFDVIVSNPP 173 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~--~~~~~fD~IvsNPP 173 (264)
.++.+|||+|||||-+++.+++..+..+|+|+|+|+.+|++|++.+...+..+ ++|.++|..+ +-++.||++.+.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~-- 126 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTIS-- 126 (238)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCC-EEEEEECHHHCCCCCCCCCEEEEE--
T ss_conf 99987999668731999999996588449999799999999998743247663-279970565498888765889865--
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEEC
Q ss_conf 332100122111112357543321011232102568999998537887899-9817
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS-VEIG 228 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~-lEig 228 (264)
-..++. ..+.+.+++..+.|||||.+. +|+.
T Consensus 127 -----------fglrnv-------------~d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 127 -----------FGLRNV-------------TDIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred -----------EHHHCC-------------CCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf -----------123527-------------87899999998762687499998768
No 43
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=99.34 E-value=3.2e-13 Score=107.46 Aligned_cols=113 Identities=21% Similarity=0.351 Sum_probs=93.2
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 33211012468605664214211233122223332100133322200244420110001222222222222222100233
Q gi|254780875|r 88 FSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDV 167 (264)
Q Consensus 88 ~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~ 167 (264)
....+..-+++.+|||||||.|..++-+|+++ +++|+|+.+|++-.+.|++.++..|+++++++...|+.+ ++++||-
T Consensus 53 ~i~~~l~l~~g~~vLDiGCGWG~~a~~~a~~~-g~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd-~~~~fD~ 130 (273)
T pfam02353 53 LILDKLGLKPGMTLLDIGCGWGGLMRRAAERY-DVNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRD-FDEPFDR 130 (273)
T ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHH-CCCCCCE
T ss_conf 99986588999989997888089999999847-951899979789999999999870874321200062654-7666666
Q ss_pred HHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 32011333210012211111235754332101123210256899999853788789998
Q gi|254780875|r 168 IVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 168 IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
||| |. +..| =|...|..+++.+.++|+|||.+++.
T Consensus 131 IvS----ie----------m~Eh----------vg~~~~~~~f~~i~~~LkpgG~~~iq 165 (273)
T pfam02353 131 IVS----VG----------MFEH----------VGHENYDTFFKKLYNLLPPGGLMLLH 165 (273)
T ss_pred EEE----EH----------HHHH----------CCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 776----51----------6876----------28777999999999865889739999
No 44
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.33 E-value=3.3e-12 Score=100.80 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=114.5
Q ss_pred EEEEEEEEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 14423767750462051--2235655531012332110124686056642142112331222233321001333222002
Q gi|254780875|r 58 RDFYNVRLTLSSDTFEP--RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALE 135 (264)
Q Consensus 58 ~~F~~~~f~v~~~vLIP--RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~ 135 (264)
-.|.+.+|.+.|+.|.- ..-+|.|++.++++.. ..++-+|+|+.||+|.+++.+|+. ..+|+|+|+++.|++
T Consensus 196 e~~~~~~f~isp~sFfQvN~~~~~~L~~~~~~~~~----~~~~~~vlDlycG~G~~sl~lA~~--~~~V~gvE~~~~av~ 269 (375)
T PRK03522 196 ERFNDVPLFIRPQSFFQTNPAVAAQLYATARDWVR----ELPPKSMWDLFCGVGGFGLHCATP--DMQLTGIEISAEAIA 269 (375)
T ss_pred EEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCHHHHHHHHC--CCEEEEEEECHHHHH
T ss_conf 88888879975532146599999999999999863----158978999657853888987641--788999984599999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 44420110001222222222222222---100233320113332100122111112357543321011232102568999
Q gi|254780875|r 136 IAKSNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADG 212 (264)
Q Consensus 136 ~A~~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~ 212 (264)
.|++|++.||+++ ++|..+|..+.. .+++|+||-+||- .|+. ..+++.
T Consensus 270 ~A~~na~~ngi~n-v~f~~~d~~~~~~~~~~~~d~vvvDPPR--------------------------~Gl~--~~~~~~ 320 (375)
T PRK03522 270 CAKQSAAELGLTN-VQFQALDSTQFATAQGEVPELVLVNPPR--------------------------RGIG--KPLCDY 320 (375)
T ss_pred HHHHHHHHCCCCC-EEEEECCHHHHHHHCCCCCCEEEECCCC--------------------------CCCH--HHHHHH
T ss_conf 9999999869987-6999737788876345689789989997--------------------------7751--999999
Q ss_pred HHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCC
Q ss_conf 99853788789998176-679999999997898058998-0568
Q gi|254780875|r 213 VSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYG 254 (264)
Q Consensus 213 ~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~ 254 (264)
.. -++|.-.+++--++ .++.++..+ .||...++. =|++
T Consensus 321 l~-~~~p~~IvYVSCnP~TlaRDl~~L---~gy~l~~v~~~DmF 360 (375)
T PRK03522 321 LS-QMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMF 360 (375)
T ss_pred HH-HCCCCEEEEEECCHHHHHHHHHHH---CCCEEEEEEEECCC
T ss_conf 98-659996999907989999998884---39768899995369
No 45
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.33 E-value=4.2e-13 Score=106.65 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=114.8
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 44237677504620512235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 59 DFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 59 ~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
.|.|..+.+.++--+ ||-|.-+=|.+..++.. .-...+|||++||||++++-.+++ ....|+.+|.+..++...+
T Consensus 18 ~~kGr~L~~p~~~~~-RPT~drvREalFn~L~~---~i~~~~vLDLFAGSGalGlEALSR-GA~~v~fVE~~~~~~~~i~ 92 (198)
T PRK10909 18 QWRGRKLPVPDSPGL-RPTTDRVRETLFNWLAP---VIVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVSQQLI 92 (198)
T ss_pred CCCCCEECCCCCCCC-CCCCHHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHH
T ss_conf 568978368999996-87838899999987576---429987998277746889999987-9978999978999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--H
Q ss_conf 20110001222222222222222---100233320113332100122111112357543321011232102568999--9
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADG--V 213 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~--~ 213 (264)
+|+...+.+ +++++++|.+..+ ..+||+|+.-|||= .. .+..++.. .
T Consensus 93 ~N~~~l~~~-~~~ii~~da~~~L~~~~~~fDlIF~DPPY~-~~--------------------------~~~~~l~~l~~ 144 (198)
T PRK10909 93 KNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPFR-KG--------------------------LLEETINLLEQ 144 (198)
T ss_pred HHHHHHCCC-CEEEEEHHHHHHHHCCCCCEEEEEECCCCC-CC--------------------------HHHHHHHHHHH
T ss_conf 999984888-679995569998625599521899899976-55--------------------------59999999998
Q ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 985378878999817667999999999789805899805689975999979
Q gi|254780875|r 214 SRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 214 ~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
..+|+++|++++|+....... + .-.+|..++..+ .|...+.+.+|
T Consensus 145 ~~~L~~~gliiiE~~~~~~l~--~--~~~~~~l~kek~--yG~t~~~lY~~ 189 (198)
T PRK10909 145 NGWLADDALIYVESEVENGLP--T--VPANWSLHREKV--AGQVAYRLYQR 189 (198)
T ss_pred CCCCCCCCEEEEEECCCCCCC--C--CCCCEEEEEECC--CCCEEEEEEEE
T ss_conf 889189969999954888877--7--898859999703--08699999998
No 46
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.33 E-value=5.3e-13 Score=105.99 Aligned_cols=100 Identities=27% Similarity=0.368 Sum_probs=81.6
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHCCH
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222221--00233320113
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSNPP 173 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsNPP 173 (264)
....+|||+|||-|.++.++|+. +++|+|+|+|++++++|+..+..+++. ++..+....+-.. ++||+|+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cm-- 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCM-- 131 (243)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHCCCCCCEEEEH--
T ss_conf 77770887458832864999977--994697438767789998754424632--252233299997248974489773--
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 3321001221111123575433210112321025689999985378878999
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
||..|=| ..+.++..+.+.+||+|.+++
T Consensus 132 ------------EVlEHv~------------dp~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 132 ------------EVLEHVP------------DPESFLRACAKLVKPGGILFL 159 (243)
T ss_pred ------------HHHHCCC------------CHHHHHHHHHHHCCCCCEEEE
T ss_conf ------------5877169------------999999999986299928999
No 47
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=99.31 E-value=7e-12 Score=98.62 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC-------CCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 05122356555310123321101246860566421421123312222-------33321001333222002444201100
Q gi|254780875|r 72 FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKE-------SPFFKGVGVDISCKALEIAKSNAVTN 144 (264)
Q Consensus 72 LIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~-------~~~~~v~~~Dis~~al~~A~~N~~~~ 144 (264)
+-||+=++++|+.+ ...+..+|+|-+||||...+..... ..+.+++|.|+++.+..+|+-|+..|
T Consensus 29 fTPr~Vv~lmv~ll--------~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lh 100 (312)
T pfam02384 29 YTPREVSKLIVELL--------EPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILH 100 (312)
T ss_pred CCCHHHHHHHHHHH--------CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 88789999999982--------8999998821687733789999999998437855655636889989999999999984
Q ss_pred CCC-CCCCCCCCCCCCCC----CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCC
Q ss_conf 012-22222222222222----100233320113332100122111112357543321011-232102568999998537
Q gi|254780875|r 145 GVS-ERFDTLQSDWFSSV----EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGI-DGLSHYRTIADGVSRHLN 218 (264)
Q Consensus 145 ~~~-~~i~~~~~d~~~~~----~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~-dGl~~~~~ii~~~~~~L~ 218 (264)
|++ ....+.++|.+... .++||+|+|||||=...... ... ...|+-.-.+-. ..-.. -.++..+...|+
T Consensus 101 gi~~~~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~---~~~-~~~~~~~~~~~~~~~~~e-~~Fiqh~l~~Lk 175 (312)
T pfam02384 101 GIEYNDFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDAN---DNL-ENDPRFRAYGVPPKSNAD-FAFLQHIIYHLS 175 (312)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC---CCC-CCCCCHHCCCCCCCCCHH-HHHHHHHHHHCC
T ss_conf 798874552147765576766545511898378646676654---321-027211036878887442-999999998569
Q ss_pred CCCEEEEEECC------CHHHHHHHHHHHCCC
Q ss_conf 88789998176------679999999997898
Q gi|254780875|r 219 KDGLCSVEIGY------NQKVDVVRIFESRKL 244 (264)
Q Consensus 219 ~~G~l~lEig~------~q~~~v~~ll~~~gf 244 (264)
++|.+.+-+.. +...++++.+-+.++
T Consensus 176 ~~GraaiVlp~g~Lf~~~~e~~iR~~lle~~~ 207 (312)
T pfam02384 176 PNGRAAVVLPNGVLFRGGAEGDIRKALVEKDL 207 (312)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99769999558231046508899999997597
No 48
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=99.30 E-value=1e-11 Score=97.58 Aligned_cols=158 Identities=23% Similarity=0.317 Sum_probs=111.9
Q ss_pred EEEEEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 23767750462051--2235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 61 YNVRLTLSSDTFEP--RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 61 ~~~~f~v~~~vLIP--RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
++.+|.+.|+.|-= +.-+|.|++.++++. .....-+|+|+-||+|.+++.||+.. .+|+|+|.++.|++-|+
T Consensus 260 ~~~~~~~sp~sFfQvN~~~ae~L~~~a~~~l----~~~~~~~VlDLYcGvGtfsl~LA~~~--~~V~gvE~~~~av~~A~ 333 (440)
T PRK13168 260 FGLRLAFSPTDFIQVNAQVNQKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVPAMVERAR 333 (440)
T ss_pred CCEEEEECCCCEEEECHHHHHHHHHHHHHHH----CCCCCCEEEEEECCCCCCCHHHHHCC--CEEEEEECCHHHHHHHH
T ss_conf 7558767899878659999999999999985----26789889986238562111135306--76887605799999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCC------CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 20110001222222222222222------100233320113332100122111112357543321011232102568999
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSSV------EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADG 212 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~~------~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~ 212 (264)
+|++.|++++ ++|+++|+.+.+ .++||+||-+||= .|+ ...++.
T Consensus 334 ~Na~~n~i~n-~~f~~~d~~~~l~~~~~~~~~~D~vi~DPPR--------------------------~G~---~~~i~~ 383 (440)
T PRK13168 334 ENARRNGLDN-VTFYHANLFEDFTDQPWAKGGFDKVLLDPPR--------------------------AGA---FEVMQA 383 (440)
T ss_pred HHHHHCCCCC-CEEEECCHHHHHHHHHHHCCCCCEEEECCCC--------------------------CCH---HHHHHH
T ss_conf 9999749998-7899746456635578637999989999885--------------------------278---999999
Q ss_pred HHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCCCC
Q ss_conf 99853788789998176-679999999997898058998-056899
Q gi|254780875|r 213 VSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYGGN 256 (264)
Q Consensus 213 ~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~g~ 256 (264)
.. -++|.-.+++--++ .++.++ +.|.+.||...++. =|++=.
T Consensus 384 l~-~~~p~~IvYVSCnPaTlARDl-~~L~~~GY~l~~i~~vDmFP~ 427 (440)
T PRK13168 384 LA-KLKPKRIVYVSCNPATLARDA-GVLVEAGYRLKRAGVLDMFPH 427 (440)
T ss_pred HH-HCCCCEEEEECCCHHHHHHHH-HHHHHCCCEEEEEEEEECCCC
T ss_conf 98-479897999938989999999-999878948959999606999
No 49
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=2e-12 Score=102.23 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=104.1
Q ss_pred HCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53631442376775046205122356555310123321101246860566421421123312222333210013332220
Q gi|254780875|r 54 ILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKA 133 (264)
Q Consensus 54 Ilg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~a 133 (264)
.++....|+..|+-++.. +-|.+.. ..++.....+.-+++.++||+|||.|.+++-.|+++ +++|+|+++|+..
T Consensus 34 ~Ld~~~~Yscayf~~~~~---tL~eAQ~--~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q 107 (283)
T COG2230 34 FLDPSMTYSCAYFEDPDM---TLEEAQR--AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQ 107 (283)
T ss_pred HCCCCCCEEEEEECCCCC---CHHHHHH--HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC-CCEEEEEECCHHH
T ss_conf 628987624577579988---8589999--999999975699999989874788449999999984-9979996689999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 02444201100012222222222222221002333201133321001221111123575433210112321025689999
Q gi|254780875|r 134 LEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV 213 (264)
Q Consensus 134 l~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~ 213 (264)
.+.|++-+..-|+++++++...|+.+ +.++||-||| | +..+.+ |.+-|..+++.+
T Consensus 108 ~~~~~~r~~~~gl~~~v~v~l~d~rd-~~e~fDrIvS----v--gmfEhv------------------g~~~~~~ff~~~ 162 (283)
T COG2230 108 LAYAEKRIAARGLEDNVEVRLQDYRD-FEEPFDRIVS----V--GMFEHV------------------GKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCC-CCCCCCEEEE----H--HHHHHH------------------CCCCHHHHHHHH
T ss_conf 99999999975997660799656210-3243420556----0--068873------------------710289999999
Q ss_pred HHHCCCCCEEEE
Q ss_conf 985378878999
Q gi|254780875|r 214 SRHLNKDGLCSV 225 (264)
Q Consensus 214 ~~~L~~~G~l~l 225 (264)
.++|+|+|.+++
T Consensus 163 ~~~L~~~G~~ll 174 (283)
T COG2230 163 YALLKPGGRMLL 174 (283)
T ss_pred HHHCCCCCEEEE
T ss_conf 964599965999
No 50
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=99.27 E-value=8.4e-13 Score=104.70 Aligned_cols=89 Identities=25% Similarity=0.255 Sum_probs=75.3
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC-CCCCCCCC
Q ss_conf 65553101233211012468605664214211233122223332100133322200244420110001222-22222222
Q gi|254780875|r 79 ELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSER-FDTLQSDW 157 (264)
Q Consensus 79 E~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~-i~~~~~d~ 157 (264)
+.+.+..+.++.+ -...++.+|||-|||+|.+++.||++ +++|.|+|||+..++.|++.++.....+| ++|..+|+
T Consensus 37 ~~~~~~~l~wL~~-d~~l~G~~vlDAGCGtGllsi~LAk~--GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl 113 (224)
T TIGR02021 37 AAMREKLLEWLPK-DRSLKGKKVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDL 113 (224)
T ss_pred HHHHHHHHHHCCC-CCCCCCCEEEECCCCCCHHHHHHHHC--CCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCH
T ss_conf 9999999985467-88987677775588931544988847--98686623768999999862100210167003545304
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 2222100233320
Q gi|254780875|r 158 FSSVEGLFDVIVS 170 (264)
Q Consensus 158 ~~~~~~~fD~Ivs 170 (264)
.+..-|+||.|||
T Consensus 114 ~s~~~G~fD~VV~ 126 (224)
T TIGR02021 114 ESLELGKFDAVVA 126 (224)
T ss_pred HHHCCCCCCEEEE
T ss_conf 4413898555675
No 51
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=99.24 E-value=1.1e-11 Score=97.24 Aligned_cols=170 Identities=15% Similarity=0.181 Sum_probs=120.4
Q ss_pred CCHHHHCCCEEEEEEEEEEECC--CCCHHHHHHHHHHHHC-----------CCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 8376853631442376775046--2051223565553101-----------23321101246860566421421123312
Q gi|254780875|r 49 ESIHRILGWRDFYNVRLTLSSD--TFEPRPETELLVDSAL-----------AFSLPRIEKRDVVRILDLGTGTGAVCLAL 115 (264)
Q Consensus 49 ~Pl~YIlg~~~F~~~~f~v~~~--vLIPRpeTE~lv~~~l-----------~~~~~~~~~~~~~~vLDlG~GsG~i~i~l 115 (264)
.+..-|+|.. ||-.+..+.+ +++-||--|+++...- .++....+-.++.+|+|-|||||+++++|
T Consensus 43 ~~H~diIGk~--~Gs~v~ss~g~~~~vl~Pt~e~~t~~mprrtQIiYpkD~s~I~~~ldi~PG~~VlEaGtGSGsLT~~L 120 (309)
T pfam08704 43 LRHSDIIGKR--YGSKVSSSKGGFVYVLQPTPELWTLALPHRTQILYTPDISLIIMMLELKPGSVVCESGTGSGSLSHAI 120 (309)
T ss_pred EEHHHHCCCC--CCCEEEECCCCEEEEECCCHHHHHHCCCCCCCEECCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHH
T ss_conf 7789923899--97589938995799978999999844888773255600999999809899999998367842999999
Q ss_pred CCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC-C----CCCHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf 2223-3321001333222002444201100012222222222222-2----21002333201133321001221111123
Q gi|254780875|r 116 LKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS-S----VEGLFDVIVSNPPYIESVIVDCLGLEVRD 189 (264)
Q Consensus 116 a~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~-~----~~~~fD~IvsNPPYI~~~~~~~l~~~v~~ 189 (264)
|+.. |.-+++..|+.++..+.|++|.+.+++.+++.+.+.|+.. . ..+.+|.|+-.-|
T Consensus 121 aravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~~~~~D~VfLDlp---------------- 184 (309)
T pfam08704 121 ARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKADAVFLDLP---------------- 184 (309)
T ss_pred HHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCCCCCEEEECCC----------------
T ss_conf 9974888659998447899999999998749875058898520013666445664358997589----------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEE-EECCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 57543321011232102568999998537-8878999-81766799999999978980589980
Q gi|254780875|r 190 FDPRISLDGGIDGLSHYRTIADGVSRHLN-KDGLCSV-EIGYNQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 190 ~EP~~AL~gg~dGl~~~~~ii~~~~~~L~-~~G~l~l-Eig~~q~~~v~~ll~~~gf~~v~~~k 251 (264)
+|.. .+..+.+.|+ +||.+.. ----.|.+++.+.|++.||..++++.
T Consensus 185 -~PW~--------------ai~~~~~~Lk~~Gg~l~~f~P~ieQv~r~~~aL~~~gF~~i~t~E 233 (309)
T pfam08704 185 -APWE--------------AIPHAAKALKVEGGRLCSFSPCIEQVQRTCLALAALGFTEIETIE 233 (309)
T ss_pred -CHHH--------------HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf -9799--------------889999860689968999919899999999999977997407999
No 52
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.24 E-value=1.1e-11 Score=97.24 Aligned_cols=175 Identities=20% Similarity=0.164 Sum_probs=113.0
Q ss_pred HHHHCCC-E------EEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-
Q ss_conf 7685363-1------4423767750462051223565553101233211012468605664214211233122223332-
Q gi|254780875|r 51 IHRILGW-R------DFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFF- 122 (264)
Q Consensus 51 l~YIlg~-~------~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~- 122 (264)
-+|+.|+ . .=.|.+|.|+.. ==..|=+..|+-..-..- ...-+..+|||++|=||.-++..|.. +|
T Consensus 168 ~~~~~g~~~~~~~~i~E~g~kf~v~~~---~g~kTGfFlDqR~~R~~l-~~~~~GkrvLNlFsYTGgfsv~Aa~g--GA~ 241 (393)
T COG1092 168 SQYLKGEEAPEEVVIEENGVKFLVDLV---DGLKTGFFLDQRDNRRAL-GELAAGKRVLNLFSYTGGFSVHAALG--GAS 241 (393)
T ss_pred CCCCCCCCCCCCEEEEECCEEEEEECC---CCCCCEEEHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHC--CCC
T ss_conf 343225668874799807806998658---742004528767999998-61316876788646676999999866--997
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCCCCCCCCC------CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 1001333222002444201100012-222222222222221------002333201133321001221111123575433
Q gi|254780875|r 123 KGVGVDISCKALEIAKSNAVTNGVS-ERFDTLQSDWFSSVE------GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRIS 195 (264)
Q Consensus 123 ~v~~~Dis~~al~~A~~N~~~~~~~-~~i~~~~~d~~~~~~------~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~A 195 (264)
+|+++|+|..|+++|++|++.||++ +++.|+++|.|+.+. .+||+||..||=...+.... .
T Consensus 242 ~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~--~---------- 309 (393)
T COG1092 242 EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQE--F---------- 309 (393)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC--H----------
T ss_conf 1489826578999999999862997101056722399999999855995568997881003582100--5----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC-----CH-HHHHHHHHHHCCCCEEE
Q ss_conf 2101123210256899999853788789998176-----67-99999999978980589
Q gi|254780875|r 196 LDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY-----NQ-KVDVVRIFESRKLFLVN 248 (264)
Q Consensus 196 L~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~-----~q-~~~v~~ll~~~gf~~v~ 248 (264)
++...|..++..+.++|+|+|.+++-... ++ .+.+.+-+...+.....
T Consensus 310 -----~~~rdy~~l~~~~~~lL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 310 -----SAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred -----HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf -----389899999999999707996899993677669899999999999864875799
No 53
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=99.24 E-value=4.4e-12 Score=99.93 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=114.3
Q ss_pred HHHCCCCHHHHCCCEEE------EEEEEEEECC------C-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 89749837685363144------2376775046------2-051223565553101233211012468605664214211
Q gi|254780875|r 44 RSLKHESIHRILGWRDF------YNVRLTLSSD------T-FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGA 110 (264)
Q Consensus 44 rr~~g~Pl~YIlg~~~F------~~~~f~v~~~------v-LIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~ 110 (264)
|...|.|-+++.|+.+= .|.+|.|+.. - |.=|+ +-.++.. ..++.+|||+.|=||.
T Consensus 68 R~~~g~~~~~l~Ge~p~~~~v~E~g~~f~v~~~~gqktG~flDqR~-nR~~~~~----------~~~g~rvLn~Fsytg~ 136 (286)
T pfam10672 68 RYADGAPSEVLLGELLETPVVVENGLKYQLDIGRNQNFGLFLDMRL-GRRWVQE----------NAKGKNVLNLFAYTCG 136 (286)
T ss_pred HHCCCCCCCEEECCCCCCCEEEECCEEEEEECCCCCCCEEEHHHHH-HHHHHHH----------HCCCCCEEEECCCCCH
T ss_conf 2115986615763799963798899799986245866678342388-8999998----------7289832531147869
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCCCCCCCC-----CCHHHHHHHCCHHHHHHCCCCCC
Q ss_conf 2331222233321001333222002444201100012-22222222222222-----10023332011333210012211
Q gi|254780875|r 111 VCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVS-ERFDTLQSDWFSSV-----EGLFDVIVSNPPYIESVIVDCLG 184 (264)
Q Consensus 111 i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~-~~i~~~~~d~~~~~-----~~~fD~IvsNPPYI~~~~~~~l~ 184 (264)
.++..+. -....|+++|.|+.|++.|++|+..|+++ .++++..+|.|+.+ .++||+||..||=...+.
T Consensus 137 fsv~A~~-~GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~l~~~~~~~~fD~VilDPPsf~k~~----- 210 (286)
T pfam10672 137 FSVAAIA-GGASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKSWGKIKKLGPYDLVIIDPPSFQKGS----- 210 (286)
T ss_pred HHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCCCCH-----
T ss_conf 9999876-7987799991988999999999997699954369998309999999861799987998799988872-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC--HHHHHHHHHHHCC
Q ss_conf 1112357543321011232102568999998537887899981766--7999999999789
Q gi|254780875|r 185 LEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN--QKVDVVRIFESRK 243 (264)
Q Consensus 185 ~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~--q~~~v~~ll~~~g 243 (264)
..+ ...|++++..+.++|+|||+++..-... -.+.+.+.+.+.+
T Consensus 211 ~~~---------------~~~Y~~l~~~a~~ll~~gG~L~~~s~s~~l~~~~~~~~~~~~~ 256 (286)
T pfam10672 211 FAL---------------TKDYKKILRRLPELLVEGGTVLACVNSPAVGPDFLIEEMAEEA 256 (286)
T ss_pred HHH---------------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 478---------------8789999999998608996899981886589999999999858
No 54
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=99.24 E-value=7.9e-12 Score=98.28 Aligned_cols=166 Identities=22% Similarity=0.270 Sum_probs=108.7
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 44237677504620512235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 59 DFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 59 ~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
.|.|+++.+.++ ..-||-|.-.=|.+-..+.... .-.+.+|||+.||||++++...+ +...+|+.+|.+..|+++.+
T Consensus 7 ~~kgr~l~~p~~-~~~RPT~~rvrEalFniL~~~~-~i~~~~~LDLFaGSGslglEAlS-RGA~~v~fvE~~~~a~~~i~ 83 (181)
T pfam03602 7 KYKGRKLKVPPG-PGTRPTTDRVREALFNILAPYF-ELGGARVLDLFAGSGALGLEALS-RGASSVVFVEKDKKAVATLK 83 (181)
T ss_pred CCCCCEECCCCC-CCCCCCCHHHHHHHHHHHCCCC-CCCCCEEEECCCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHH
T ss_conf 478988257999-9957684889999997501345-54898799827872698999997-69988999969999999999
Q ss_pred HCCCCCCCCCCCCCCCCCC---CC--CCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 2011000122222222222---22--221002333201133321001221111123575433210112321025689999
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDW---FS--SVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV 213 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~---~~--~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~ 213 (264)
+|++..+..+++ +...+. .. ....+||+|+..|||= .. .+..++...
T Consensus 84 ~N~~~l~~~~~~-~~~~~~~~~~~~~~~~~~fdiIF~DPPY~-~~--------------------------~~~~~l~~l 135 (181)
T pfam03602 84 ENLEALGLEGAV-LRMDAARALLRLAGKGPPFDLVFLDPPYA-KG--------------------------LIEEALELL 135 (181)
T ss_pred HHHHHHCCCCEE-EECCHHHHHHHHCCCCCCCCEEECCCCCC-CH--------------------------HHHHHHHHH
T ss_conf 999985899779-98108999987533578887663599754-20--------------------------699999999
Q ss_pred --HHHCCCCCEEEEEECCCHHHHHHHHHH-HCCCCEEEEEECCCCCCEEEEE
Q ss_conf --985378878999817667999999999-7898058998056899759999
Q gi|254780875|r 214 --SRHLNKDGLCSVEIGYNQKVDVVRIFE-SRKLFLVNAFKDYGGNDRVLLF 262 (264)
Q Consensus 214 --~~~L~~~G~l~lEig~~q~~~v~~ll~-~~gf~~v~~~kD~~g~~R~vi~ 262 (264)
.++|+++|++++|+..... +.. -.+|..+...+ .|...+..+
T Consensus 136 ~~~~~l~~~~iiiiE~~~~~~-----~~~~~~~~~~~k~k~--YG~t~i~f~ 180 (181)
T pfam03602 136 AEKGWLNPNALIVVETESDEE-----LPEQPANLELVREKK--YGQTKLAFY 180 (181)
T ss_pred HHCCCCCCCEEEEEEECCCCC-----CCCCCCCEEEEEEEE--CCCEEEEEE
T ss_conf 966665798099999668778-----666898708999994--498999996
No 55
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=7.9e-12 Score=98.29 Aligned_cols=128 Identities=23% Similarity=0.280 Sum_probs=103.9
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHH
Q ss_conf 10124686056642142112331222-23332100133322200244420110001222222222222222-10023332
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAVCLALLK-ESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-EGLFDVIV 169 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i~i~la~-~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-~~~fD~Iv 169 (264)
...-.+..+|+|.|||||.++.+||. ..|..+|+..|+.++.++.|++|...+++.+++.+..+|..+.. ++.||.|+
T Consensus 89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~ 168 (256)
T COG2519 89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF 168 (256)
T ss_pred HCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEE
T ss_conf 70999887899815680599999999648884599999527899999999998424561378705400024655467799
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHHHHCCCCEEE
Q ss_conf 01133321001221111123575433210112321025689999985378878999817-66799999999978980589
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG-YNQKVDVVRIFESRKLFLVN 248 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig-~~q~~~v~~ll~~~gf~~v~ 248 (264)
-.-| +|. ..++.+.+.|+|||.+.+=.. .+|.+++.+.+++.||..++
T Consensus 169 LDmp-----------------~PW--------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 169 LDLP-----------------DPW--------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred ECCC-----------------CHH--------------HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 7589-----------------848--------------999999987179967999839789999999999866951502
Q ss_pred EE
Q ss_conf 98
Q gi|254780875|r 249 AF 250 (264)
Q Consensus 249 ~~ 250 (264)
.+
T Consensus 218 ~~ 219 (256)
T COG2519 218 AV 219 (256)
T ss_pred HH
T ss_conf 32
No 56
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.23 E-value=3.9e-11 Score=93.74 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=104.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 67750462051223565553101233211012468605664214211233122223332100133322200244420110
Q gi|254780875|r 64 RLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVT 143 (264)
Q Consensus 64 ~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~ 143 (264)
.|..++++=+--+|--.++-. ++...+...++|+|||||.|++..+...|..+++|+|.++++++..++|+.+
T Consensus 8 ~F~~~~~~p~TK~EIRal~ls-------~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~ 80 (187)
T COG2242 8 LFERDEGGPMTKEEIRALTLS-------KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAAR 80 (187)
T ss_pred HHCCCCCCCCCHHHHHHHHHH-------HHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 532478999867998998898-------6088999989995788668999999739885599992588899999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 00122222222222222210023332011333210012211111235754332101123210256899999853788789
Q gi|254780875|r 144 NGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLC 223 (264)
Q Consensus 144 ~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l 223 (264)
+++ +|+.+..++..+.+++ + . +|..+..||.- -+..+++.+...|+++|.+
T Consensus 81 fg~-~n~~vv~g~Ap~~L~~-------------------~-----~-~~daiFIGGg~---~i~~ile~~~~~l~~ggrl 131 (187)
T COG2242 81 FGV-DNLEVVEGDAPEALPD-------------------L-----P-SPDAIFIGGGG---NIEEILEAAWERLKPGGRL 131 (187)
T ss_pred HCC-CCEEEEECCCHHHHCC-------------------C-----C-CCCEEEECCCC---CHHHHHHHHHHHCCCCCEE
T ss_conf 499-9679995464576369-------------------9-----9-99999987987---7789999999971868769
Q ss_pred EEEECC-CHHHHHHHHHHHCCCC
Q ss_conf 998176-6799999999978980
Q gi|254780875|r 224 SVEIGY-NQKVDVVRIFESRKLF 245 (264)
Q Consensus 224 ~lEig~-~q~~~v~~ll~~~gf~ 245 (264)
+.-.-. .-.....+.+++.|+.
T Consensus 132 V~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 132 VANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred EEEEECHHHHHHHHHHHHHCCCC
T ss_conf 99860088899999999972985
No 57
>KOG1270 consensus
Probab=99.22 E-value=4.9e-12 Score=99.64 Aligned_cols=99 Identities=25% Similarity=0.349 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC-----CCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 860566421421123312222333210013332220024442011000122-----222222222222210023332011
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSE-----RFDTLQSDWFSSVEGLFDVIVSNP 172 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~-----~i~~~~~d~~~~~~~~fD~IvsNP 172 (264)
..+|||+|||.|.++..||+. +++|+|+|++++++++|++.+...-..+ |+++.+.+. +...++||.|||-
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~-E~~~~~fDaVvcs- 165 (282)
T KOG1270 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV-EGLTGKFDAVVCS- 165 (282)
T ss_pred CCEEEEECCCCCCCCHHHHHH--CCEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCH-HHCCCCCCEEEEH-
T ss_conf 864787236755023235750--885685265599999998751049033056414630201533-2145656454419-
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 33321001221111123575433210112321025689999985378878999
Q gi|254780875|r 173 PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 173 PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
||..|= .....++....++|+|||.+++
T Consensus 166 -------------evleHV------------~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270 166 -------------EVLEHV------------KDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred -------------HHHHHH------------HCHHHHHHHHHHHHCCCCCEEE
T ss_conf -------------899987------------4789999999998488982586
No 58
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2e-11 Score=95.60 Aligned_cols=125 Identities=23% Similarity=0.248 Sum_probs=87.6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHH
Q ss_conf 24686056642142112331222233321001333222002444201100012222222222222221002333201133
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPY 174 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPY 174 (264)
.-....|+|+|||||.+++..+..- ..+|+|+|++++|+++++.|+.+ +..+++|..+|. ..+.++||.++.|||+
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv-~~~~~~~dtvimNPPF 118 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADV-SDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH--HCCCEEEEECCH-HHCCCCCCEEEECCCC
T ss_conf 8478888882788478899998629-71799993698999999988886--088469998210-1147766669978997
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3210012211111235754332101123210256899999853788789998176679999999997898058998
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~ 250 (264)
=.. ++| + | +.++..+.+.- -+++--|.....+-+.+.....|+.....+
T Consensus 119 G~~----------~rh-a--------D-----r~Fl~~Ale~s---~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 119 GSQ----------RRH-A--------D-----RPFLLKALEIS---DVVYSIHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred CCC----------CCC-C--------C-----HHHHHHHHHHH---HEEEEEECCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 322----------136-8--------8-----89999999740---147874016607999999885497089999
No 59
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.21 E-value=1.1e-11 Score=97.23 Aligned_cols=111 Identities=19% Similarity=0.201 Sum_probs=76.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHCCH
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222--22100233320113
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS--SVEGLFDVIVSNPP 173 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~--~~~~~fD~IvsNPP 173 (264)
.+..+|||+|||||.++..++.. .++++++|+|+.+++.|+++... ..+.++|... ..++.||+|+||-
T Consensus 41 ~~~~~vLDlGcGtG~~t~~l~~~--~~~v~~~Dls~~Ml~~a~~~~~~------~~~~~~D~e~Lp~~~~sfDli~S~~- 111 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAA------DHYLAGDIESLPLATATFDLAWSNL- 111 (251)
T ss_pred CCCCCEEEEEEHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHCCC------HHHHHCHHHHCCCCCCCCCEEEECC-
T ss_conf 78993999831002789999974--99699995989999999874863------3435360630999878821785504-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCHHHHHHHHHH
Q ss_conf 33210012211111235754332101123210256899999853788789998-17667999999999
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE-IGYNQKVDVVRIFE 240 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE-ig~~q~~~v~~ll~ 240 (264)
-+ .|= ......+.++.+.|+|||+++|- .|.+...++.+.+.
T Consensus 112 -----~l--------qW~------------~d~~~~l~e~~rvLkPgG~l~fst~g~~tl~ELr~a~~ 154 (251)
T PRK10258 112 -----AV--------QWC------------GNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ 154 (251)
T ss_pred -----CH--------HHC------------CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf -----04--------525------------99999999999645899499998157576899999999
No 60
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=99.19 E-value=2.8e-12 Score=101.21 Aligned_cols=96 Identities=32% Similarity=0.423 Sum_probs=71.7
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHCCHHHHHHC
Q ss_conf 664214211233122223332100133322200244420110001222222--222222222100233320113332100
Q gi|254780875|r 102 LDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDT--LQSDWFSSVEGLFDVIVSNPPYIESVI 179 (264)
Q Consensus 102 LDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~--~~~d~~~~~~~~fD~IvsNPPYI~~~~ 179 (264)
||+|||+|..+..+++.+|+++++|+|+|+.+++.|+++....+..+...+ ...+.....+++||+|+|+ ..
T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~------~v 74 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVAS------NV 74 (98)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEEC------CC
T ss_conf 988633799999999878998899985988999999999987134531110000000222035898899610------41
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 12211111235754332101123210256899999853788789
Q gi|254780875|r 180 VDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLC 223 (264)
Q Consensus 180 ~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l 223 (264)
++.+ ...+.+++.+.++|||||++
T Consensus 75 l~~~--------------------~~~~~~l~~~~r~LkpgG~l 98 (98)
T pfam08242 75 LHHL--------------------ADPRAVLRNLRRLLKPGGVL 98 (98)
T ss_pred HHHC--------------------CCHHHHHHHHHHHCCCCCCC
T ss_conf 7725--------------------89999999999974999899
No 61
>KOG1271 consensus
Probab=99.16 E-value=6e-11 Score=92.51 Aligned_cols=164 Identities=29% Similarity=0.353 Sum_probs=108.8
Q ss_pred HCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53631442376775046205122356555310123321101246860566421421123312222333210013332220
Q gi|254780875|r 54 ILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKA 133 (264)
Q Consensus 54 Ilg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~a 133 (264)
=.|+.||-.- --|-+|+|.+......--.++..+|||||||.|.+..-|+++--....+|+|.|++|
T Consensus 37 d~GEvWFg~~-------------ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~A 103 (227)
T KOG1271 37 DEGEVWFGED-------------AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKA 103 (227)
T ss_pred CCCCEECCCC-------------HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 7633560773-------------899999999865444110224321166157961889998871388886453157889
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCC-CCCHHHH
Q ss_conf 024442011000122222222222222--21002333201133321001221111123575433210-1123-2102568
Q gi|254780875|r 134 LEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDG-GIDG-LSHYRTI 209 (264)
Q Consensus 134 l~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~g-g~dG-l~~~~~i 209 (264)
+++|+.-|++.+.++.|+|.+.|++.+ ..++||+|.- ..-+.. +.|.| +.+| +..|
T Consensus 104 V~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD------KGT~DA-----------isLs~d~~~~r~~~Y--- 163 (227)
T KOG1271 104 VELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD------KGTLDA-----------ISLSPDGPVGRLVVY--- 163 (227)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEE------CCCEEE-----------EECCCCCCCCCEEEE---
T ss_conf 999987887527885316887322577555543238960------574122-----------550777766543443---
Q ss_pred HHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999985378878999-81766799999999978980589980
Q gi|254780875|r 210 ADGVSRHLNKDGLCSV-EIGYNQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 210 i~~~~~~L~~~G~l~l-Eig~~q~~~v~~ll~~~gf~~v~~~k 251 (264)
+....+.|+|+|.+++ -..+.+ +++.+.+...||......+
T Consensus 164 ~d~v~~ll~~~gifvItSCN~T~-dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271 164 LDSVEKLLSPGGIFVITSCNFTK-DELVEEFENFNFEYLSTVP 205 (227)
T ss_pred HHHHHHCCCCCCEEEEEECCCCH-HHHHHHHHCCCEEEEEEEC
T ss_conf 55686303889679998557658-9999997259749999605
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=99.14 E-value=3.7e-11 Score=93.87 Aligned_cols=116 Identities=22% Similarity=0.319 Sum_probs=88.5
Q ss_pred CCCCCCCC-CEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 10124686-0566421421123312222333-21001333222002444201100-012222222222222221002333
Q gi|254780875|r 92 RIEKRDVV-RILDLGTGTGAVCLALLKESPF-FKGVGVDISCKALEIAKSNAVTN-GVSERFDTLQSDWFSSVEGLFDVI 168 (264)
Q Consensus 92 ~~~~~~~~-~vLDlG~GsG~i~i~la~~~~~-~~v~~~Dis~~al~~A~~N~~~~-~~~~~i~~~~~d~~~~~~~~fD~I 168 (264)
.+...+.- +++|+|||||.|+|.+++..|+ .+|+|+|.+++++...++|++++ ++ +++.++.+|..+.+ +|
T Consensus 14 ~L~l~~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~-~~~~i~~g~ap~~~---~~-- 87 (135)
T TIGR02469 14 KLRLRPGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGV-SNIVIVEGDAPEEL---LN-- 87 (135)
T ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCC---CC--
T ss_conf 7178999946889605748389999973598607999853768987999999982899-96325635568433---36--
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 2011333210012211111235754332101123210256899999853788789998
Q gi|254780875|r 169 VSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 169 vsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
+++|+ . .-..-||..+..||..+ .+..|++.+.++|+|+|.+++-
T Consensus 88 -~~~~~---~-------~~~~~~~Da~fvGGs~~--~~~~il~~~~~~l~~GGr~v~n 132 (135)
T TIGR02469 88 -SDAPE---D-------SAKLPEPDAVFVGGSGG--KLEEILEAVERRLRPGGRIVLN 132 (135)
T ss_pred -CCCCH---H-------HCCCCCCCEEEECCCCH--HHHHHHHHHHHCCCCCCEEEEE
T ss_conf -77771---0-------05887468888838971--7899999998505968888885
No 63
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=3.4e-11 Score=94.08 Aligned_cols=172 Identities=21% Similarity=0.253 Sum_probs=115.2
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 44237677504620512235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 59 DFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 59 ~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
.|.|+.+.+-++ ---||-|.-.=|++-+++... .-.+.++||+.+|||++++-.++ +-...++.+|.|.+|+.+.+
T Consensus 8 ~~kgr~L~~p~~-~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~l~ 83 (187)
T COG0742 8 KYKGRKLKTPDG-PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKAVKILK 83 (187)
T ss_pred CCCCCCCCCCCC-CCCCCCCHHHHHHHHHHCCCC--CCCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHH
T ss_conf 406977257999-986887168889999873434--45798899946876476899985-78856999965989999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCC---CCCH--HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 2011000122222222222222---2100--2333201133321001221111123575433210112321025689999
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSS---VEGL--FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV 213 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~---~~~~--fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~ 213 (264)
+|++..+++.+..++..|.... ..++ ||+|...|||= .. ..++ ..+ .+.-.-
T Consensus 84 ~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~--~~--l~~~-------~~~------------~~~~~~ 140 (187)
T COG0742 84 ENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA--KG--LLDK-------ELA------------LLLLEE 140 (187)
T ss_pred HHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCCCC--CC--HHHH-------HHH------------HHHHHH
T ss_conf 999984876125998400899987227788512899689975--36--0668-------999------------988876
Q ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 98537887899981766799999999978980589980568997599997
Q gi|254780875|r 214 SRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFC 263 (264)
Q Consensus 214 ~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~ 263 (264)
..+|+|+|++++|++...... -.-.+|...+-. -+|..++....
T Consensus 141 ~~~L~~~~~iv~E~~~~~~~~----~~~~~~~~~r~k--~yG~t~l~~y~ 184 (187)
T COG0742 141 NGWLKPGALIVVEHDKDVELP----ELPANFELHREK--KYGQTKLTFYR 184 (187)
T ss_pred CCCCCCCCEEEEEECCCCCCC----CCCCCEEEEEEE--ECCCEEEEEEE
T ss_conf 587788968999827877756----567873899872--44977999999
No 64
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.12 E-value=3.5e-11 Score=94.04 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=92.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 37677504620512235655531012332110124686056642142112331222233321001333222002444201
Q gi|254780875|r 62 NVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 62 ~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~ 141 (264)
.-+++.++.+| -++-+|++ +.+ . ..++.++||+|||.|--++.||.. +..|+|+|+|+.|++.++.-+
T Consensus 5 ~e~y~~~~Y~~-~~~hs~~~-~~~-~-------~~~~g~~LDlgcG~Grna~~La~~--G~~VtavD~s~~al~~~~~~a 72 (198)
T PRK11207 5 DENYFTDKYGL-TRTHSEVL-EAV-K-------VVKPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPMSIANLERIK 72 (198)
T ss_pred HHHHHHCCCCC-CCCCHHHH-HHH-C-------CCCCCCEEEECCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH
T ss_conf 34444414888-99978999-873-3-------589974777247887869999868--985999979999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 1000122222222222222-210023332011333210012211111235754332101123210256899999853788
Q gi|254780875|r 142 VTNGVSERFDTLQSDWFSS-VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKD 220 (264)
Q Consensus 142 ~~~~~~~~i~~~~~d~~~~-~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~ 220 (264)
..-+++ ++.+...|+... +++.||+|+|. ..+.-++++ .+.+++....+.++||
T Consensus 73 ~~~~l~-~v~~~~~Dl~~~~~~~~yDlIlst------vv~~fl~p~------------------~~p~iia~mq~~t~PG 127 (198)
T PRK11207 73 AAENLD-NLHTRVVDLNNLTFDGEYDFILST------VVLMFLEAK------------------TIPGLIANMQRCTKPG 127 (198)
T ss_pred HHCCCC-EEEEEEECCCCCCCCCCCCEEEEE------EEEEECCHH------------------HHHHHHHHHHHHCCCC
T ss_conf 875998-246562031238877770589786------452104866------------------7899999999960899
Q ss_pred CEEEEE
Q ss_conf 789998
Q gi|254780875|r 221 GLCSVE 226 (264)
Q Consensus 221 G~l~lE 226 (264)
|+.++.
T Consensus 128 G~~LIV 133 (198)
T PRK11207 128 GYNLIV 133 (198)
T ss_pred CEEEEE
T ss_conf 489999
No 65
>KOG2187 consensus
Probab=99.11 E-value=3.8e-11 Score=93.80 Aligned_cols=158 Identities=23% Similarity=0.325 Sum_probs=103.3
Q ss_pred CCCHHHHCCC----EEEEEEEEEEECCCCCHH--HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9837685363----144237677504620512--2356555310123321101246860566421421123312222333
Q gi|254780875|r 48 HESIHRILGW----RDFYNVRLTLSSDTFEPR--PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPF 121 (264)
Q Consensus 48 g~Pl~YIlg~----~~F~~~~f~v~~~vLIPR--peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~ 121 (264)
+.|++++-|. -.+.|++|.+.|+.|--- +--|.|-..+=++. .......++|+|||||.|++++|+...
T Consensus 332 ~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~~~~- 406 (534)
T KOG2187 332 GKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALARGVK- 406 (534)
T ss_pred CCCEEEECCCCEEEEECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHH----CCCCCCEEEEEEECCCCEEHHHHCCCC-
T ss_conf 998289746627773007768997763141147088899999999970----899884799863068840000102666-
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCC-HH---H-HHHHCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2100133322200244420110001222222222---22222210-02---3-332011333210012211111235754
Q gi|254780875|r 122 FKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS---DWFSSVEG-LF---D-VIVSNPPYIESVIVDCLGLEVRDFDPR 193 (264)
Q Consensus 122 ~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~---d~~~~~~~-~f---D-~IvsNPPYI~~~~~~~l~~~v~~~EP~ 193 (264)
.|+|++++++|+.-|++||+.||+++ .+|+.| |.+..+.. .+ + +.+.+||=
T Consensus 407 -~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR------------------- 465 (534)
T KOG2187 407 -RVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR------------------- 465 (534)
T ss_pred -CEEEEECCHHHCCHHHHCCHHCCCCC-CEEEECCHHHCCCHHCCCCCCCCCEEEEECCCC-------------------
T ss_conf -12102338454443554001158654-024306420015012056788875689978886-------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHHH
Q ss_conf 33210112321025689999985378878999817-667999999999
Q gi|254780875|r 194 ISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG-YNQKVDVVRIFE 240 (264)
Q Consensus 194 ~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig-~~q~~~v~~ll~ 240 (264)
-|+.. .+++....+-++.-.++.-.. +.++..+..++.
T Consensus 466 -------~Glh~--~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~ 504 (534)
T KOG2187 466 -------KGLHM--KVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCS 504 (534)
T ss_pred -------CCCCH--HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHC
T ss_conf -------76109--9999998534755058997166775303787615
No 66
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.5e-10 Score=89.81 Aligned_cols=148 Identities=28% Similarity=0.343 Sum_probs=104.5
Q ss_pred EEEEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 3767750462051--22356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r 62 NVRLTLSSDTFEP--RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 62 ~~~f~v~~~vLIP--RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
+..|.+.++.|.= ..=+|-|.++|+++. +..+.-+++|+-||.|.+++.+|+. ..+|+|+|+++.|++.|++
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~----~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~ 333 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWL----ELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQE 333 (432)
T ss_pred CEEEEECCCCCEEECHHHHHHHHHHHHHHH----HCCCCCEEEECCCCCCHHHHHHCCC--CCEEEEEECCHHHHHHHHH
T ss_conf 638875799741339999999999999997----4369977999355887013553124--6579999648999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 01100012222222222222221-----0023332011333210012211111235754332101123210256899999
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSVE-----GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVS 214 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~~-----~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~ 214 (264)
||+.|++.+ +.|..++..+... ..+|.||-+||= . |++ +.+++..
T Consensus 334 NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR------~--------------------G~~--~~~lk~l- 383 (432)
T COG2265 334 NAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPR------A--------------------GAD--REVLKQL- 383 (432)
T ss_pred HHHHCCCCC-EEEEECCHHHHHHHHCCCCCCCEEEECCCC------C--------------------CCC--HHHHHHH-
T ss_conf 999739887-799958688886510025799989989999------9--------------------999--8999999-
Q ss_pred HHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCE
Q ss_conf 853788789998176-67999999999789805
Q gi|254780875|r 215 RHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFL 246 (264)
Q Consensus 215 ~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~ 246 (264)
..++|...+++--.+ ..+.++ ..|.+.||..
T Consensus 384 ~~~~p~~IvYVSCNP~TlaRDl-~~L~~~gy~i 415 (432)
T COG2265 384 AKLKPKRIVYVSCNPATLARDL-AILASTGYEI 415 (432)
T ss_pred HHCCCCCEEEEECCHHHHHHHH-HHHHHCCEEE
T ss_conf 8558986899976878889899-9998579048
No 67
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=99.10 E-value=3.2e-10 Score=87.72 Aligned_cols=169 Identities=23% Similarity=0.303 Sum_probs=124.3
Q ss_pred HCCCCHHHHCCC-----------EE-EEEEEEEEECCCCCHH--HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 749837685363-----------14-4237677504620512--235655531012332110124686056642142112
Q gi|254780875|r 46 LKHESIHRILGW-----------RD-FYNVRLTLSSDTFEPR--PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAV 111 (264)
Q Consensus 46 ~~g~Pl~YIlg~-----------~~-F~~~~f~v~~~vLIPR--peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i 111 (264)
..++|-.-|.|+ .+ |-|++|..+++.||== --|+.|++.+++++ +-...-+|+|+-||-|.+
T Consensus 233 inp~ktnvIFG~~t~~i~G~~~~y~~~~d~~f~lsaR~F~QVN~~~~~~l~~~a~~~l----~Lqg~e~V~DayCG~Gtf 308 (434)
T TIGR00479 233 INPEKTNVIFGEETEVIAGEEPIYELSGDVKFELSARDFFQVNSEQTEKLVDRALEAL----ELQGEEKVVDAYCGVGTF 308 (434)
T ss_pred CCCCCCCEECCCCEEEEECCEEHHHHHCCEEEEECCCCCEECCHHHHHHHHHHHHHHH----HCCCCCEEEEEECCCCCC
T ss_conf 3789874220771168877700322128846875576502018767799999999997----159865578631575520
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------CHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 331222233321001333222002444201100012222222222222221------00233320113332100122111
Q gi|254780875|r 112 CLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE------GLFDVIVSNPPYIESVIVDCLGL 185 (264)
Q Consensus 112 ~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~------~~fD~IvsNPPYI~~~~~~~l~~ 185 (264)
++-||+..+ +++|+|+-+++++-|++||++||++| ++|+++++...++ ..||.|+=-||
T Consensus 309 tLpLA~qak--~v~G~E~v~e~v~~a~~NAe~Ng~~N-~~F~~g~~E~~~p~~~~e~~~~D~~llDPP------------ 373 (434)
T TIGR00479 309 TLPLAKQAK--SVVGVEVVPESVEDAKRNAELNGIAN-VEFLAGTLETVLPKQPWEGISPDVVLLDPP------------ 373 (434)
T ss_pred HHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHCCCCCCCCCCCCEEEECCC------------
T ss_conf 044440121--88887143767899988888603532-013331232110144222677898888888------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 11235754332101123210256899999853788789998176679999999997898058998
Q gi|254780875|r 186 EVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 186 ~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~ 250 (264)
.+ |-+ ..++.... -|+|.-.+|+--.+.--..=.+.|.+.||..|+-.
T Consensus 374 --------R~------GCa--~~~L~~I~-~~kP~rivYVSCNP~TLARDl~~L~~~GfY~i~~~ 421 (434)
T TIGR00479 374 --------RK------GCA--AEVLRTII-KLKPKRIVYVSCNPATLARDLEVLCKEGFYKIEKV 421 (434)
T ss_pred --------CC------CCH--HHHHHHHH-HCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf --------98------745--89999886-20770599984485347999999973796267888
No 68
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.10 E-value=5.1e-11 Score=92.94 Aligned_cols=131 Identities=27% Similarity=0.281 Sum_probs=90.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC--------------------------------CC-
Q ss_conf 235655531012332110124686056642142112331222233--------------------------------32-
Q gi|254780875|r 76 PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP--------------------------------FF- 122 (264)
Q Consensus 76 peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~--------------------------------~~- 122 (264)
|=-|.|.-.++...-. .+...++|--||||-|+|-.|...+ .+
T Consensus 174 pLketLAaAil~lagw----~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~ 249 (381)
T COG0116 174 PLKETLAAAILLLAGW----KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR 249 (381)
T ss_pred CCHHHHHHHHHHHCCC----CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 8569999999997399----999834168877347999999734456876332200455432138889999999999865
Q ss_pred ------CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf ------1001333222002444201100012222222222222221--00233320113332100122111112357543
Q gi|254780875|r 123 ------KGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRI 194 (264)
Q Consensus 123 ------~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~ 194 (264)
.++|+|+++.+++.|+.|+.+-|+.+.|+|.++|.-..-+ +.+|+|||||||=.. +..+
T Consensus 250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-----lg~~-------- 316 (381)
T COG0116 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-----LGSE-------- 316 (381)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCCEEEECCCCHHH-----CCCH--------
T ss_conf 147666589874898999999998997698832899974432166876669989958983011-----1770--------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 32101123210256899999853788789998176
Q gi|254780875|r 195 SLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY 229 (264)
Q Consensus 195 AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~ 229 (264)
++.+ ..|+.+-...++.+..-+..+| ++.
T Consensus 317 ~~v~-----~LY~~fg~~lk~~~~~ws~~v~-tt~ 345 (381)
T COG0116 317 ALVA-----KLYREFGRTLKRLLAGWSRYVF-TTS 345 (381)
T ss_pred HHHH-----HHHHHHHHHHHHHHCCCCEEEE-ECC
T ss_conf 4699-----9999999999987257736999-766
No 69
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.09 E-value=2e-10 Score=89.08 Aligned_cols=143 Identities=22% Similarity=0.229 Sum_probs=100.8
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC-CCCC-CCCC-HHHHHHHC
Q ss_conf 2468605664214211233122223332100133322200244420110001222222222-2222-2210-02333201
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS-DWFS-SVEG-LFDVIVSN 171 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~-d~~~-~~~~-~fD~IvsN 171 (264)
.+.+-.+||-.||||.|.+... +-+++++|+|++.+++.-|+.|.+.+++++ ..+... |... ++++ .||-|++.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag--l~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG--LMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred CCCCCEEECCCCCCCHHHHHHH--HCCCEEEECCHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCEEEEC
T ss_conf 6469876457678348888366--427567603237999855664156627676-1688730221277887742358846
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 13332100122111112357543321011232102568999998537887899981766799999999978980589980
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~k 251 (264)
|||=.+...+...- .+.|+.+++.+.+.|+++|++.|-... .-...+.+.+|..+....
T Consensus 272 PPYGrst~~~~~~l-----------------~~Ly~~~le~~~evLk~gG~~vf~~p~----~~~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 272 PPYGRSTKIKGEGL-----------------DELYEEALESASEVLKPGGRIVFAAPR----DPRHELEELGFKVLGRFT 330 (347)
T ss_pred CCCCCCCCCCCCCH-----------------HHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHCCCEEEEEEE
T ss_conf 99871002455528-----------------999999999999873048489996178----605567643965999997
Q ss_pred CCCCC--CEEEE
Q ss_conf 56899--75999
Q gi|254780875|r 252 DYGGN--DRVLL 261 (264)
Q Consensus 252 D~~g~--~R~vi 261 (264)
.+... -|.+.
T Consensus 331 ~~~H~sLtR~i~ 342 (347)
T COG1041 331 MRVHGSLTRVIY 342 (347)
T ss_pred EEECCCEEEEEE
T ss_conf 764174689999
No 70
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=99.09 E-value=1.5e-10 Score=89.89 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=93.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC-CCCCCCCCC
Q ss_conf 2356555310123321101246860566421421123312222333210013332220024442011000-122222222
Q gi|254780875|r 76 PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG-VSERFDTLQ 154 (264)
Q Consensus 76 peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~-~~~~i~~~~ 154 (264)
|-+..|++...+.........++.+|||||||+|..++++|+..+.++|+.+|. ++++...++|+..|+ ...++.+..
T Consensus 23 ~aa~~La~yL~~~~~~~~~~~~~k~VLELGaG~GL~Gi~~a~~~~~~~V~lTD~-~~~l~~l~~Nv~~N~~~~~~v~~~~ 101 (171)
T pfam10294 23 DAAVVLSKYLEMKITSGGNNLSGKNVLELGSGCGLVGIAVALLLPGASVTITDL-EEAIELMKKNIELNKALSSKVTAKV 101 (171)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 399999999985221353340687678705665758999998579858996383-7899999999997057899669998
Q ss_pred CCCCCCC------CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 2222222------1002333201133321001221111123575433210112321025689999985378878999817
Q gi|254780875|r 155 SDWFSSV------EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG 228 (264)
Q Consensus 155 ~d~~~~~------~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig 228 (264)
-||-+.. .++||+|++ + ++. |.| +.+..+++....+|+|+|.+++-+-
T Consensus 102 LdWg~~~~~~~~~~~~fD~Il~-------s-------D~i-Y~~-----------~~~~~L~~ti~~ll~~~g~~lla~~ 155 (171)
T pfam10294 102 LDWGEELPDDVFDPHPVDLILA-------A-------DCV-YNE-----------DAFPLLVKTLKDLLGKETVILVAYK 155 (171)
T ss_pred EECCCCCCHHHCCCCCCCEEEE-------E-------CEE-ECH-----------HHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 1108988433314677678997-------1-------213-357-----------7799999999999589989999978
Q ss_pred CCHHHHHHHHHH
Q ss_conf 667999999999
Q gi|254780875|r 229 YNQKVDVVRIFE 240 (264)
Q Consensus 229 ~~q~~~v~~ll~ 240 (264)
.. .+...++++
T Consensus 156 ~R-~~~~~~F~~ 166 (171)
T pfam10294 156 KR-REAEKRFFK 166 (171)
T ss_pred CC-CHHHHHHHH
T ss_conf 20-677999999
No 71
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.07 E-value=3.2e-11 Score=94.32 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=100.6
Q ss_pred EEEEEEECCCCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 376775046205--122356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r 62 NVRLTLSSDTFE--PRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 62 ~~~f~v~~~vLI--PRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
+..|.+.|+.|. =+.=+|.|+++++++... .. ..+||+.||+|.+++.||.... +|+|+|+++.|++-|++
T Consensus 175 ~~~f~~~p~sFfQvN~~~~e~l~~~a~~~~~~----~~-~~vlDLYcG~Gtfsl~LA~~~~--~V~gVE~~~~aV~~A~~ 247 (363)
T PRK05031 175 EFIYRQVENSFTQPNAAVNEKMLEWALDATKG----SK-GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQY 247 (363)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC----CC-CCEEEEECCCCHHHHHHHHHCC--EEEEEECCHHHHHHHHH
T ss_conf 46899679984247989999999999997613----89-8289860586642699886268--79999538999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC------------------CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0110001222222222222222------------------1002333201133321001221111123575433210112
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSV------------------EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGID 201 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~------------------~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~d 201 (264)
||+.||+++ ++|+.++..+.. ...||+||-+||= .
T Consensus 248 NA~~N~i~N-~~fi~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~d~vvvDPPR--------------------------~ 300 (363)
T PRK05031 248 NIAANGIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNFSTIFVDPPR--------------------------A 300 (363)
T ss_pred HHHHCCCCC-EEEEECCHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCC--------------------------C
T ss_conf 999869986-4999658999999873431010012466443558648989998--------------------------8
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCCCC----CEEEEEEC
Q ss_conf 3210256899999853788789998176-679999999997898058998-056899----75999979
Q gi|254780875|r 202 GLSHYRTIADGVSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYGGN----DRVLLFCR 264 (264)
Q Consensus 202 Gl~~~~~ii~~~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~g~----~R~vi~~r 264 (264)
|+. +..++.+.+ ++ -.+++--++ +++.++..+ .+ +|...++. =|++=+ +=++++.|
T Consensus 301 Gl~--~~~~~~i~~-~~--rIVYVSCnP~TlaRDl~~L-~~-~y~l~~v~~vDmFPqT~HvE~valL~r 362 (363)
T PRK05031 301 GLD--EETLKLVQN-YE--RILYISCNPETLKENLETL-SQ-THKVERFALFDQFPYTHHMECGVLLEK 362 (363)
T ss_pred CCC--HHHHHHHHC-CC--EEEEEECCHHHHHHHHHHH-HH-CCEEEEEEEECCCCCCCCEEEEEEEEE
T ss_conf 874--999999836-89--0999928989999999998-74-465889998426999972789999980
No 72
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.06 E-value=2e-10 Score=89.10 Aligned_cols=215 Identities=18% Similarity=0.147 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHCCCC-CCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEEC------CC-CCHHH
Q ss_conf 899999999838999898504488-58989999999999989749837685363144237677504------62-05122
Q gi|254780875|r 5 RDSHSFLCRVTGLSSHQVIVDPDS-VLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSS------DT-FEPRP 76 (264)
Q Consensus 5 ~dA~~Ll~~~l~~~~~~l~~~~~~-~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~------~v-LIPRp 76 (264)
.|+.-.+..++++++..++...-+ .-... |+.+.-. .++ -. ...=+|.+|.||= |. |.-||
T Consensus 474 ~~~~~~~~~~l~v~~~~v~~K~R~rqkg~~---QY~k~~~---~~~--~~---~v~E~~~~f~vNl~dYlDtGLFLDhR~ 542 (716)
T PRK11783 474 FDALAATPEVLGIPPEKVVLKTRERQKGKN---QYQKLAQ---KGE--FL---IVTEYGAKLWVNLTDYLDTGLFLDHRP 542 (716)
T ss_pred HHHHHHHHHHHCCCHHHEEEEEECCCCCCC---CCCCCCC---CCC--EE---EEEECCEEEEEECCCCCCCCCCCCCHH
T ss_conf 999999999968986786888852577876---4444546---787--69---999578689997772022674544379
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCC
Q ss_conf 35655531012332110124686056642142112331222233321001333222002444201100012-22222222
Q gi|254780875|r 77 ETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVS-ERFDTLQS 155 (264)
Q Consensus 77 eTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~-~~i~~~~~ 155 (264)
--..+-+. .++.++|-|.|=||..++-.|.- .....+.||.|..-++.|++|...||+. .+-.|+++
T Consensus 543 ~R~~i~~~-----------a~gk~fLNLF~YTgt~sv~Aa~g-GA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~a 610 (716)
T PRK11783 543 TRRMIGQM-----------AKGKRFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQA 610 (716)
T ss_pred HHHHHHHH-----------HCCCCEEEEEECCCCEEHHHHHC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 99999997-----------07884643122256102133527-9612278627087999999999854999634738964
Q ss_pred CCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 222222---10023332011333210012211111235754332101123210256899999853788789998176679
Q gi|254780875|r 156 DWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK 232 (264)
Q Consensus 156 d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~ 232 (264)
|.++.+ .++||+|++.||=.+.+..-.-.-+|.+ ++-.++..+.++|+|+|.++|--.+...
T Consensus 611 D~~~wl~~~~~~fDli~~DPPtFSnSk~m~~~~dvqr---------------Dh~~li~~~~~~L~~~G~l~FS~N~r~F 675 (716)
T PRK11783 611 DCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQR---------------DHVALIKLAMRLLRPGGTLYFSNNKRGF 675 (716)
T ss_pred CHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCC---------------CHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 0899998577766789988999987666788632203---------------0999999999860899689996288763
Q ss_pred HHHHHHHHHCCCCEEEEE-----ECCCCCC
Q ss_conf 999999997898058998-----0568997
Q gi|254780875|r 233 VDVVRIFESRKLFLVNAF-----KDYGGND 257 (264)
Q Consensus 233 ~~v~~ll~~~gf~~v~~~-----kD~~g~~ 257 (264)
.-=.+.+...||....+. .|+.-++
T Consensus 676 ~ld~~~l~~~~~~~~dit~~tip~Df~rn~ 705 (716)
T PRK11783 676 KMDEEGLAKLGLAVEEITQKTLPPDFARNP 705 (716)
T ss_pred CCCHHHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf 428767521596068775445885546799
No 73
>KOG2912 consensus
Probab=99.06 E-value=8.5e-10 Score=84.90 Aligned_cols=200 Identities=18% Similarity=0.229 Sum_probs=126.2
Q ss_pred EEEEEEEECCCCCHH-HHH---HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 237677504620512-235---6555310123321101246860566421421123312222333210013332220024
Q gi|254780875|r 61 YNVRLTLSSDTFEPR-PET---ELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEI 136 (264)
Q Consensus 61 ~~~~f~v~~~vLIPR-peT---E~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~ 136 (264)
+|+...+.+|-|+|+ |-- -.||+-.|..- ...+..-.+-+|+|||.-||--.+.....++...|+|++...+..
T Consensus 64 fgl~veiP~grLcPtVPnR~nYihwI~DLLss~--q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~ 141 (419)
T KOG2912 64 FGLSVEIPLGRLCPTVPNRLNYIHWIEDLLSSQ--QSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNY 141 (419)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCH
T ss_conf 670686687673777765100687899887336--678761663020267534667864000216323664121023554
Q ss_pred HHHCCCCCCCCCCCCCCCCCC-----CC---CC-CCHHHHHHHCCHHHHHHCCCCC--CCCCCCCCCCCCCCCCCC----
Q ss_conf 442011000122222222222-----22---22-1002333201133321001221--111123575433210112----
Q gi|254780875|r 137 AKSNAVTNGVSERFDTLQSDW-----FS---SV-EGLFDVIVSNPPYIESVIVDCL--GLEVRDFDPRISLDGGID---- 201 (264)
Q Consensus 137 A~~N~~~~~~~~~i~~~~~d~-----~~---~~-~~~fD~IvsNPPYI~~~~~~~l--~~~v~~~EP~~AL~gg~d---- 201 (264)
|++|...|++++++++++-+- .+ .. +..||++.||||+.....-... ..+-..--|+.+-+||..
T Consensus 142 a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~ 221 (419)
T KOG2912 142 AKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVS 221 (419)
T ss_pred HHCCCCCCCCCCCEEEEEECCHHHCCHHHHCCCCCCEEEEEECCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 54240003660103577845333201213226765324688328703303234236665678899962010441568876
Q ss_pred -C--CCCHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHCCCCEEEEEECCCCC-CEEEEE
Q ss_conf -3--21025689999985378878999817667-9999999997898058998056899-759999
Q gi|254780875|r 202 -G--LSHYRTIADGVSRHLNKDGLCSVEIGYNQ-KVDVVRIFESRKLFLVNAFKDYGGN-DRVLLF 262 (264)
Q Consensus 202 -G--l~~~~~ii~~~~~~L~~~G~l~lEig~~q-~~~v~~ll~~~gf~~v~~~kD~~g~-~R~vi~ 262 (264)
| ..|..+|+..+..+.+.--|--.-+|..- ...+.+-|.+.|-..+.+..=-+|+ .|+.++
T Consensus 222 eggev~fvnRiitds~~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~kv~itel~qGkTkRW~La 287 (419)
T KOG2912 222 EGGEVSFVNRIITDSFVLRKRIRWYTCMLGKKSSLKPLISKLREQGVTKVKITELVQGKTKRWGLA 287 (419)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEEE
T ss_conf 010788999998888876515468854004534617899999970885378998633652135687
No 74
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=99.02 E-value=7.3e-11 Score=91.92 Aligned_cols=93 Identities=29% Similarity=0.404 Sum_probs=69.9
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHCCHHHHHHC
Q ss_conf 66421421123312222333210013332220024442011000122222222222222--2100233320113332100
Q gi|254780875|r 102 LDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIVSNPPYIESVI 179 (264)
Q Consensus 102 LDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~IvsNPPYI~~~~ 179 (264)
||+|||+|..+..+++ .++.+++|+|+|+.+++.|+++....+ +++.++|..+. .+++||+|+|. ..
T Consensus 1 LDiGcG~G~~~~~l~~-~~~~~v~giD~s~~~i~~a~~~~~~~~----~~~~~~d~~~~~~~~~~fD~I~~~------~~ 69 (95)
T pfam08241 1 LDVGCGTGLLTEALAR-LPGAQVTGVDLSPEMLALARKRAQEDG----LTFVVGDAEDLPFPDESFDVVVSS------LV 69 (95)
T ss_pred CCCCCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHCCCCC----CEEEEECCCCCCCCCCCCCEEEEC------CC
T ss_conf 9646249999999984-579999999497899877663102669----479980332467554568599983------30
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 1221111123575433210112321025689999985378878999
Q gi|254780875|r 180 VDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 180 ~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
++.+ .....+++++.++|||||++++
T Consensus 70 l~~~--------------------~~~~~~l~~~~r~LkpgG~l~i 95 (95)
T pfam08241 70 LHHL--------------------PDPERALREIARVLKPGGKLVI 95 (95)
T ss_pred HHHC--------------------CCHHHHHHHHHHHCCCCEEEEC
T ss_conf 6646--------------------8999999999987786949979
No 75
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=99.02 E-value=7.3e-11 Score=91.92 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=98.8
Q ss_pred EEEEEEECCCCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 376775046205--122356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r 62 NVRLTLSSDTFE--PRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 62 ~~~f~v~~~vLI--PRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
+..|.+.|+.|. =+.-+|.|+++|+++.. ..+ ..|+|+-||+|.+++.+|.... +|+|+|+++.|++.|++
T Consensus 165 ~~~~~~~p~sFfQvN~~~~~~l~~~a~~~~~----~~~-~~vlDlYcG~Gtfsl~lA~~~~--~V~GvE~~~~AV~~A~~ 237 (353)
T pfam05958 165 EFIYRQVENSFTQPNAAVNIKMLEWACEVTQ----GSK-GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQY 237 (353)
T ss_pred EEEEEECCCCEECCCHHHHHHHHHHHHHHHH----CCC-CCEEEEECCCCHHHHHHHHHCC--EEEEEECCHHHHHHHHH
T ss_conf 2599858999778698999999999999862----689-9589984688888899986478--79999625999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC------------------CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0110001222222222222222------------------1002333201133321001221111123575433210112
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSV------------------EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGID 201 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~------------------~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~d 201 (264)
|++.||+++ ++|+.++..+.. ...||+||-+||= .
T Consensus 238 Na~~N~i~N-v~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~vvlDPPR--------------------------~ 290 (353)
T pfam05958 238 NIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR--------------------------A 290 (353)
T ss_pred HHHHCCCCC-EEEEECCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEECCCC--------------------------C
T ss_conf 899869986-4999728999999875242233203666322467725848987--------------------------7
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCCCC
Q ss_conf 3210256899999853788789998176-679999999997898058998-056899
Q gi|254780875|r 202 GLSHYRTIADGVSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYGGN 256 (264)
Q Consensus 202 Gl~~~~~ii~~~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~g~ 256 (264)
|++ ..+++... +..-.+++--++ +++.++..+. + ||...++. =|++=.
T Consensus 291 G~~--~~~~~~i~---~~~rIvYVSCnP~TlaRDl~~L~-~-~Y~l~~v~pvDmFPq 340 (353)
T pfam05958 291 GLD--PDTCKLVQ---AYERILYISCNPETLKANLEQLS-E-THRVERFALFDQFPY 340 (353)
T ss_pred CCH--HHHHHHHH---CCCCEEEEECCHHHHHHHHHHHH-C-CCEEEEEEEECCCCC
T ss_conf 773--99999984---69968999489999999999984-0-647879998236999
No 76
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=98.99 E-value=1.5e-08 Score=76.63 Aligned_cols=195 Identities=18% Similarity=0.171 Sum_probs=123.8
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf 50448858989999999999989749837685363144237677504620512235655531012332110124686056
Q gi|254780875|r 23 IVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRIL 102 (264)
Q Consensus 23 ~~~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vL 102 (264)
.......+++++..++........+ |+..+-.....=.....+..++|.+. ........+..+++
T Consensus 10 ~~~l~~~l~~~~~~~l~~y~~ll~~-------------~N~~~NLt~~~~~~~~~~rHi~DSl~--~~~~~~~~~~~~vl 74 (216)
T PRK00107 10 LAELGIELSDEQLEQLEAYVELLVK-------------WNKKYNLTAIRDPEEMWVRHILDSLA--LLPYLQGEKPIRVL 74 (216)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHH-------------HCCCEEEEECCCHHHHHHHHHHHHHH--HHHHCCCCCCCEEE
T ss_conf 9985999999999999999999998-------------65836448569989999998885788--98733766587799
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHCCHHHHHHCCC
Q ss_conf 64214211233122223332100133322200244420110001222222222222222-10023332011333210012
Q gi|254780875|r 103 DLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-EGLFDVIVSNPPYIESVIVD 181 (264)
Q Consensus 103 DlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-~~~fD~IvsNPPYI~~~~~~ 181 (264)
|+|||.|-=++-+|-.+|+.+++.+|-+.+=+..-+.=+...++++ ++++++...+.. ..+||+|+|=
T Consensus 75 DiGSGaGfPGiplAI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fD~itsR---------- 143 (216)
T PRK00107 75 DVGSGAGFPGIPLAIARPDLQVTLVDSLGKKIAFLRQVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSR---------- 143 (216)
T ss_pred ECCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCC-EEEEEHHHHCCCCCCCCCEEEEE----------
T ss_conf 7079999426789997787729997387699999999999769998-79986354404656786689860----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH---HHHHCCCCEEEEE---ECCCC
Q ss_conf 21111123575433210112321025689999985378878999817667999999---9997898058998---05689
Q gi|254780875|r 182 CLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVR---IFESRKLFLVNAF---KDYGG 255 (264)
Q Consensus 182 ~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~---ll~~~gf~~v~~~---kD~~g 255 (264)
-+ .-+..+++.+..+++++|.+++==|..-.+++.+ .++..|+....+. -...+
T Consensus 144 ----Av----------------a~l~~l~~~~~~~l~~~g~~i~~KG~~~~~Ei~~a~~~~~~~~~~~~~~~~~~lp~~~ 203 (216)
T PRK00107 144 ----AV----------------ASLSDLVELCLPLLKPGGRFLALKGQDPEEEIAELPKAIKKLGGKVESVIELKVPGLD 203 (216)
T ss_pred ----HH----------------HCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
T ss_conf ----54----------------0699999999975488979999879995999999898999839759999999889998
Q ss_pred CCEEEEEE
Q ss_conf 97599997
Q gi|254780875|r 256 NDRVLLFC 263 (264)
Q Consensus 256 ~~R~vi~~ 263 (264)
.+|.++..
T Consensus 204 ~~R~iv~i 211 (216)
T PRK00107 204 GERHLVVI 211 (216)
T ss_pred CEEEEEEE
T ss_conf 73899999
No 77
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.96 E-value=5.8e-10 Score=86.02 Aligned_cols=183 Identities=20% Similarity=0.179 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC----CCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 20512235655531012332110124686056642142112331222233----32100133322200244420110001
Q gi|254780875|r 71 TFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP----FFKGVGVDISCKALEIAKSNAVTNGV 146 (264)
Q Consensus 71 vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~----~~~v~~~Dis~~al~~A~~N~~~~~~ 146 (264)
.+-||.-++++|+.+.- .+..+|.|-+||||...+..+.... +..++|.|+++..+.+|+.|.-.||+
T Consensus 168 fyTP~~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi 239 (489)
T COG0286 168 FYTPREVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI 239 (489)
T ss_pred CCCHHHHHHHHHHHCCC--------CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 05879999999997577--------6565234733540379999999997515550499895668899999961166278
Q ss_pred CCCCCCCCCCCCCC-------CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCC
Q ss_conf 22222222222222-------21002333201133321001221111123575433210-11232102568999998537
Q gi|254780875|r 147 SERFDTLQSDWFSS-------VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDG-GIDGLSHYRTIADGVSRHLN 218 (264)
Q Consensus 147 ~~~i~~~~~d~~~~-------~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~g-g~dGl~~~~~ii~~~~~~L~ 218 (264)
+..+...++|-+.. ..++||.|++||||-..+........ ..+ .+.-.+| ..-.-.-+..++.....+|+
T Consensus 240 ~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~~~-~~~-~~~~~~g~~~~~~~~d~afi~h~~~~l~ 317 (489)
T COG0286 240 EGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLES-EQD-ERFFFYGVFPTKNSADLAFLQHILYKLK 317 (489)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCC-CHHCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 74223433442368733234665550168657995544434433100-243-2000257788895278999999999718
Q ss_pred CCCEEEEEECC------CHHHHHHHHHHHCCCCEEEEE---EC--CCCCCEEEEEE
Q ss_conf 88789998176------679999999997898058998---05--68997599997
Q gi|254780875|r 219 KDGLCSVEIGY------NQKVDVVRIFESRKLFLVNAF---KD--YGGNDRVLLFC 263 (264)
Q Consensus 219 ~~G~l~lEig~------~q~~~v~~ll~~~gf~~v~~~---kD--~~g~~R~vi~~ 263 (264)
|+|...+.+.. .-...+++.+.+......-+. +. -.|.+.+++..
T Consensus 318 ~~g~aaivl~~gvlfr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~tgi~~~Il~l 373 (489)
T COG0286 318 PGGRAAIVLPDGVLFRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNTGIPTNILFL 373 (489)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 67705899258866277722579999875031335342686420357776089996
No 78
>PRK06202 hypothetical protein; Provisional
Probab=98.96 E-value=9.7e-11 Score=91.11 Aligned_cols=75 Identities=29% Similarity=0.411 Sum_probs=62.6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCC----CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 2468605664214211233122223----332100133322200244420110001222222222222222100233320
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKES----PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVS 170 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~----~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~Ivs 170 (264)
...+.+|||+|||+|-++..+|+.. ...+++|+|+++.++++|++++...+++ +.+...|.+....+.||+|+|
T Consensus 59 ~~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~--~~~~~~d~l~~~~~~~DvV~~ 136 (233)
T PRK06202 59 PDRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVT--FRFAVSDELVAEGERFDVVYS 136 (233)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCC--EEEEEHHHHCCCCCCCCEEEH
T ss_conf 788728998347875799999999975599638999779889999998734036983--699734320245788757603
Q ss_pred C
Q ss_conf 1
Q gi|254780875|r 171 N 171 (264)
Q Consensus 171 N 171 (264)
|
T Consensus 137 s 137 (233)
T PRK06202 137 N 137 (233)
T ss_pred H
T ss_conf 2
No 79
>KOG1540 consensus
Probab=98.96 E-value=7.4e-10 Score=85.32 Aligned_cols=110 Identities=20% Similarity=0.305 Sum_probs=83.2
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCC------CCCCCCCCCCCCHHHHHHCCCCCCCCCC--CCCCCCCCCC--CCC
Q ss_conf 01246860566421421123312222333------2100133322200244420110001222--2222222222--221
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESPF------FKGVGVDISCKALEIAKSNAVTNGVSER--FDTLQSDWFS--SVE 162 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~~------~~v~~~Dis~~al~~A~~N~~~~~~~~~--i~~~~~d~~~--~~~ 162 (264)
+...+..++||+|||||-|+.-+....++ .+|+.+|||+++|+++++.+++.++..+ +.+.++|..+ +-+
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 58777875898347752567779876113457777617999389899999987775159776871699947701089997
Q ss_pred CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEEC
Q ss_conf 00233320113332100122111112357543321011232102568999998537887899-9817
Q gi|254780875|r 163 GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS-VEIG 228 (264)
Q Consensus 163 ~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~-lEig 228 (264)
+.||..+ +.-.++++ -.+.+.++++.+.|||||.+. +|+.
T Consensus 176 ~s~D~yT-------------iafGIRN~-------------th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540 176 DSFDAYT-------------IAFGIRNV-------------THIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred CCCEEEE-------------EECCEECC-------------CCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 7511588-------------84211147-------------87789999998752778679999735
No 80
>KOG2899 consensus
Probab=98.94 E-value=3.6e-10 Score=87.38 Aligned_cols=114 Identities=25% Similarity=0.321 Sum_probs=80.9
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC-CC-------------------------
Q ss_conf 2468605664214211233122223332100133322200244420110001-22-------------------------
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGV-SE------------------------- 148 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~-~~------------------------- 148 (264)
-..+..+||+||-||.+++++|+.+....+.|+||++.-+..|++|....-- +.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 24762057506775465899998606433467615689999999735660101033457875433544454101244665
Q ss_pred --------CCCCCC-------CCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --------222222-------22222221002333201133321001221111123575433210112321025689999
Q gi|254780875|r 149 --------RFDTLQ-------SDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV 213 (264)
Q Consensus 149 --------~i~~~~-------~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~ 213 (264)
++.|.. .|+++....+||+|+| .+|..| +-|.-|++|| ++++..+
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlc--------------LSiTkW---IHLNwgD~GL---~~ff~ki 195 (288)
T KOG2899 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILC--------------LSITKW---IHLNWGDDGL---RRFFRKI 195 (288)
T ss_pred CCCCCCCCCHHCCCCCEEEECCHHHHHCCCCCCEEEE--------------EEEEEE---EECCCCCHHH---HHHHHHH
T ss_conf 1003677201013233798600455505654227999--------------773346---7645645789---9999999
Q ss_pred HHHCCCCCEEEEEEC
Q ss_conf 985378878999817
Q gi|254780875|r 214 SRHLNKDGLCSVEIG 228 (264)
Q Consensus 214 ~~~L~~~G~l~lEig 228 (264)
.++|.|||.|++|--
T Consensus 196 s~ll~pgGiLvvEPQ 210 (288)
T KOG2899 196 SSLLHPGGILVVEPQ 210 (288)
T ss_pred HHHHCCCCEEEECCC
T ss_conf 986086857997588
No 81
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=83.74 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 12235655531012332110124686056642142112331222233321001333222002444201100012222222
Q gi|254780875|r 74 PRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTL 153 (264)
Q Consensus 74 PRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~ 153 (264)
-||-.|++... ......+|.|||||.|.-.-.|+.++|.++++|+|-|+++++-|+.- + -++.|.
T Consensus 16 tRPa~dLla~V---------p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----l-p~~~f~ 80 (257)
T COG4106 16 TRPARDLLARV---------PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----L-PDATFE 80 (257)
T ss_pred CCCHHHHHHHC---------CCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH-----C-CCCCEE
T ss_conf 57388998647---------86664103455778877889999868888676046999999999974-----8-997321
Q ss_pred CCCCCCCCC-CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 222222221-0023332011333210012211111235754332101123210256899999853788789998176679
Q gi|254780875|r 154 QSDWFSSVE-GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK 232 (264)
Q Consensus 154 ~~d~~~~~~-~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~ 232 (264)
.+|+-...+ ..+|+++|| ...+.++.. -+++...-..|.|||++.+.+..+..
T Consensus 81 ~aDl~~w~p~~~~dllfaN------AvlqWlpdH--------------------~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 81 EADLRTWKPEQPTDLLFAN------AVLQWLPDH--------------------PELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred CCCHHHCCCCCCCCHHHHH------HHHHHCCCC--------------------HHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 0527544998763303344------366443640--------------------89999999850888569997887647
Q ss_pred HH
Q ss_conf 99
Q gi|254780875|r 233 VD 234 (264)
Q Consensus 233 ~~ 234 (264)
+.
T Consensus 135 ep 136 (257)
T COG4106 135 EP 136 (257)
T ss_pred CH
T ss_conf 64
No 82
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=98.92 E-value=6.7e-10 Score=85.57 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=81.4
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCH
Q ss_conf 246860566421421123312222333210013332220024442011000122222222222222-2100233320113
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-VEGLFDVIVSNPP 173 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-~~~~fD~IvsNPP 173 (264)
.-++.++||+|||+|-=++.||+. +..|+|+|+|+.+++.++.-++.-++. +.+...|+.+. +++.||+|+|
T Consensus 28 ~i~pgk~LDlgcG~GRNslyLa~~--G~~VtavD~n~~aL~~l~~ia~~e~l~--i~~~~~Din~~~~~e~YD~Iis--- 100 (192)
T pfam03848 28 TVKPGKALDLGCGQGRNSLFLSLL--GYDVTAVDHNENSIANLQDIKEKENLD--IPTALYDINSASIDENYDFILS--- 100 (192)
T ss_pred HCCCCCEEEECCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCEEEE---
T ss_conf 379974666047897318999868--991799979999999999999970997--5268731555687677687988---
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 332100122111112357543321011232102568999998537887899981
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI 227 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi 227 (264)
+-.+.-++++ -+-.+|.+..+..+|||..+++-
T Consensus 101 ---TVvfmFL~~~------------------~ip~iI~~mq~~T~pGGynlIv~ 133 (192)
T pfam03848 101 ---TVVLMFLQAE------------------RIPAIIANMQEHTNVGGYNLIVA 133 (192)
T ss_pred ---EEEEEECCHH------------------HHHHHHHHHHHHCCCCCEEEEEE
T ss_conf ---8877731867------------------87799999998528998899997
No 83
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.91 E-value=4.3e-10 Score=86.89 Aligned_cols=109 Identities=28% Similarity=0.455 Sum_probs=84.0
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 33211012468605664214211233122223332100133322200244420110001222222222222222100233
Q gi|254780875|r 88 FSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDV 167 (264)
Q Consensus 88 ~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~ 167 (264)
....+..-++.-+|||+|||.|.+++.+|+++ +++|+++-+|++-.+.|++.++ |++ +++...|.. .++++||-
T Consensus 158 ~i~~kl~l~~G~~VLeIGcGWGgla~~aA~~~-g~~VtgiTlS~eQ~~~a~~r~~--gl~--v~v~l~DYR-d~~g~fD~ 231 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GLP--VEIRLQDYR-DLNGQFDR 231 (383)
T ss_pred HHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHC--CCC--CEEEECCHH-HCCCCCCE
T ss_conf 99986489999979885787499999999974-9759998588999999999973--898--789971524-43677355
Q ss_pred HHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 32011333210012211111235754332101123210256899999853788789998
Q gi|254780875|r 168 IVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 168 IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
||| | ++ +| | =|...+..+++.+.++|+|+|.+++.
T Consensus 232 IvS----I----------eM--~E---h-----VG~~~~~~yF~~i~~lLkp~G~~~lq 266 (383)
T PRK11705 232 IVS----V----------GM--FE---H-----VGPKNYRTYFEVVDRCLKPDGLFLLH 266 (383)
T ss_pred EEE----E----------EH--HH---H-----CCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999----7----------14--86---5-----28777999999999856999739999
No 84
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=98.88 E-value=1e-09 Score=84.36 Aligned_cols=132 Identities=17% Similarity=0.261 Sum_probs=94.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHH
Q ss_conf 237677504620512235655531012332110124686056642142112331222233-3210013332220024442
Q gi|254780875|r 61 YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 61 ~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~ 139 (264)
-+..+-+..+..|-.|-+.-..-..+ +-+++-+|||+|||||-.+..+|+... ..+|+++|+++..++.|++
T Consensus 44 ~D~~lpi~~~~tis~P~~~a~ml~~L-------~l~~g~~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~ 116 (205)
T pfam01135 44 EDIPLSIGYGQTISAPHMHAMMLELL-------ELKPGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARR 116 (205)
T ss_pred CCCCCCCCCCCEECHHHHHHHHHHHC-------CCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 68871479998886389999999970-------78999989996699659999999983878769998358999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 01100012222222222222221--0023332011333210012211111235754332101123210256899999853
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHL 217 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L 217 (264)
|..++++. |+.+.++|.....+ .+||.|+.. .-.... | ..++ +-|
T Consensus 117 ~l~~~~~~-nV~~~~gdg~~g~~~~apfD~Iiv~------aa~~~i--------P--------------~~l~----~qL 163 (205)
T pfam01135 117 NLEKLGLE-NVIVVVGDGRQGWPEFAPYDAIHVG------AAAPEI--------P--------------EALI----DQL 163 (205)
T ss_pred HHHHHCCC-CEEEEECCCCCCCCCCCCCCEEEEE------EECCCC--------C--------------HHHH----HHC
T ss_conf 99984888-6589845645588333980589997------506768--------8--------------9999----962
Q ss_pred CCCCEEEEEECCCHH
Q ss_conf 788789998176679
Q gi|254780875|r 218 NKDGLCSVEIGYNQK 232 (264)
Q Consensus 218 ~~~G~l~lEig~~q~ 232 (264)
++||.+++-+|....
T Consensus 164 ~~gGrLv~pvg~~~~ 178 (205)
T pfam01135 164 KEGGRLVIPVGPNGN 178 (205)
T ss_pred CCCCEEEEEECCCCC
T ss_conf 879789999878995
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.85 E-value=1.6e-09 Score=83.19 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=96.8
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHH
Q ss_conf 4423767750462051223565553101233211012468605664214211233122223-332100133322200244
Q gi|254780875|r 59 DFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIA 137 (264)
Q Consensus 59 ~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A 137 (264)
.+-+..+-+..+.-|..|-+.-..-..+ +.+++.+|||+|||||-.+-.+|+.. +..+|+++|+.++-.+.|
T Consensus 41 AY~D~~lpi~~~~tis~P~~~a~ml~~L-------~~~~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A 113 (205)
T PRK13944 41 AYEDRPLPLFAGATISAPHMVAMMCELI-------EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYA 113 (205)
T ss_pred CCCCCCEECCCCCEECHHHHHHHHHHHH-------CCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 7369975148998997799999999970-------689999899978985199999999837477179995369999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4201100012222222222222221--00233320113332100122111112357543321011232102568999998
Q gi|254780875|r 138 KSNAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSR 215 (264)
Q Consensus 138 ~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~ 215 (264)
++|..+.+..+.+.+.++|.....+ ++||.|+.. ...... | ..++ +
T Consensus 114 ~~~l~~l~~~n~v~v~~gdg~~G~~~~apfD~Iiv~------aa~~~i--------P--------------~~l~----~ 161 (205)
T PRK13944 114 AQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT------AAASTI--------P--------------SALV----R 161 (205)
T ss_pred HHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEE------EECCCC--------C--------------HHHH----H
T ss_conf 999998598633067976556577434980489998------507768--------9--------------9999----8
Q ss_pred HCCCCCEEEEEECCCH
Q ss_conf 5378878999817667
Q gi|254780875|r 216 HLNKDGLCSVEIGYNQ 231 (264)
Q Consensus 216 ~L~~~G~l~lEig~~q 231 (264)
-|++||.+++-+|..-
T Consensus 162 QL~~gGrLV~Pvg~~~ 177 (205)
T PRK13944 162 QLKDGGVLVIPVEEGV 177 (205)
T ss_pred HCCCCCEEEEEECCCC
T ss_conf 5487979999987899
No 86
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=98.83 E-value=1e-09 Score=84.42 Aligned_cols=102 Identities=24% Similarity=0.244 Sum_probs=82.6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCHH
Q ss_conf 24686056642142112331222233-32100133322200244420110001222222222222222--------1002
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV--------EGLF 165 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~--------~~~f 165 (264)
...+.+|||+||++|.=++.+|...| +.+++.+|++++..+.|++|.++.|+++++++..+|..+.+ .++|
T Consensus 42 ~~~ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~f 121 (204)
T pfam01596 42 LVGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEF 121 (204)
T ss_pred HHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCC
T ss_conf 75987899983432599999998489996899998048999999999997798744799987499999999844777764
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 166 DVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 166 D~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
|+|+- +.. + .-|...++.+.++|+|||.+++
T Consensus 122 D~vFi-----Dad------K------------------~~Y~~y~e~~~~lL~~gGiii~ 152 (204)
T pfam01596 122 DFAFV-----DAD------K------------------SSYPNYYERLLELVKVGGLIAI 152 (204)
T ss_pred CEEEE-----ECC------H------------------HHHHHHHHHHHHHHCCCEEEEE
T ss_conf 38998-----188------8------------------7779999999986369809999
No 87
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=1.5e-08 Score=76.78 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=107.8
Q ss_pred EEEEEEEECC--CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 2376775046--20512235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 61 YNVRLTLSSD--TFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 61 ~~~~f~v~~~--vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
.|..|++|.. -+=||--||-.-- .+. -.++-.|+|+.+|.|..++.+|+.-.-. |+|+|++|.|++..+
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER~Rv--a~~------v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~ 228 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTERARV--AEL------VKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLK 228 (341)
T ss_pred CCEEEEECHHHEEECCCCHHHHHHH--HHH------HCCCCEEEECCCCCCCCHHHHHHCCCCE-EEEEECCHHHHHHHH
T ss_conf 8889997247848778744789999--863------0699889983578654012466547863-999945989999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 201100012222222222222221--002333201133321001221111123575433210112321025689999985
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRH 216 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~ 216 (264)
+|+..|++++++..++||..+... +.+|-|+.|-|.- . ..++..+...
T Consensus 229 eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~-------------a-----------------~~fl~~A~~~ 278 (341)
T COG2520 229 ENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPKS-------------A-----------------HEFLPLALEL 278 (341)
T ss_pred HHHHHCCCCCEEEEEECCHHHHHHCCCCCCEEEECCCCC-------------C-----------------HHHHHHHHHH
T ss_conf 999855765515679664888502046678898389872-------------0-----------------2338999998
Q ss_pred CCCCCEEEE-EECCCH------HHHHHHHHHHCCCC----EEEEEECCCCC
Q ss_conf 378878999-817667------99999999978980----58998056899
Q gi|254780875|r 217 LNKDGLCSV-EIGYNQ------KVDVVRIFESRKLF----LVNAFKDYGGN 256 (264)
Q Consensus 217 L~~~G~l~l-Eig~~q------~~~v~~ll~~~gf~----~v~~~kD~~g~ 256 (264)
++++|++-+ ++...- ...+.....+.|+. ..+..++|+=.
T Consensus 279 ~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~ 329 (341)
T COG2520 279 LKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPG 329 (341)
T ss_pred HHCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 514867999962243411112599999987643676327889993231897
No 88
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=98.83 E-value=1.2e-08 Score=77.23 Aligned_cols=145 Identities=15% Similarity=0.239 Sum_probs=106.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC--------CCCCHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCHHH
Q ss_conf 4686056642142112331222233321001333--------222002444201100012-2222222222222210023
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDI--------SCKALEIAKSNAVTNGVS-ERFDTLQSDWFSSVEGLFD 166 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Di--------s~~al~~A~~N~~~~~~~-~~i~~~~~d~~~~~~~~fD 166 (264)
.+..-+||||||.|...+.+|+.+|+....|+|+ .+..+..|-+.+.++|+. .|+.+.++|.-... +
T Consensus 18 ~~~p~~~EIGcG~G~fl~~~A~~nP~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~----~ 93 (216)
T TIGR00091 18 NQKPLVLEIGCGKGRFLIKMAKQNPDKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELL----E 93 (216)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH----H
T ss_conf 145448984168760268997727997277789998874102272899887557661784421352213602320----4
Q ss_pred HHHHC-CH-----HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHH
Q ss_conf 33201-13-----3321001221111123575433210112321025689999985378878999817667-99999999
Q gi|254780875|r 167 VIVSN-PP-----YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQ-KVDVVRIF 239 (264)
Q Consensus 167 ~IvsN-PP-----YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q-~~~v~~ll 239 (264)
-..++ || ||...|+-.-. +|+=+. -....+++...+.|++||.+.|--+..+ .|...+.|
T Consensus 94 ~~~~~~PP~l~k~f~~FPDPW~Kk----RH~KRR---------~~~~~Fl~~~~~~L~~~G~i~~~TD~~~lfE~mL~~l 160 (216)
T TIGR00091 94 KFFPDGPPSLSKVFLNFPDPWPKK----RHNKRR---------ITQPHFLKEVANVLKKGGVIELKTDNEPLFEDMLKVL 160 (216)
T ss_pred HHHCCCCCCEEEEEEECCCCCHHH----HHCCCC---------CCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 540078980456888778895102----102234---------2567899999997045968999707846789999999
Q ss_pred HHCC--CCEEEEEECCCCCC
Q ss_conf 9789--80589980568997
Q gi|254780875|r 240 ESRK--LFLVNAFKDYGGND 257 (264)
Q Consensus 240 ~~~g--f~~v~~~kD~~g~~ 257 (264)
.++. |..++...|+...+
T Consensus 161 ~~~~q~f~~~~~~~dl~~~~ 180 (216)
T TIGR00091 161 SENDQLFVIISKNTDLNNSP 180 (216)
T ss_pred HHCCCCEEEEEECCCCCCCC
T ss_conf 65364124521002225577
No 89
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.82 E-value=1.3e-09 Score=83.79 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=92.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 235655531012332110124686056642142112331222233-3210013332220024442011000122222222
Q gi|254780875|r 76 PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQ 154 (264)
Q Consensus 76 peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~ 154 (264)
|||-.+....+.. ..+.++||+||+.|--++-+|...| +.+++.+|++++..+.|++|.++.|+++++.++.
T Consensus 45 ~e~g~~L~~L~~~-------~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 45 PETGALLRLLARL-------SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred HHHHHHHHHHHHH-------CCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 1489999999973-------498649996352379999999638889769997079899999999999759765289883
Q ss_pred -CCCCCCC----CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf -2222222----1002333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 155 -SDWFSSV----EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 155 -~d~~~~~----~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
+|..+.+ .+.||+|+ |+... ..|..+++.+.++|+|||.+++
T Consensus 118 ~gdal~~l~~~~~~~fDliF-----IDadK------------------------~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVF-----IDADK------------------------ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred CCCHHHHHHHCCCCCCCEEE-----EECCH------------------------HHCHHHHHHHHHHHCCCCEEEE
T ss_conf 57479999733478856899-----83784------------------------3599999999997378968998
No 90
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=4e-08 Score=73.92 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=95.2
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHH
Q ss_conf 1246860566421421123312222333210013332220024442011000122222222222222----210023332
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEGLFDVIV 169 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~~fD~Iv 169 (264)
...++.+|||+|+|-|-=+..++...++.+|+|+|+++.-++..++|+++.|+.. .+..+|.... .+++||.|+
T Consensus 242 ~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~--~v~~~d~~~~~~~~~~~~fD~IL 319 (428)
T PRK10901 242 APQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKA--TVKQGDGRYPSQWCGEQQFDRIL 319 (428)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCE--EEEECCCCCHHHHCCCCCCCEEE
T ss_conf 9888987987168876689999996458928999698889999999999759973--99977655723313445678799
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHCCCCCEEEE---EECCCHH-HHHHHHHHH
Q ss_conf 0113332100122111112357543321011232----1025689999985378878999---8176679-999999997
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGL----SHYRTIADGVSRHLNKDGLCSV---EIGYNQK-VDVVRIFES 241 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl----~~~~~ii~~~~~~L~~~G~l~l---Eig~~q~-~~v~~ll~~ 241 (264)
.-.|--..+. ...-|.+-+.-...-+ ..-++|++.+..+|+|||.++. -+....- +.|.++|++
T Consensus 320 lDaPCSg~G~--------lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~I~~FL~~ 391 (428)
T PRK10901 320 LDAPCSATGV--------IRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQIKAFLQR 391 (428)
T ss_pred ECCCCCCCEE--------ECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 7589888724--------44685421128999999999999999999998668898899998999957789999999985
Q ss_pred C-CCCEEE
Q ss_conf 8-980589
Q gi|254780875|r 242 R-KLFLVN 248 (264)
Q Consensus 242 ~-gf~~v~ 248 (264)
+ .|..++
T Consensus 392 ~~d~~l~~ 399 (428)
T PRK10901 392 TPDAELCE 399 (428)
T ss_pred CCCCEECC
T ss_conf 99978606
No 91
>KOG3420 consensus
Probab=98.68 E-value=2e-09 Score=82.46 Aligned_cols=79 Identities=34% Similarity=0.451 Sum_probs=64.4
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHC
Q ss_conf 12468605664214211233122223332100133322200244420110001222222222222222--1002333201
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV--EGLFDVIVSN 171 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~--~~~fD~IvsN 171 (264)
..-.+.+++|+|||.|.++++ .....+..|.|+||+++|++++..|++...++ +++.++|.++.. .+.||..|-|
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a-~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420 45 GDIEGKKLKDLGCGCGMLSIA-FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred CCCCCCCHHHHCCCHHHHHHH-HHCCCCCEEEEEECCHHHHHHHHHCHHHHHHH--HHEEEEECCCHHCCCCEEEEEEEC
T ss_conf 120474622524761156777-50578733786405889999986166875233--421222215511058767667866
Q ss_pred CHHH
Q ss_conf 1333
Q gi|254780875|r 172 PPYI 175 (264)
Q Consensus 172 PPYI 175 (264)
||+=
T Consensus 122 ppFG 125 (185)
T KOG3420 122 PPFG 125 (185)
T ss_pred CCCC
T ss_conf 8987
No 92
>KOG1499 consensus
Probab=98.68 E-value=3.9e-09 Score=80.55 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=77.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CC-CHHHHHHHCCH
Q ss_conf 46860566421421123312222333210013332220024442011000122222222222222-21-00233320113
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-VE-GLFDVIVSNPP 173 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-~~-~~fD~IvsNPP 173 (264)
-+...|||+|||||.+++..|+.- ..+|+|+|-|.-| +.|++.+..|++++.+++++|.+.+- ++ ++.|+|||
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvS--- 133 (346)
T KOG1499 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVS--- 133 (346)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHC-CCEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEEEEECCCCCEEEEEE---
T ss_conf 079789975788128899988737-5339999626899-99999998568660599950305787647554029963---
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 332100122111112357543321011232102568999998537887899
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS 224 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~ 224 (264)
+|-. . -+-||-+ +..++-.-.++|+|||.++
T Consensus 134 -----EWMG--y-~Ll~EsM------------ldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499 134 -----EWMG--Y-FLLYESM------------LDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -----HHHH--H-HHHHHHH------------HHHHHHHHHHCCCCCCEEC
T ss_conf -----0124--7-8777656------------6645533330047795576
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.67 E-value=1.6e-08 Score=76.58 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=90.5
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 23767750462051223565553101233211012468605664214211233122223332100133322200244420
Q gi|254780875|r 61 YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 61 ~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N 140 (264)
-+..+.+..|-.|..|-+.-..-..+ +-++.-+|||+|||||-.+-.+++.. .+|+++|+++.-.+.|++|
T Consensus 49 ~D~~ipi~~g~~is~P~~~A~ml~~L-------~l~~~~~VLeIGtGsGY~tAlLa~l~--~~V~siE~~~~l~~~a~~~ 119 (213)
T PRK00312 49 ENRALPIGCGQTISQPYMVARMTELL-------ELKPGDRVLEIGTGSGYQAAVLAHLV--ERVFSVERIKTLQWQAKRR 119 (213)
T ss_pred CCCCCCCCCCCEECHHHHHHHHHHHH-------CCCCCCEEEEECCCCCHHHHHHHHHC--CCEEEEECCHHHHHHHHHH
T ss_conf 37997688998976799999999984-------36899759996598609999999862--9289994289999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 1100012222222222222221--00233320113332100122111112357543321011232102568999998537
Q gi|254780875|r 141 AVTNGVSERFDTLQSDWFSSVE--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLN 218 (264)
Q Consensus 141 ~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~ 218 (264)
...+++.+ +.+.++|.....+ ++||.|+.+-. ... +=....+.|+
T Consensus 120 l~~~~~~n-v~~~~gdg~~g~~~~~pfD~Iii~~a------~~~--------------------------~P~~l~~qL~ 166 (213)
T PRK00312 120 LKQLGLHN-VSVRHGDGWKGWPAYAPFDRILVTAA------APE--------------------------IPRALLDQLA 166 (213)
T ss_pred HHHCCCCC-EEEEECCCCCCCCCCCCCCEEEEEEC------CHH--------------------------HHHHHHHHCC
T ss_conf 99849987-69996887667876697248999843------412--------------------------2599998453
Q ss_pred CCCEEEEEECCC
Q ss_conf 887899981766
Q gi|254780875|r 219 KDGLCSVEIGYN 230 (264)
Q Consensus 219 ~~G~l~lEig~~ 230 (264)
+||.+++-+|..
T Consensus 167 ~gGrLV~Pig~~ 178 (213)
T PRK00312 167 EGGILVAPIGPG 178 (213)
T ss_pred CCCEEEEEECCC
T ss_conf 297999998049
No 94
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.67 E-value=4e-09 Score=80.52 Aligned_cols=101 Identities=22% Similarity=0.314 Sum_probs=81.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf 237677504620512235655531012332110124686056642142112331222233321-0013332220024442
Q gi|254780875|r 61 YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFK-GVGVDISCKALEIAKS 139 (264)
Q Consensus 61 ~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~-v~~~Dis~~al~~A~~ 139 (264)
||..|.+|++| ++.+++. .+..++..|||+|+|.|+++..|++..+ + ++|+|+++..++..++
T Consensus 7 lGQnFL~D~~~----------~~~Iv~~----~~~~~~~~vlEIGPG~G~LT~~Ll~~~~--~~v~aiEiD~~l~~~L~~ 70 (277)
T TIGR00755 7 LGQNFLIDESV----------IQKIVEA----ANVLENDVVLEIGPGLGALTEPLLKRAK--KLVTAIEIDPRLAEILRK 70 (277)
T ss_pred CCCCEEECHHH----------HHHHHHH----HCCCCCCEEEEECCCCHHHHHHHHHHCC--CEEEEEEECHHHHHHHHH
T ss_conf 27602408789----------9999997----4378997799973882078999998259--848999726789999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC---HHH-----HHHHCCHH-HHHH
Q ss_conf 011000122222222222222210---023-----33201133-3210
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSVEG---LFD-----VIVSNPPY-IESV 178 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~~~---~fD-----~IvsNPPY-I~~~ 178 (264)
.... ....++.++++|.+..--+ .|+ .||||-|| |++-
T Consensus 71 ~~~~-~~~~~~~~i~~Dalk~~~~~~~~~~~~~~~~vv~NLPY~Issp 117 (277)
T TIGR00755 71 LLSE-KLYENLEVIEGDALKVDLNSLEDFPKEDKLKVVSNLPYNISSP 117 (277)
T ss_pred HCCC-CCCCCEEEEECCEEEECCCHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 2154-3324257871444541232043316789857985077432489
No 95
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.67 E-value=9.5e-09 Score=78.02 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=88.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHC
Q ss_conf 3767750462051223565553101233211012468605664214211233122223-332100133322200244420
Q gi|254780875|r 62 NVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 62 ~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N 140 (264)
+..+-+..+--|--|-+.-..-..+ +-++.-+|||+|||||-.+-.+|+.. +..+|+++|+++.-++.|++|
T Consensus 48 D~~lpig~g~tis~P~~~a~ml~~L-------~l~~~~~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~ 120 (214)
T PRK13942 48 DTPLEIGYGQTISAIHMVAIMCELL-------DLDEGQKVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKN 120 (214)
T ss_pred CCCCCCCCCCEECHHHHHHHHHHHH-------CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf 8986789997887499999999972-------799999799967995299999999747678579997179999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 1100012222222222222221--00233320113332100122111112357543321011232102568999998537
Q gi|254780875|r 141 AVTNGVSERFDTLQSDWFSSVE--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLN 218 (264)
Q Consensus 141 ~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~ 218 (264)
...+++. ++.+.++|.....+ .+||.|+.. ...... | ....+.|+
T Consensus 121 l~~~~~~-nv~~~~gdg~~G~~~~apfD~Iiv~------aa~~~i--------P------------------~~l~~qL~ 167 (214)
T PRK13942 121 LKKLGYE-NVEVILGDGTKGYEENAPYDRIYVT------AAGPDI--------P------------------KPLLEQLK 167 (214)
T ss_pred HHHHCCC-CEEEEECCCCCCCCCCCCCCEEEEE------ECCCCC--------C------------------HHHHHHCC
T ss_conf 9863768-7589856756678445981279998------517657--------8------------------99999628
Q ss_pred CCCEEEEEECC
Q ss_conf 88789998176
Q gi|254780875|r 219 KDGLCSVEIGY 229 (264)
Q Consensus 219 ~~G~l~lEig~ 229 (264)
+||.+++-+|.
T Consensus 168 ~gGrLV~Pvg~ 178 (214)
T PRK13942 168 DGGIMVIPVGS 178 (214)
T ss_pred CCCEEEEEECC
T ss_conf 89589999889
No 96
>KOG2915 consensus
Probab=98.66 E-value=4.4e-08 Score=73.64 Aligned_cols=177 Identities=17% Similarity=0.174 Sum_probs=129.0
Q ss_pred HHCCCCHHHHCCCEEEEEEEEEEECC--CCCHHHHHHHHHHHH-----------CCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 97498376853631442376775046--205122356555310-----------12332110124686056642142112
Q gi|254780875|r 45 SLKHESIHRILGWRDFYNVRLTLSSD--TFEPRPETELLVDSA-----------LAFSLPRIEKRDVVRILDLGTGTGAV 111 (264)
Q Consensus 45 r~~g~Pl~YIlg~~~F~~~~f~v~~~--vLIPRpeTE~lv~~~-----------l~~~~~~~~~~~~~~vLDlG~GsG~i 111 (264)
|----|..-|+|+ +||..+..++| |-+=||-.|+|.-.. ++++...++-.+..+|++-|||||.+
T Consensus 42 ~yGa~~h~~iIGK--~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSl 119 (314)
T KOG2915 42 RYGALPHSDIIGK--PYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSL 119 (314)
T ss_pred CCCCCCHHHEECC--CCCCEEEECCCCEEEEECCCHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCEEEECCCCCCHH
T ss_conf 3454110111157--75534653378479994588688654356762477455699999986579997898637886348
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHCCHHHHHHCCCCCCCC
Q ss_conf 33122223-33210013332220024442011000122222222222222----21002333201133321001221111
Q gi|254780875|r 112 CLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEGLFDVIVSNPPYIESVIVDCLGLE 186 (264)
Q Consensus 112 ~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~~fD~IvsNPPYI~~~~~~~l~~~ 186 (264)
+.++++.. |.-+++..|....-.+-|.+-.+.+++.+++.+.+-|+-.. -..++|.|+-.-|
T Consensus 120 ShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlP------------- 186 (314)
T KOG2915 120 SHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFLDLP------------- 186 (314)
T ss_pred HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCC-------------
T ss_conf 8999986376762699983287899999999973778634899964156773531342356997589-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC--CHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 1235754332101123210256899999853788789998176--6799999999978980589980568
Q gi|254780875|r 187 VRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY--NQKVDVVRIFESRKLFLVNAFKDYG 254 (264)
Q Consensus 187 v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~--~q~~~v~~ll~~~gf~~v~~~kD~~ 254 (264)
-|..| +..+.+.|+.+|.-++-+.+ .|.+...+.+.+.||..+++..++.
T Consensus 187 ----aPw~A--------------iPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915 187 ----APWEA--------------IPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred ----CHHHH--------------HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEH
T ss_conf ----80552--------------23367775406825996217899999999999867982379987603
No 97
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.66 E-value=2e-08 Score=75.87 Aligned_cols=134 Identities=22% Similarity=0.314 Sum_probs=96.3
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCC----CCHHHHHH
Q ss_conf 2468605664214211233122223332100133322200244420110001-222222222222222----10023332
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGV-SERFDTLQSDWFSSV----EGLFDVIV 169 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~-~~~i~~~~~d~~~~~----~~~fD~Iv 169 (264)
.+...+|||.|+|-|--++..+.+ ....|+.+++++.-+++|+.|--..++ +.+++++.||..+.+ +..||.|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCEEE
T ss_conf 366878443246713899999875-8748999960877277413588984202003178616599997418865301686
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC--------CCHHHHHHHHHHH
Q ss_conf 01133321001221111123575433210112321025689999985378878999817--------6679999999997
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG--------YNQKVDVVRIFES 241 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig--------~~q~~~v~~ll~~ 241 (264)
-.||=.+.. |.-..+.||+ +..+.|++||.++-=.| -+-...|++.|++
T Consensus 211 HDPPRfS~A-------------------geLYseefY~----El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 211 HDPPRFSLA-------------------GELYSEEFYR----ELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred ECCCCCCHH-------------------HHHHHHHHHH----HHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 079733102-------------------3576899999----99997076980799727987402467714789999986
Q ss_pred CCCCEEEEEEC
Q ss_conf 89805899805
Q gi|254780875|r 242 RKLFLVNAFKD 252 (264)
Q Consensus 242 ~gf~~v~~~kD 252 (264)
.||..++..+-
T Consensus 268 vGF~~v~~~~~ 278 (287)
T COG2521 268 VGFEVVKKVRE 278 (287)
T ss_pred CCCEEEEEEHH
T ss_conf 17344432321
No 98
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.66 E-value=3.6e-08 Score=74.21 Aligned_cols=122 Identities=25% Similarity=0.350 Sum_probs=81.9
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC---CCC-CCCCHHHHHH
Q ss_conf 124686056642142112331222233321001333222002444201100012222222222---222-2210023332
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSD---WFS-SVEGLFDVIV 169 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d---~~~-~~~~~fD~Iv 169 (264)
......++||+|||||-.+..|-.. ....+|+|||..+++.|.+.- +-+.. .+++ +.+ ..+.+||+|+
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg----~YD~L--~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKG----LYDTL--YVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHH--HHHCCCCCHHHHHHHHHHHCC----CHHHH--HHHHHHHHHHHCCCCCCCCHH
T ss_conf 5776202344266767662767888--865127762699999988624----15788--898999875522677643012
Q ss_pred HC--CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE-----------CCCH----H
Q ss_conf 01--13332100122111112357543321011232102568999998537887899981-----------7667----9
Q gi|254780875|r 170 SN--PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI-----------GYNQ----K 232 (264)
Q Consensus 170 sN--PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi-----------g~~q----~ 232 (264)
+- -||+- ....++..+..+|+|+|.+.|-+ ++.| .
T Consensus 194 AaDVl~YlG----------------------------~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~ 245 (287)
T COG4976 194 AADVLPYLG----------------------------ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHS 245 (287)
T ss_pred HHHHHHHHC----------------------------CHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCHHHHHCCC
T ss_conf 456788640----------------------------0346899999855898648987231677787321646532252
Q ss_pred -HHHHHHHHHCCCCEEEEEE
Q ss_conf -9999999978980589980
Q gi|254780875|r 233 -VDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 233 -~~v~~ll~~~gf~~v~~~k 251 (264)
..|...+...||..+++.+
T Consensus 246 ~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 246 ESYVRALLAASGLEVIAIED 265 (287)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 28999999745962787424
No 99
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=98.63 E-value=4.8e-09 Score=79.95 Aligned_cols=102 Identities=21% Similarity=0.325 Sum_probs=79.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 23767750462051223565553101233211012468605664214211233122223332100133322200244420
Q gi|254780875|r 61 YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 61 ~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N 140 (264)
+|..|.+|+++ ++.+++.. +..+.-.|||+|.|.|++.-.|+.. ..+|+++|+++..+..-++.
T Consensus 16 lGQnFL~D~~i----------~~~Iv~~a----~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~ 79 (296)
T PTZ00338 16 FGQHILKNPLV----------LDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKR 79 (296)
T ss_pred CCCCCCCCHHH----------HHHHHHHC----CCCCCCEEEEECCCCHHHHHHHHHC--CCCEEEEEECHHHHHHHHHH
T ss_conf 76220589899----------99999960----7898995799668542999999835--89179999488999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHH-HHHH
Q ss_conf 1100012222222222222221002333201133-3210
Q gi|254780875|r 141 AVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPY-IESV 178 (264)
Q Consensus 141 ~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPY-I~~~ 178 (264)
....+..++++++++|.+..--..||.+|+|-|| |.+.
T Consensus 80 ~~~~~~~~n~~ii~~D~Lk~d~~~~~~vVaNLPY~ISSp 118 (296)
T PTZ00338 80 FQNSPLASKLQVIEGDALKTEFPYFDVCVANVPYQISSP 118 (296)
T ss_pred HHCCCCCCCCEEECCHHHHCCCCCCCEEEECCCCHHHHH
T ss_conf 851445667357705053185641144663587044799
No 100
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.62 E-value=2e-08 Score=75.89 Aligned_cols=118 Identities=26% Similarity=0.418 Sum_probs=81.1
Q ss_pred EEEEEE-EEEECCCCCH----HHHHHH-HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 442376-7750462051----223565-5531012332110124686056642142112331222233321001333222
Q gi|254780875|r 59 DFYNVR-LTLSSDTFEP----RPETEL-LVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCK 132 (264)
Q Consensus 59 ~F~~~~-f~v~~~vLIP----RpeTE~-lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~ 132 (264)
.||+.+ -.+.+|-|+| |.+--. |.|. |...... ...++.++||+|+|.-||==.+..+-=++..+|.||++.
T Consensus 36 ~fY~v~~wdiPeg~LCPpvPgRAdYih~laDL-L~s~~g~-~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~ 113 (292)
T COG3129 36 HFYAVRYWDIPEGFLCPPVPGRADYIHHLADL-LASTSGQ-IPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQ 113 (292)
T ss_pred HHCCEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHHCCCC-CCCCCEEEEEECCCCCCCCCCCCCEEECCEEECCCCCHH
T ss_conf 74360475178877389999736799999999-8743898-776764788504576420021332121220015746877
Q ss_pred CHHHHHHCCCCC-CCCCCCCCCCC-C---CCCCC---CCHHHHHHHCCHHHHHH
Q ss_conf 002444201100-01222222222-2---22222---10023332011333210
Q gi|254780875|r 133 ALEIAKSNAVTN-GVSERFDTLQS-D---WFSSV---EGLFDVIVSNPPYIESV 178 (264)
Q Consensus 133 al~~A~~N~~~~-~~~~~i~~~~~-d---~~~~~---~~~fD~IvsNPPYI~~~ 178 (264)
+++.|+.+...| +++..+++... | +|..+ .+.||...||||+-.+.
T Consensus 114 sl~sAk~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 114 SLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred HHHHHHHHHHCCCCHHHHEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHH
T ss_conf 888889998709041533367752685434165103443330575189830209
No 101
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=98.61 E-value=9.2e-08 Score=71.51 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=98.8
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCHHH
Q ss_conf 6860566421421123312222333210013332220024442011000122222222222222-210023332011333
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-VEGLFDVIVSNPPYI 175 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-~~~~fD~IvsNPPYI 175 (264)
...+++|+|||.|-=|+-+|-.+|+.+++.+|-+.+-+..-+.=+...+++ ++++++....+. ...+||+|+|
T Consensus 48 ~~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~-nv~v~~~R~E~~~~~~~~D~v~a----- 121 (184)
T pfam02527 48 IRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLE-NVTIVHARAEEYQHEEQYDVITS----- 121 (184)
T ss_pred CCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCC-CEEEEECCHHHCCCCCCCCEEEE-----
T ss_conf 798688347988846799999677855999928289999999999985999-76999560441464467878998-----
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHH---HHHHHHCCCCEEEEEEC
Q ss_conf 210012211111235754332101123210256899999853788789998176679999---99999789805899805
Q gi|254780875|r 176 ESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDV---VRIFESRKLFLVNAFKD 252 (264)
Q Consensus 176 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v---~~ll~~~gf~~v~~~kD 252 (264)
+.+ .-+..+++.+..+++++|.+++==|....+++ .+.++..|...+ ..++
T Consensus 122 ------------RA~-------------a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~l~~~~~-~v~~ 175 (184)
T pfam02527 122 ------------RAV-------------ASLNELTEWALPLLKPGGYFLAYKGKQAEDEIEELDKACQKLGVEVL-FVPS 175 (184)
T ss_pred ------------CHH-------------CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEE-ECCC
T ss_conf ------------100-------------57999999999863889899998899989999987877998297797-6489
Q ss_pred CCCCCEEEE
Q ss_conf 689975999
Q gi|254780875|r 253 YGGNDRVLL 261 (264)
Q Consensus 253 ~~g~~R~vi 261 (264)
+.+.+|.++
T Consensus 176 ~~~~~rh~~ 184 (184)
T pfam02527 176 LGAGDRHLV 184 (184)
T ss_pred CCCCCCCCC
T ss_conf 888778779
No 102
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family; InterPro: IPR014329 Members of this entry are the m6-adenine DNA methyltransferase protein, or a fusion protein that also carries m5 cytosine methyltransferase activity of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A type II restriction endonuclease always accompanies a methyltransferase of this type from Alw26I/Eco31I/Esp3I(IPR014328 from INTERPRO) and by an adenine-specific modification methyltransferase. Members of this are unusual in that the regions of similarity to homologues outside this family are circularly permuted..
Probab=98.60 E-value=4.6e-08 Score=73.50 Aligned_cols=178 Identities=20% Similarity=0.230 Sum_probs=105.8
Q ss_pred HHHHHHHHCCCCCCCCC-CCCCCCEEEEECCCCCCCCCCCCCCCC------------CCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 56555310123321101-246860566421421123312222333------------21001333222002444201100
Q gi|254780875|r 78 TELLVDSALAFSLPRIE-KRDVVRILDLGTGTGAVCLALLKESPF------------FKGVGVDISCKALEIAKSNAVTN 144 (264)
Q Consensus 78 TE~lv~~~l~~~~~~~~-~~~~~~vLDlG~GsG~i~i~la~~~~~------------~~v~~~Dis~~al~~A~~N~~~~ 144 (264)
++.||..++........ +-...+++|-|||+|.+..++.+.++. +.+.-+||++.+|..|..+....
T Consensus 13 ~~~m~~~l~~~~~~~~~~nI~~~~~~DP~~G~G~Li~~~L~~~~~i~~~~~~i~~~~~~~~~~Di~~~~L~~~~~~~~~~ 92 (603)
T TIGR02987 13 AKEMVKELVKEIDKNDKSNIEKLKIIDPCCGDGRLIALLLKKFEEINLFKEQIEKVELNIYLADIDKTLLERASKLLSEL 92 (603)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99999999875176530004154533575276499999999866430340232331110002314447999999988787
Q ss_pred C-------CCCCCCCCCCCCCCCC---CCH-----------------HHHHHHCCHHH----HHHCCCCCCCC-------
Q ss_conf 0-------1222222222222222---100-----------------23332011333----21001221111-------
Q gi|254780875|r 145 G-------VSERFDTLQSDWFSSV---EGL-----------------FDVIVSNPPYI----ESVIVDCLGLE------- 186 (264)
Q Consensus 145 ~-------~~~~i~~~~~d~~~~~---~~~-----------------fD~IvsNPPYI----~~~~~~~l~~~------- 186 (264)
+ +.......++|.+... .++ ||+||.||||- ...+...+++.
T Consensus 93 ~k~~F~~~~~~~~~~~~~~~~~~~~~~~~~EYI~~~~~F~~EV~keGFD~~ItNPPy~~~K~dk~~~~n~~~~~~~~~~~ 172 (603)
T TIGR02987 93 AKLLFALEISIILTNSLSDVFLLIEEYKEKEYIKLEDVFGDEVKKEGFDIVITNPPYKNLKPDKKELSNLETLEKESYKD 172 (603)
T ss_pred HHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66654237751001102344454554201022254501553200157417997788855444510001468255444537
Q ss_pred --------C-CCCCCCC-----CCCCCCCCCCCHHHHHHH-HHHHCCCCCEEEEEE-----CCCHHHHHHHHHHHC-CCC
Q ss_conf --------1-2357543-----321011232102568999-998537887899981-----766799999999978-980
Q gi|254780875|r 187 --------V-RDFDPRI-----SLDGGIDGLSHYRTIADG-VSRHLNKDGLCSVEI-----GYNQKVDVVRIFESR-KLF 245 (264)
Q Consensus 187 --------v-~~~EP~~-----AL~gg~dGl~~~~~ii~~-~~~~L~~~G~l~lEi-----g~~q~~~v~~ll~~~-gf~ 245 (264)
+ +.|+-+. |=.|++.|..-|.++... +.++.+++|.+.+-+ +..|+..+++.+-.+ +-.
T Consensus 173 ~~~~~~~~~~~~~~~S~p~kKf~g~g~~~G~~~ysr~~~~~~~~~~~~~G~v~i~~P~S~l~D~~~~~LR~~~~~n~~I~ 252 (603)
T TIGR02987 173 SLKELDDFLSRVFPYSDPRKKFAGVGTEKGILNYSRVGEEISLELVKKNGLVSIVIPSSILADKTSENLRKYILENSNIN 252 (603)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 76412222333024210034433678667606799999999998734598799963630105234678889876146423
Q ss_pred EEEEEECCCC
Q ss_conf 5899805689
Q gi|254780875|r 246 LVNAFKDYGG 255 (264)
Q Consensus 246 ~v~~~kD~~g 255 (264)
.|..++--+|
T Consensus 253 ~I~yf~e~ak 262 (603)
T TIGR02987 253 SINYFPEEAK 262 (603)
T ss_pred CCCCCCCCCC
T ss_conf 1011012355
No 103
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.59 E-value=6.5e-09 Score=79.11 Aligned_cols=76 Identities=29% Similarity=0.384 Sum_probs=59.3
Q ss_pred CCEEEEECCCCCCCCCCCC---CC-C--------------------------------------CCCCCCCCCCCCCHHH
Q ss_conf 6056642142112331222---23-3--------------------------------------3210013332220024
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLK---ES-P--------------------------------------FFKGVGVDISCKALEI 136 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~---~~-~--------------------------------------~~~v~~~Dis~~al~~ 136 (264)
..++|-.||||-|.|--|. .. | ..+++|.|+++.|+..
T Consensus 196 ~pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~W~~~d~~lW~~l~~eA~~r~~~~~~~~~~~i~G~D~D~~ai~~ 275 (716)
T PRK11783 196 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSAWLGHDEALWQELLEEAQERARAGLAECSPKFYGSDIDPRVIQA 275 (716)
T ss_pred CEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
T ss_conf 81344666843789999999847798865454564115688999999999999986542234688718999599899999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHCCHH
Q ss_conf 44201100012222222222222221----002333201133
Q gi|254780875|r 137 AKSNAVTNGVSERFDTLQSDWFSSVE----GLFDVIVSNPPY 174 (264)
Q Consensus 137 A~~N~~~~~~~~~i~~~~~d~~~~~~----~~fD~IvsNPPY 174 (264)
|+.|+++-|+++.|.|.+.|+.+..+ ...-+|||||||
T Consensus 276 Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPY 317 (716)
T PRK11783 276 ARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPY 317 (716)
T ss_pred HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCH
T ss_conf 999999819988629995678985798777898289967852
No 104
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.58 E-value=3.7e-08 Score=74.13 Aligned_cols=128 Identities=24% Similarity=0.299 Sum_probs=88.9
Q ss_pred EEEEEEEECCCC------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 237677504620------51223565553101233211012468605664214211233122223332100133322200
Q gi|254780875|r 61 YNVRLTLSSDTF------EPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKAL 134 (264)
Q Consensus 61 ~~~~f~v~~~vL------IPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al 134 (264)
+-++|+|.|.-. .-++-+|.+ +++ ..-++.++||+|||+|-=++.|++. +..|+|+|+|+.++
T Consensus 89 c~L~FyC~pedYf~KKY~lt~tHSev~-~a~--------~~i~pgkaLDLGCG~GRNsLyLa~~--GfdVTA~D~N~~sl 157 (289)
T PRK12335 89 CQLSFYCKPEDYFHKKYNLTPTHSEVL-EAA--------KTVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQASL 157 (289)
T ss_pred EEEEEECCHHHHHHHHCCCCCCCHHHH-HHH--------HHCCCCCEEEECCCCCCCHHHHHHC--CCCEEEEECCHHHH
T ss_conf 778886178887786338998619999-987--------5268874666047888227889757--98425886899999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 2444201100012222222222222-221002333201133321001221111123575433210112321025689999
Q gi|254780875|r 135 EIAKSNAVTNGVSERFDTLQSDWFS-SVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV 213 (264)
Q Consensus 135 ~~A~~N~~~~~~~~~i~~~~~d~~~-~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~ 213 (264)
+-.+.=+..-++. +.....|+-. .+++.||+|+| +-.+.-++++ -+-.||.+.
T Consensus 158 ~~L~~ia~~E~L~--i~~~~yDIN~a~l~~~YDfI~S------TVV~mFL~~~------------------~ip~iI~nM 211 (289)
T PRK12335 158 ENLQQIAEKENLN--IRAGSYDINSASLQEEYDFILS------TVVLMFLNPE------------------RIPDIIKNM 211 (289)
T ss_pred HHHHHHHHHCCCC--CCCEEECCCCCCCCCCCCEEEE------EEEEEEECHH------------------HHHHHHHHH
T ss_conf 9999999971988--7725751666666777678999------6788642877------------------869999999
Q ss_pred HHHCCCCCEEEE
Q ss_conf 985378878999
Q gi|254780875|r 214 SRHLNKDGLCSV 225 (264)
Q Consensus 214 ~~~L~~~G~l~l 225 (264)
..+-+|||+=++
T Consensus 212 Q~~T~~gGyNlI 223 (289)
T PRK12335 212 QEHTNPGGYNLI 223 (289)
T ss_pred HHHCCCCCEEEE
T ss_conf 984479986899
No 105
>PRK04457 spermidine synthase; Provisional
Probab=98.58 E-value=3e-07 Score=68.17 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=96.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCC
Q ss_conf 468605664214211233122223332100133322200244420110001222222222222222---10023332011
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNP 172 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNP 172 (264)
..+.+||-||=|.|.++-.+.+.+|.+++++|||++.-+++|++-...-.-+.|++++++|-.+++ +++||+|+..
T Consensus 65 p~Pk~vl~iGLGgGsl~k~~~~~~P~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~~~Dg~~fv~~~~~~~DvI~vD- 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSFAKFIDTYLPDTRQTAVEINPQVIAVARNHFELPFEDEKFEIIEADGAEYIKVFPASTDVILVD- 143 (262)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEE-
T ss_conf 9978699992570199999998398675899987889999999865799999726999553899985486777889996-
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC---CCHHHHHHHHHHHCCCCEEEE
Q ss_conf 33321001221111123575433210112321025689999985378878999817---667999999999789805899
Q gi|254780875|r 173 PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG---YNQKVDVVRIFESRKLFLVNA 249 (264)
Q Consensus 173 PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig---~~q~~~v~~ll~~~gf~~v~~ 249 (264)
.-+-..+++. | +-+.+...+...|+++|++.+-.- ......+..+....+-....+
T Consensus 144 ----~fd~~g~~~~---------L--------~t~~Fy~~c~~~L~~~Gvlv~Nl~~~~~~~~~~l~~i~~~F~~~~~~~ 202 (262)
T PRK04457 144 ----GFDGEQIVDA---------L--------VTQPFFRDCRNALSSDGVFVTNLWSGDKRYQRYIERLLSVFEGRVLEL 202 (262)
T ss_pred ----CCCCCCCCCC---------C--------CCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEEEE
T ss_conf ----8898888600---------0--------829999999986498939999868899865999999999728739997
Q ss_pred EECCCCCCEEEEEEC
Q ss_conf 805689975999979
Q gi|254780875|r 250 FKDYGGNDRVLLFCR 264 (264)
Q Consensus 250 ~kD~~g~~R~vi~~r 264 (264)
.-.-.| +.++++.|
T Consensus 203 ~~~~~G-N~Iv~A~k 216 (262)
T PRK04457 203 PAESHG-NVAVFAFQ 216 (262)
T ss_pred ECCCCC-EEEEEEEC
T ss_conf 258998-08999978
No 106
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.57 E-value=2.5e-08 Score=75.29 Aligned_cols=125 Identities=22% Similarity=0.276 Sum_probs=81.5
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCC----CCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHCCCC-------
Q ss_conf 5553101233211012468605664214211----233122223-----332100133322200244420110-------
Q gi|254780875|r 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTGA----VCLALLKES-----PFFKGVGVDISCKALEIAKSNAVT------- 143 (264)
Q Consensus 80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~----i~i~la~~~-----~~~~v~~~Dis~~al~~A~~N~~~------- 143 (264)
.+.+.++-..........+++|.-.||.||- |++.+.... ++.+++|+|||+.+++.|++-.-.
T Consensus 82 ~l~~~ilP~l~~~~~~~~~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~Y~~~~~~~~ 161 (264)
T smart00138 82 ALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDL 161 (264)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCHHHHHCC
T ss_conf 99999989999846779974899777888820899999999974334898569999839999999998689898998469
Q ss_pred -------------------CCCCCCCCCCCCCCCCCC--CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------------------001222222222222222--10023332011333210012211111235754332101123
Q gi|254780875|r 144 -------------------NGVSERFDTLQSDWFSSV--EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDG 202 (264)
Q Consensus 144 -------------------~~~~~~i~~~~~d~~~~~--~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dG 202 (264)
-.+..+|.|.+.|+++.. .++||+|+| .+.+-..+++.
T Consensus 162 ~~~~~~kyF~~~~~~~~v~~~lr~~v~F~~~NL~~~~~~~~~fDlI~C------RNVlIYF~~~~--------------- 220 (264)
T smart00138 162 PKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFC------RNVLIYFDEPT--------------- 220 (264)
T ss_pred CHHHHHHHCCCCCCEEEECHHHHCCCCEECCCCCCCCCCCCCCEEEEE------CCCEEECCHHH---------------
T ss_conf 999999880656988999889985091832789999877788419997------63235459999---------------
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 21025689999985378878999817
Q gi|254780875|r 203 LSHYRTIADGVSRHLNKDGLCSVEIG 228 (264)
Q Consensus 203 l~~~~~ii~~~~~~L~~~G~l~lEig 228 (264)
-++++......|+|||+|++-+.
T Consensus 221 ---~~~vl~~l~~~L~pgG~L~lG~s 243 (264)
T smart00138 221 ---QRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEECC
T ss_conf ---99999999998389939998276
No 107
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=98.56 E-value=1.7e-08 Score=76.28 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 22356555310123321101246860566421421123312222333210013332220024442011000122222222
Q gi|254780875|r 75 RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQ 154 (264)
Q Consensus 75 RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~ 154 (264)
|+|=.++.+++ .++.||||+|||.|.+.-. +++.++..++|+|++++++..|.++ | +.+++
T Consensus 1 R~D~~iI~~~I----------~~~srVLDlGCG~G~ll~~-L~~~k~v~~~GvEid~~~v~~a~~k----g----~~Vi~ 61 (193)
T pfam07021 1 RADFRYIARLI----------PPGSRVLDLGCGDGSLLYL-LQEEKQVDGRGIELDAAGVAECVAK----G----LSVIQ 61 (193)
T ss_pred CCHHHHHHHHC----------CCCCEEEEECCCCCHHHHH-HHHCCCCCEEEECCCHHHHHHHHHC----C----CCEEC
T ss_conf 94689999865----------8969899836889899999-9876698769833899999999864----7----95450
Q ss_pred CCCCCC----CCCHHHHHHHC
Q ss_conf 222222----21002333201
Q gi|254780875|r 155 SDWFSS----VEGLFDVIVSN 171 (264)
Q Consensus 155 ~d~~~~----~~~~fD~IvsN 171 (264)
+|+.+. .++.||+||++
T Consensus 62 ~D~d~~l~~f~d~sFD~VIls 82 (193)
T pfam07021 62 GDADKGLEHFPDKSFDYVILS 82 (193)
T ss_pred CCHHHCHHHCCCCCCCEEEHH
T ss_conf 774459745776780378698
No 108
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.56 E-value=2.7e-07 Score=68.48 Aligned_cols=142 Identities=21% Similarity=0.296 Sum_probs=97.1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC-----CCCCCCCCCCC--CCCCHHHHHHH
Q ss_conf 860566421421123312222333210013332220024442011000122-----22222222222--22100233320
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSE-----RFDTLQSDWFS--SVEGLFDVIVS 170 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~-----~i~~~~~d~~~--~~~~~fD~Ivs 170 (264)
..+|||+|+|||--++.+|..+|+..-.-+|+++....--.......++.+ .+.+....|-- ...+.||.|+|
T Consensus 26 ~~~VLEIaSGTGQHav~fA~~lP~l~WqPSD~~~~~~~sI~aw~~~~~l~Nl~~P~~LDv~~~~w~~~~~~~~~~dai~~ 105 (201)
T pfam06080 26 TERVLEIASGTGQHAVFFAPLLPNLTWQPSDPDPNLRGSIAAWADQQGLRNLRPPLHLDVTRPPWPVEAPAPASYDAIFS 105 (201)
T ss_pred CCCEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 88579976872699999998789988515888877899999998743777668873763278998755566766002330
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-------------------------
Q ss_conf 1133321001221111123575433210112321025689999985378878999-------------------------
Q gi|254780875|r 171 NPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV------------------------- 225 (264)
Q Consensus 171 NPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l------------------------- 225 (264)
.+-+|-++-+ ..+.+++.+.++|+++|.+++
T Consensus 106 ------iN~lHI~pw~------------------~~~~lf~ga~~~L~~gG~l~lYGPF~~~G~~ts~SN~~FD~~Lr~~ 161 (201)
T pfam06080 106 ------INMIHISPWS------------------CVEGLFRGAGRLLPPGGVLYIYGPYNQDGELTSDSNRDFDRSLRQR 161 (201)
T ss_pred ------HHHHHHCCHH------------------HHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHHHHHHHHC
T ss_conf ------0257737899------------------9999999999985158826874650259976882589999999850
Q ss_pred --EECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf --817667999999999789805899805689975999979
Q gi|254780875|r 226 --EIGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 226 --Eig~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
+.|..-.+++.+++.+.|+...+.+ ++=-+++++|++|
T Consensus 162 dp~~GiRD~e~v~~lA~~~GL~l~~~~-~MPANN~~lvf~k 201 (201)
T pfam06080 162 DPEWGIRDIEDVIALAAAQGLQLVKDV-DMPANNRCLIFQK 201 (201)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCC-CCCCCCEEEEEEC
T ss_conf 963378389999999998799768665-0699884888869
No 109
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=98.54 E-value=4.7e-08 Score=73.42 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=88.8
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHCCH
Q ss_conf 2468605664214211233122223332100133322200244420110001222222222222222-100233320113
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-EGLFDVIVSNPP 173 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-~~~fD~IvsNPP 173 (264)
...-.+.|++||+.|.++-.||.+.. ..+++|+++.|++.|++..... .+|.+.++++-++. +++||+||+-
T Consensus 41 ~~ry~~alE~GCa~G~lT~~LA~RCd--rLla~Dvs~~Av~~Ar~Rla~~---~hV~v~~~~vp~~wP~~~FDLIV~S-- 113 (201)
T pfam05401 41 QGTIANALEVGCAAGAFTERLAPYCQ--RLTVIDVMPEAIARARLRMKKW---SHISWIVSDVQQFSTNELFDLIVVA-- 113 (201)
T ss_pred CHHHHHHCCCCCCCCHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHCCC---CCCEEEECCCCCCCCCCCEEEEEEE--
T ss_conf 34330020435662487899999874--6732136299999999985579---9828982566665998886279751--
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC----------HHHHHHHHHHHC
Q ss_conf 332100122111112357543321011232102568999998537887899981766----------799999999978
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN----------QKVDVVRIFESR 242 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~----------q~~~v~~ll~~~ 242 (264)
||.-|= +.....+.++...-..|.|+|.++|-+..+ -++.|..++.+.
T Consensus 114 ------------EVlYYL---------~d~a~lr~~~~~~v~~LaP~G~Lvfgsarda~crrwgh~~gaetv~~~~~e~ 171 (201)
T pfam05401 114 ------------EVLYYL---------GDVAEMRGAVRNLVSMLAPDGQLVFGSARDANCRRWGHVAGAETVIALLNES 171 (201)
T ss_pred ------------HHHHHH---------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHH
T ss_conf ------------477861---------8799999999999997189965997304510665510111189999999988
No 110
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.53 E-value=1.6e-07 Score=69.93 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=94.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHCC
Q ss_conf 8605664214211233122223332100133322200244420110001222222222222222-----10023332011
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-----EGLFDVIVSNP 172 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-----~~~fD~IvsNP 172 (264)
..-+||+|||+|--.+.+|..+|+..++|+|+....+..+-+.+...++.+ +.++.+|....+ ++.+|-|.-|=
T Consensus 55 ~p~~lEIGfG~G~~l~~~A~~~P~~~fIGiE~~~~gv~~~~~~~~~~~l~N-i~i~~~da~~~l~~~~~~~s~~~i~i~F 133 (229)
T PRK00121 55 APIHLEIGFGRGEFLVEMAKANPDINFIGIEIHEPGVAKALKKIEEAGLKN-LRLLCGDAVEVLEHFLPDGSLDRIYLNF 133 (229)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCC-EEEEECCHHHHHHHHCCCCCCCEEEECC
T ss_conf 943999615896999999986888868999961699999999999829983-8988347899999714645414046717
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHC-CCCEEEE
Q ss_conf 333210012211111235754332101123210256899999853788789998176-6799999999978-9805899
Q gi|254780875|r 173 PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY-NQKVDVVRIFESR-KLFLVNA 249 (264)
Q Consensus 173 PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~-gf~~v~~ 249 (264)
| .-|..- +|.=+ -| +-..++....+.|++||.+.+--+. +..+.+.+.+... +|..+..
T Consensus 134 P----DPWpKk-----rH~KR-Rl--------i~~~fl~~~~~~Lk~~G~i~~~TD~~~Y~~~~~e~~~~~~~f~~~~~ 194 (229)
T PRK00121 134 P----DPWPKK-----RHHKR-RL--------VQPEFLELYARVLKPGGEFHFATDWEEYAEYMLEVFGAHPGFKNLDL 194 (229)
T ss_pred C----CCCCCC-----CCCCC-CC--------CCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEECCC
T ss_conf 9----999763-----20240-12--------89999999998579998899981879999999999986869374267
No 111
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=2.5e-07 Score=68.65 Aligned_cols=187 Identities=15% Similarity=0.085 Sum_probs=117.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCEEEEEC
Q ss_conf 8589899999999999897498376853631442376775046205122356555310123321101246-860566421
Q gi|254780875|r 28 SVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRD-VVRILDLGT 106 (264)
Q Consensus 28 ~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~-~~~vLDlG~ 106 (264)
-.++..+..++.....-..+ |+..+- --=||-..|+|...+++-......... +.+++|+|+
T Consensus 14 ~~~~~~~~~~l~~Y~~lL~~-------------wN~~~N----Lt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGS 76 (215)
T COG0357 14 LSVTEEQLEKLEAYVELLLK-------------WNKAYN----LTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGS 76 (215)
T ss_pred CCCCHHHHHHHHHHHHHHHH-------------HHHHCC----CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 77559999999999999998-------------617507----7777987899999999986466502566887998579
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-H-HHHHHHCCHHHHHHCCCCCC
Q ss_conf 421123312222333210013332220024442011000122222222222222210-0-23332011333210012211
Q gi|254780875|r 107 GTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEG-L-FDVIVSNPPYIESVIVDCLG 184 (264)
Q Consensus 107 GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~-~-fD~IvsNPPYI~~~~~~~l~ 184 (264)
|.|.=++-+|-.+|+.+++-+|-..+-+..-+.=.+..++++ +.++++...+.-.. + ||+|+|=
T Consensus 77 GaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~~D~vtsR------------- 142 (215)
T COG0357 77 GAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQYDVVTSR------------- 142 (215)
T ss_pred CCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCC-EEEEHHHHHHCCCCCCCCCEEEEE-------------
T ss_conf 999731768885668818997167507999999999859997-498631276601446657589854-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE---EEECCCHHHHHHHHHHHCCCCEEEE--EECCCCC-CE
Q ss_conf 1112357543321011232102568999998537887899---9817667999999999789805899--8056899-75
Q gi|254780875|r 185 LEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS---VEIGYNQKVDVVRIFESRKLFLVNA--FKDYGGN-DR 258 (264)
Q Consensus 185 ~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~---lEig~~q~~~v~~ll~~~gf~~v~~--~kD~~g~-~R 258 (264)
|+ .-...+.+.+..++++||.++ +.-+.++..+..+.....++....+ ...-.+. +|
T Consensus 143 ----------Av-------a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r 205 (215)
T COG0357 143 ----------AV-------ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGER 205 (215)
T ss_pred ----------EE-------CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCE
T ss_conf ----------20-------2568899999984346883202658765556899999987626817999986058887734
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780875|r 259 VLLF 262 (264)
Q Consensus 259 ~vi~ 262 (264)
.++.
T Consensus 206 ~l~i 209 (215)
T COG0357 206 HLVI 209 (215)
T ss_pred EEEE
T ss_conf 9999
No 112
>KOG1541 consensus
Probab=98.51 E-value=2.5e-07 Score=68.64 Aligned_cols=140 Identities=21% Similarity=0.161 Sum_probs=87.9
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 5310123321101246860566421421123312222333210013332220024442011000122222222222222-
Q gi|254780875|r 82 VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS- 160 (264)
Q Consensus 82 v~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~- 160 (264)
.+.+++.. .+...++.-+||+|||||.-+-.+-. ++-..+|+|||+.++++|.+ ... +. .+..+|+=+.
T Consensus 37 ~eRaLELL--alp~~~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~--~e~--eg--dlil~DMG~Gl 106 (270)
T KOG1541 37 AERALELL--ALPGPKSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVE--REL--EG--DLILCDMGEGL 106 (270)
T ss_pred HHHHHHHH--HCCCCCCCEEEEECCCCCCCHHEECC--CCCEEEEECCCHHHHHHHHH--HHH--HC--CEEEEECCCCC
T ss_conf 88789876--08998871799834577743200216--89558862289899999997--664--04--76631247887
Q ss_pred --CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC---CHHHHH
Q ss_conf --210023332011333210012211111235754332101123210256899999853788789998176---679999
Q gi|254780875|r 161 --VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY---NQKVDV 235 (264)
Q Consensus 161 --~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~---~q~~~v 235 (264)
-+|.||-++| |+.-.|.. ..+-..|+|+.- +.+++......|++++..+|.+-+ .|.+.+
T Consensus 107 pfrpGtFDg~IS----ISAvQWLc-nA~~s~~~P~~R----------l~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i 171 (270)
T KOG1541 107 PFRPGTFDGVIS----ISAVQWLC-NADKSLHVPKKR----------LLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI 171 (270)
T ss_pred CCCCCCCCEEEE----EEEEEEEC-CCCCCCCCHHHH----------HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 889974124788----62032101-468444673899----------999866453210368615888524546799999
Q ss_pred HHHHHHCCCCE
Q ss_conf 99999789805
Q gi|254780875|r 236 VRIFESRKLFL 246 (264)
Q Consensus 236 ~~ll~~~gf~~ 246 (264)
.+-....||.-
T Consensus 172 ~~~a~~aGF~G 182 (270)
T KOG1541 172 MQQAMKAGFGG 182 (270)
T ss_pred HHHHHHHCCCC
T ss_conf 99988613478
No 113
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=98.50 E-value=3.2e-08 Score=74.52 Aligned_cols=78 Identities=26% Similarity=0.466 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC--------CCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 22356555310123321101246860566421421123312222333210--------0133322200244420110001
Q gi|254780875|r 75 RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKG--------VGVDISCKALEIAKSNAVTNGV 146 (264)
Q Consensus 75 RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v--------~~~Dis~~al~~A~~N~~~~~~ 146 (264)
|+|=|.+.+++ .+..||||||||.|.+.-+ .+..+.... .|+|||.+.+.-|-.. |
T Consensus 1 R~Dl~~I~~~I----------p~GSRVLDLGCGdG~LL~~-L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~R----G- 64 (205)
T TIGR02081 1 RVDLELILDLI----------PPGSRVLDLGCGDGELLAL-LRDEKQVRGPPTTEHRLYGIEIDQDGVLACVAR----G- 64 (205)
T ss_pred CHHHHHHHHHC----------CCCCEEEEECCCCHHHHHH-HHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHC----C-
T ss_conf 91578898616----------8887364101688789999-997437898887120001023454459999862----5-
Q ss_pred CCCCCCCCCCCCCCC----CCHHHHHHHC
Q ss_conf 222222222222222----1002333201
Q gi|254780875|r 147 SERFDTLQSDWFSSV----EGLFDVIVSN 171 (264)
Q Consensus 147 ~~~i~~~~~d~~~~~----~~~fD~IvsN 171 (264)
+.++++|+.+.+ ++.||+||=|
T Consensus 65 ---v~VIq~Dld~GL~~F~D~~FD~ViLs 90 (205)
T TIGR02081 65 ---VSVIQGDLDEGLEAFPDKSFDYVILS 90 (205)
T ss_pred ---CCEECCCCCCCCCCCCCCCCCEEEEC
T ss_conf ---20130060034011678876625421
No 114
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.49 E-value=6.5e-08 Score=72.50 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=80.7
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCC----CCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHCCCC-----C-
Q ss_conf 555310123321101246860566421421----12331222233-----32100133322200244420110-----0-
Q gi|254780875|r 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTG----AVCLALLKESP-----FFKGVGVDISCKALEIAKSNAVT-----N- 144 (264)
Q Consensus 80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG----~i~i~la~~~~-----~~~v~~~Dis~~al~~A~~N~~~-----~- 144 (264)
.|.+.++......... .+++|+-.||+|| .|++++....+ ..+|+|+|||..+|+.|+.-.-. -
T Consensus 80 ~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 80 ELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCC
T ss_conf 9999987998730469-853999667689955899999999873322587438999979999999986288876676544
Q ss_pred ----------------------CCCCCCCCCCCCCCCC--CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----------------------0122222222222222--2100233320113332100122111112357543321011
Q gi|254780875|r 145 ----------------------GVSERFDTLQSDWFSS--VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGI 200 (264)
Q Consensus 145 ----------------------~~~~~i~~~~~d~~~~--~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~ 200 (264)
.+..+|.|...|++.. ..++||+|+| .+.+-..+.+.+
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC------RNVLIYFd~~~q------------ 220 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC------RNVLIYFDEETQ------------ 220 (268)
T ss_pred CCHHHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEE------CCEEEEECHHHH------------
T ss_conf 99899963376469984798768762437753578887543589888998------414886378999------------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 232102568999998537887899981
Q gi|254780875|r 201 DGLSHYRTIADGVSRHLNKDGLCSVEI 227 (264)
Q Consensus 201 dGl~~~~~ii~~~~~~L~~~G~l~lEi 227 (264)
++++......|+|||+|++-+
T Consensus 221 ------~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 221 ------ERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ------HHHHHHHHHHHCCCCEEEECC
T ss_conf ------999999999748997899826
No 115
>PRK05785 hypothetical protein; Provisional
Probab=98.47 E-value=8.1e-07 Score=65.30 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=79.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHH---
Q ss_conf 46860566421421123312222333210013332220024442011000122222222222--2222100233320---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDW--FSSVEGLFDVIVS--- 170 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~--~~~~~~~fD~Ivs--- 170 (264)
.++.+|||+|||||-++..+++. .+++++|.|+.++++|+....+ .++|. +.+-++.||+|.+
T Consensus 50 ~~~~~vLDva~GTGd~a~~l~~~---~~v~~~D~s~~ML~~a~~~~~~---------v~~~ae~LPf~d~sFD~vt~~Fg 117 (225)
T PRK05785 50 KSPLKVLDAGAGPGNMAYHLRKI---RYVVALDYTEEMLRLNLVADDK---------VVGSFEAMPFRDKSFDLVMSGYA 117 (225)
T ss_pred CCCCEEEEECCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHCCCC---------EEEHHHHCCCCCCCEEEEEEEEE
T ss_conf 88882899568843999996347---8699998899999987643211---------37318539999882527763443
Q ss_pred --CCHHHHHH--CCCCCCCC--CCC-CCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCC----EEEE-E--ECCCHHHHH
Q ss_conf --11333210--01221111--123-57543321011232102-568999998537887----8999-8--176679999
Q gi|254780875|r 171 --NPPYIESV--IVDCLGLE--VRD-FDPRISLDGGIDGLSHY-RTIADGVSRHLNKDG----LCSV-E--IGYNQKVDV 235 (264)
Q Consensus 171 --NPPYI~~~--~~~~l~~~--v~~-~EP~~AL~gg~dGl~~~-~~ii~~~~~~L~~~G----~l~l-E--ig~~q~~~v 235 (264)
|-|=++.. |+...-.- +.. -.|...++.. ...+| +.++.....+...+. +-++ | -.+.+.+++
T Consensus 118 lRN~~d~~~al~E~~RVlk~~~iLe~s~P~~~~~r~--~y~~Y~~~ilP~ig~l~~~~~~a~~Y~YL~~SI~~fP~~~~l 195 (225)
T PRK05785 118 LHASDDIEKAVAEFSRVSRYQVVVAIGKPDNVVARK--LLSFYLKYILPYLACLVGPKEVCREYKKIYYIYKRLPTNSQL 195 (225)
T ss_pred EECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHH
T ss_conf 004888999999999730977999968998478999--999999656898628870999875241799999987999999
Q ss_pred HHHHHHCCCCEEEEEECCC-CCCEEEEEEC
Q ss_conf 9999978980589980568-9975999979
Q gi|254780875|r 236 VRIFESRKLFLVNAFKDYG-GNDRVLLFCR 264 (264)
Q Consensus 236 ~~ll~~~gf~~v~~~kD~~-g~~R~vi~~r 264 (264)
.+++++.||.. +++.+. |.-=+-+++|
T Consensus 196 ~~~l~~~~~~~--~~~~~~~Giv~i~~g~K 223 (225)
T PRK05785 196 RQIISRYADIK--VFEEKALGLVYFYVASS 223 (225)
T ss_pred HHHHHHHCCEE--EEECCCCCEEEEEEEEE
T ss_conf 99999848747--87506656799999980
No 116
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=98.46 E-value=2e-07 Score=69.33 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=92.6
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-CCCCCCCCCCCCCCCCC-----CCHHHHHH
Q ss_conf 4686056642142112331222233321001333222002444201100-01222222222222222-----10023332
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN-GVSERFDTLQSDWFSSV-----EGLFDVIV 169 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~-~~~~~i~~~~~d~~~~~-----~~~fD~Iv 169 (264)
.++.-+||+|||.|--.+.+|...|+..++|+|+....+..|.+.+... ++. |+.++++|....+ ++.+|-|.
T Consensus 19 ~~~pi~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~~l~-Ni~~~~~da~~~l~~~~~~~~l~~i~ 97 (199)
T pfam02390 19 NEQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQ-NLRILCGDAMKLLPNLFPDGSLQKIF 97 (199)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCC-CEEEECCCHHHHHHHHCCCCCEEEEE
T ss_conf 99944999736888999999997899878999950599999999999845777-37876047999999757988642799
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHCC--CCE
Q ss_conf 011333210012211111235754332101123210256899999853788789998176-67999999999789--805
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY-NQKVDVVRIFESRK--LFL 246 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~g--f~~ 246 (264)
.|=| .-|..- +|.=+ -| +-..++....+.|++||.+.+--+. +..+.+.+.+.+.+ |..
T Consensus 98 i~FP----DPWpKk-----rH~KR-Rl--------i~~~fl~~~~~~Lk~gG~l~~~TD~~~y~~~~~e~~~~~~~~~~~ 159 (199)
T pfam02390 98 INFP----DPWPKK-----RHHKR-RL--------LQPEFLKEYARVLKPGGVLHLATDVEEYFEWMLEHLSENHPLFER 159 (199)
T ss_pred EECC----CCCCCC-----CCCCC-CC--------CCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHEE
T ss_conf 9679----998764-----42440-00--------799999999996388989999828999999999999965613411
Q ss_pred EEEEECCC
Q ss_conf 89980568
Q gi|254780875|r 247 VNAFKDYG 254 (264)
Q Consensus 247 v~~~kD~~ 254 (264)
+....|+.
T Consensus 160 ~~~~~~~~ 167 (199)
T pfam02390 160 IHESTDLN 167 (199)
T ss_pred CCCCHHHC
T ss_conf 35775452
No 117
>KOG3010 consensus
Probab=98.46 E-value=1.2e-07 Score=70.73 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=68.6
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHCCHHHHH
Q ss_conf 05664214211233122223332100133322200244420110001222222222222222--1002333201133321
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV--EGLFDVIVSNPPYIES 177 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~--~~~fD~IvsNPPYI~~ 177 (264)
..+|+|||+|.-++.+|..++ +|+|+|+|+.+|++|++.-...-...-..+..++..+.+ ++..|+|+| .
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~------A 107 (261)
T KOG3010 36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA------A 107 (261)
T ss_pred EEEEECCCCCCCHHHHHHHHH--HHEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHH------H
T ss_conf 588845688711478887543--43130687999998611898620457853456656532378764121105------4
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 00122111112357543321011232102568999998537887899981766
Q gi|254780875|r 178 VIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN 230 (264)
Q Consensus 178 ~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~ 230 (264)
.-.|. ....++.+.+.+.|+++|-++.--++.
T Consensus 108 qa~HW---------------------Fdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010 108 QAVHW---------------------FDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred HHHHH---------------------HCHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 56776---------------------342999999999807789779999724
No 118
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.45 E-value=5.7e-07 Score=66.32 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=72.4
Q ss_pred CCCCCCEEEEECCCCC----CCCCCCCC----CCCCCCCCCCCCCCCHHHHHHCCCC-----------------------
Q ss_conf 2468605664214211----23312222----3332100133322200244420110-----------------------
Q gi|254780875|r 95 KRDVVRILDLGTGTGA----VCLALLKE----SPFFKGVGVDISCKALEIAKSNAVT----------------------- 143 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~----i~i~la~~----~~~~~v~~~Dis~~al~~A~~N~~~----------------------- 143 (264)
...+++|.-.||-||- |++.++.. ..+++|+|+|||..+++.|++-.-.
T Consensus 113 ~~~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~ 192 (287)
T PRK10611 113 RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPH 192 (287)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCC
T ss_conf 58975899767788723999999999973237777079999798889999980898889984599999951164157876
Q ss_pred -------CCCCCCCCCCCCCCCCC---CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -------00122222222222222---21002333201133321001221111123575433210112321025689999
Q gi|254780875|r 144 -------NGVSERFDTLQSDWFSS---VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV 213 (264)
Q Consensus 144 -------~~~~~~i~~~~~d~~~~---~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~ 213 (264)
-.+..+|.|...|+++. ..++||+|+| .+.+-..+++ .-++++...
T Consensus 193 ~g~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfC------RNVlIYFd~~------------------~q~~vl~~~ 248 (287)
T PRK10611 193 EGLVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFC------RNVMIYFDKT------------------TQQEILRRF 248 (287)
T ss_pred CCEEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEE------CCCCCCCCHH------------------HHHHHHHHH
T ss_conf 6618745787630777140067998888899519997------8405367899------------------999999999
Q ss_pred HHHCCCCCEEEEEECC
Q ss_conf 9853788789998176
Q gi|254780875|r 214 SRHLNKDGLCSVEIGY 229 (264)
Q Consensus 214 ~~~L~~~G~l~lEig~ 229 (264)
...|+|||+|++-+.+
T Consensus 249 ~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 249 VPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHCCCCEEEEECCC
T ss_conf 9986899289983887
No 119
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=98.45 E-value=1.7e-07 Score=69.71 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=95.2
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-C-HHHHHHHCCHHHHHH
Q ss_conf 56642142112331222233321001333222002444201100012222222222222221-0-023332011333210
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE-G-LFDVIVSNPPYIESV 178 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~-~-~fD~IvsNPPYI~~~ 178 (264)
+.|+||-.|-+++.|.+.....+++|+|+++..++.|++|...+|+.+++++..||-++.+. + ..|.|+
T Consensus 1 vADIGtDHayLpi~L~~~g~~~~aiA~Dv~~gPl~~A~~~i~~~gl~~~I~~rlgdGL~~l~~~e~vd~iv--------- 71 (204)
T pfam04816 1 LADIGSDHAYLPIYLVKNNLASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLAVIEELDLIDVIV--------- 71 (204)
T ss_pred CCEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCCEEE---------
T ss_conf 97105450899999997799877999616674999999999975997538999778422058677657799---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE
Q ss_conf 012211111235754332101123210256899999853788789998176679999999997898058
Q gi|254780875|r 179 IVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLV 247 (264)
Q Consensus 179 ~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v 247 (264)
+|=.|| ..+..|++.....+..-..+++. .-.....++++|.++||..+
T Consensus 72 ---------------IAGMGG----~lI~~IL~~~~~~~~~~~~lILQ-P~~~~~~lR~~L~~~g~~I~ 120 (204)
T pfam04816 72 ---------------IAGMGG----TLIADILEQGKNKLAGVKRLILQ-PNINEEELREWLSQNSWQIK 120 (204)
T ss_pred ---------------EECCCH----HHHHHHHHHCHHHHCCCCEEEEE-CCCCHHHHHHHHHHCCCEEE
T ss_conf ---------------948689----99999998184553575779995-79785999999998899788
No 120
>KOG2361 consensus
Probab=98.44 E-value=2.5e-07 Score=68.64 Aligned_cols=168 Identities=21% Similarity=0.321 Sum_probs=100.2
Q ss_pred HHHHCCCEEEEEEEEEEECCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 76853631442376775046205-122356555310123321101246860566421421123312222333--210013
Q gi|254780875|r 51 IHRILGWRDFYNVRLTLSSDTFE-PRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPF--FKGVGV 127 (264)
Q Consensus 51 l~YIlg~~~F~~~~f~v~~~vLI-PRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~--~~v~~~ 127 (264)
..|......+|+.-+..+.+-+- -|. +|-...-++ ... ..+.+.+||++|||.|....-+.+..|+ ..++++
T Consensus 29 ~~y~~~~~k~wD~fy~~~~~rFfkdR~---wL~~Efpel-~~~-~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ac 103 (264)
T KOG2361 29 VKYEREASKYWDTFYKIHENRFFKDRN---WLLREFPEL-LPV-DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYAC 103 (264)
T ss_pred HHHHCCHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHH-HCC-CCCCHHHHEEECCCCCCCCCHHHHCCCCCCEEEEEC
T ss_conf 666336466645666532454531167---787756775-075-555734511222477751224442489987389974
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-----C-CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 332220024442011000122222222222222-----2-1002333201133321001221111123575433210112
Q gi|254780875|r 128 DISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-----V-EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGID 201 (264)
Q Consensus 128 Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-----~-~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~d 201 (264)
|-|+.|+++.++|..... .++.-...|+-.+ . ++.+|+|++ | =.+..+.|+
T Consensus 104 Dfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~----I--FvLSAi~pe--------------- 160 (264)
T KOG2361 104 DFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL----I--FVLSAIHPE--------------- 160 (264)
T ss_pred CCCHHHHHHHHHCCCCCH--HHHCCCCEECCCHHCCCCCCCCCCCEEEE----E--EEEECCCHH---------------
T ss_conf 898689999873633264--55012000165601037888676334789----9--987514847---------------
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEE-EC-----------------------C------CHHHHHHHHHHHCCCCEEEE
Q ss_conf 3210256899999853788789998-17-----------------------6------67999999999789805899
Q gi|254780875|r 202 GLSHYRTIADGVSRHLNKDGLCSVE-IG-----------------------Y------NQKVDVVRIFESRKLFLVNA 249 (264)
Q Consensus 202 Gl~~~~~ii~~~~~~L~~~G~l~lE-ig-----------------------~------~q~~~v~~ll~~~gf~~v~~ 249 (264)
-..+.+++..++|||||.++|- .| . =-.+++.+++.+.||..++.
T Consensus 161 ---k~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361 161 ---KMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred ---HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCEEECCEEECCCCCEEEECCHHHHHHHHHHCCCCHHCC
T ss_conf ---789999999997488867998414543478875157743201458816996652236889999987515321004
No 121
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.7e-08 Score=71.70 Aligned_cols=143 Identities=16% Similarity=0.152 Sum_probs=96.6
Q ss_pred HHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 97498376853631442376775046205122356555310123321101246860566421421123312222333210
Q gi|254780875|r 45 SLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKG 124 (264)
Q Consensus 45 r~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v 124 (264)
|..=.|-+| ...-+-...+-...+.-|=.|.+.-..-.++ ..+++.+|||+|||||--+-.||+... +|
T Consensus 29 Re~FVp~~~--~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L-------~~~~g~~VLEIGtGsGY~aAvla~l~~--~V 97 (209)
T COG2518 29 RELFVPAAY--KHLAYEDRALPIGCGQTISAPHMVARMLQLL-------ELKPGDRVLEIGTGSGYQAAVLARLVG--RV 97 (209)
T ss_pred HHHCCCCHH--HCCCCCCCCCCCCCCCEECCCHHHHHHHHHH-------CCCCCCEEEEECCCCHHHHHHHHHHHC--EE
T ss_conf 875069045--4256468764478993505747999999974-------899998688877783099999999748--49
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01333222002444201100012222222222222221--0023332011333210012211111235754332101123
Q gi|254780875|r 125 VGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDG 202 (264)
Q Consensus 125 ~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dG 202 (264)
+++|+.+.-.+.|++|.+..|..+ +.+.++|.....+ .+||.|+.+ .-...++
T Consensus 98 ~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~I~Vt------aaa~~vP------------------ 152 (209)
T COG2518 98 VSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDRIIVT------AAAPEVP------------------ 152 (209)
T ss_pred EEEEECHHHHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCCCEEEEE------ECCCCCC------------------
T ss_conf 999971999999999999769873-499978855688777984789995------0357799------------------
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 21025689999985378878999817667
Q gi|254780875|r 203 LSHYRTIADGVSRHLNKDGLCSVEIGYNQ 231 (264)
Q Consensus 203 l~~~~~ii~~~~~~L~~~G~l~lEig~~q 231 (264)
+.++ +.|++||.+++-+|...
T Consensus 153 ----~~Ll----~QL~~gGrlv~PvG~~~ 173 (209)
T COG2518 153 ----EALL----DQLKPGGRLVIPVGSGP 173 (209)
T ss_pred ----HHHH----HHCCCCCEEEEEECCCC
T ss_conf ----8999----85065988999985488
No 122
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.44 E-value=2e-07 Score=69.27 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=70.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHH
Q ss_conf 4686056642142112331222233---321001333222002444201100012222222222222--22100233320
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESP---FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS--SVEGLFDVIVS 170 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~---~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~--~~~~~fD~Ivs 170 (264)
..+.+|||+|||.|--.-.++...+ ++.++|+|||+.|+..|-+.. ..+.+..+|... ..++.+|+|++
T Consensus 84 ~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~------~~~~~~Va~~~~lP~~d~s~D~vl~ 157 (272)
T PRK11088 84 EKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCC------CCCEEEEEECCCCCCCCCCCEEEEE
T ss_conf 7786488815877789999999741157873799811799999996268------8854999610018887665408999
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE-CCCHHHHHHHHHHH
Q ss_conf 113332100122111112357543321011232102568999998537887899981-76679999999997
Q gi|254780875|r 171 NPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI-GYNQKVDVVRIFES 241 (264)
Q Consensus 171 NPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi-g~~q~~~v~~ll~~ 241 (264)
- |-|.. .++..++|+|+|.++.-+ |.++-.++++++-.
T Consensus 158 v------------------FsP~~---------------~~Ef~RvLkp~G~li~V~P~~~HL~eLre~lY~ 196 (272)
T PRK11088 158 I------------------YAPCK---------------AEELARVVKPGGIVITVTPGPRHLFELKGLIYD 196 (272)
T ss_pred E------------------ECCCC---------------HHHHHHEECCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 8------------------43788---------------588612463797899997888899999999751
No 123
>KOG4300 consensus
Probab=98.38 E-value=6.1e-07 Score=66.13 Aligned_cols=168 Identities=18% Similarity=0.137 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 98999999999998974983768536314423767750462051223565553101233211012468605664214211
Q gi|254780875|r 31 DDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGA 110 (264)
Q Consensus 31 ~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~ 110 (264)
.+.-...+-....++.+.+|+=|-...++||...-.-- + +.|-+-.-.+ .-+.....+|++|||+|.
T Consensus 23 ~p~~l~nfv~n~~~~~~~~~~~p~~~ft~~yne~~~~y--------k-relFs~i~~~----~gk~~K~~vLEvgcGtG~ 89 (252)
T KOG4300 23 VPWRLRNFVLNYESRQKSDLLIPNSNFTSIYNEIADSY--------K-RELFSGIYYF----LGKSGKGDVLEVGCGTGA 89 (252)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH--------H-HHHHHHHHHH----HCCCCCCCEEEECCCCCC
T ss_conf 57889888877885276556651367799999999999--------9-9998526877----343575136996146888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC-CCCCCCCCC---CCCHHHHHHHCCHHHHHHCCCCCCCC
Q ss_conf 23312222333210013332220024442011000122222-222222222---21002333201133321001221111
Q gi|254780875|r 111 VCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFD-TLQSDWFSS---VEGLFDVIVSNPPYIESVIVDCLGLE 186 (264)
Q Consensus 111 i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~-~~~~d~~~~---~~~~fD~IvsNPPYI~~~~~~~l~~~ 186 (264)
= .-...--|...|+++|=++++-++|.+.+..+.-.+ +. |..++..+- .++++|.|||- -.
T Consensus 90 N-fkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~T------lv------- 154 (252)
T KOG4300 90 N-FKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCT------LV------- 154 (252)
T ss_pred C-CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCC-EEEEEEECHHCCCCCCCCCEEEEEEE------EE-------
T ss_conf 8-535557888568986784879999998886425720-57778505210742136771157778------88-------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEECCCHHHHHHHHH
Q ss_conf 12357543321011232102568999998537887899-981766799999999
Q gi|254780875|r 187 VRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS-VEIGYNQKVDVVRIF 239 (264)
Q Consensus 187 v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~-lEig~~q~~~v~~ll 239 (264)
|++- +...+.+.+..++|+|+|.++ +||+..+-.....++
T Consensus 155 ---------LCSv----e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~ 195 (252)
T KOG4300 155 ---------LCSV----EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRIL 195 (252)
T ss_pred ---------EECC----CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf ---------7205----7799999998875088958999721244210899999
No 124
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=6e-08 Score=72.74 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=74.3
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 42376775046205122356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r 60 FYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 60 F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
-+|..|.+++++ ++.+++.. +..++-.|+|+|+|.|++...|++.. .+|+|+|+++..+..-++
T Consensus 7 ~~GQnFL~d~~v----------~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~ 70 (259)
T COG0030 7 RLGQNFLIDKNV----------IDKIVEAA----NISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKE 70 (259)
T ss_pred CCCCCCCCCHHH----------HHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHHC--CEEEEEEECHHHHHHHHH
T ss_conf 766454147879----------99999855----78999869997898778899999606--957999968899999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC--HHHHHHHCCHH-HHHH
Q ss_conf 0110001222222222222222-10--02333201133-3210
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSV-EG--LFDVIVSNPPY-IESV 178 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~-~~--~fD~IvsNPPY-I~~~ 178 (264)
... ...|++++++|.+..- +. .++.||||.|| |.+.
T Consensus 71 ~~~---~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~Issp 110 (259)
T COG0030 71 RFA---PYDNLTVINGDALKFDFPSLAQPYKVVANLPYNISSP 110 (259)
T ss_pred HHC---CCCCEEEEECCHHCCCCHHHCCCCEEEECCCCCCCHH
T ss_conf 506---5665599947242475135157888998089765679
No 125
>KOG1500 consensus
Probab=98.36 E-value=1.9e-07 Score=69.52 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=77.0
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHCC
Q ss_conf 124686056642142112331222233321001333222002444201100012222222222222-2210023332011
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS-SVEGLFDVIVSNP 172 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~-~~~~~fD~IvsNP 172 (264)
..-+..-|||+|||||+++...|+. ...+|++++-|. +.+.|++-.+.|++.+||.++.|.+.+ .++++.|+|+|-|
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEP 251 (517)
T KOG1500 174 SDFQDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEP 251 (517)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHH-CCCEEEEEEHHH-HHHHHHHHHHCCCCCCEEEECCCCCCEECCCCCCCEEEECC
T ss_conf 3457748998158824899999873-865389874567-99999998743663203787056320103751034787256
Q ss_pred H-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 3-33210012211111235754332101123210256899999853788789998176
Q gi|254780875|r 173 P-YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY 229 (264)
Q Consensus 173 P-YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~ 229 (264)
= |.--++ +- |+- --.+.++|+|+|.++=-+|.
T Consensus 252 MG~mL~NE--------RM-------------LEs----Yl~Ark~l~P~GkMfPT~gd 284 (517)
T KOG1500 252 MGYMLVNE--------RM-------------LES----YLHARKWLKPNGKMFPTVGD 284 (517)
T ss_pred CHHHHHHH--------HH-------------HHH----HHHHHHHCCCCCCCCCCCCC
T ss_conf 21411108--------88-------------999----99998742877744675253
No 126
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=98.35 E-value=2.1e-07 Score=69.21 Aligned_cols=111 Identities=23% Similarity=0.234 Sum_probs=69.9
Q ss_pred CCCCCCCEEEEECCCCC----CCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHCCCCC--------------------
Q ss_conf 12468605664214211----233122223-----3321001333222002444201100--------------------
Q gi|254780875|r 94 EKRDVVRILDLGTGTGA----VCLALLKES-----PFFKGVGVDISCKALEIAKSNAVTN-------------------- 144 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~----i~i~la~~~-----~~~~v~~~Dis~~al~~A~~N~~~~-------------------- 144 (264)
...++++|+=.||.||- |++.+.... ...+++|+|||..|++.|++-.-..
T Consensus 27 ~~~~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~ 106 (194)
T pfam01739 27 RNSRRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAG 106 (194)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCC
T ss_conf 88995599973688995189999999997432578744999973988999999878988999845999999962860789
Q ss_pred -------CCCCCCCCCCCCCCCCC-CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -------01222222222222222-1002333201133321001221111123575433210112321025689999985
Q gi|254780875|r 145 -------GVSERFDTLQSDWFSSV-EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRH 216 (264)
Q Consensus 145 -------~~~~~i~~~~~d~~~~~-~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~ 216 (264)
.+..+|.|...|+++.. ..+||+|+| .+.+-..+.+ .-++++......
T Consensus 107 ~~~~i~~~lr~~V~F~~~NL~~~~~~~~~DlIfC------RNVlIYF~~~------------------~~~~vl~~l~~~ 162 (194)
T pfam01739 107 GGYRVKPEIKEMVLFEYHNLLDYPPLGDFDVIFC------RNVLIYFDEE------------------TQRKILNRFASA 162 (194)
T ss_pred CCEEECHHHHCCCEEEECCCCCCCCCCCEEEEEE------CCEEEECCHH------------------HHHHHHHHHHHH
T ss_conf 9487688997116685466556887675039998------0210137999------------------999999999998
Q ss_pred CCCCCEEEEEEC
Q ss_conf 378878999817
Q gi|254780875|r 217 LNKDGLCSVEIG 228 (264)
Q Consensus 217 L~~~G~l~lEig 228 (264)
|+|||+|++-++
T Consensus 163 L~~gG~L~lG~~ 174 (194)
T pfam01739 163 LKPGGYLFLGHS 174 (194)
T ss_pred HCCCCEEEEECC
T ss_conf 489949998075
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.32 E-value=1.2e-07 Score=70.83 Aligned_cols=89 Identities=24% Similarity=0.222 Sum_probs=65.6
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHH
Q ss_conf 0124686056642142112331222233-321001333222002444201100012222222222222221--0023332
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--GLFDVIV 169 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~Iv 169 (264)
.+-.+..+|||+|||||--+-.+|.... +..|+++|+.++-.+.|++|....|.. ++.+.+||.....+ .+||.|+
T Consensus 71 L~l~pg~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~~-NV~vv~GDG~~G~pe~APYD~II 149 (317)
T PRK13943 71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEFSPYDVIF 149 (317)
T ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCEEE
T ss_conf 17899986899657743899999998487875999986799999999999977998-64999799888886679977899
Q ss_pred H--CCHHHHHHCCCC
Q ss_conf 0--113332100122
Q gi|254780875|r 170 S--NPPYIESVIVDC 182 (264)
Q Consensus 170 s--NPPYI~~~~~~~ 182 (264)
. -+|-||..-+++
T Consensus 150 VTAaa~~IP~aLldQ 164 (317)
T PRK13943 150 VTVGVDEVPETWFTQ 164 (317)
T ss_pred EEECCCCCCHHHHHH
T ss_conf 985276489999996
No 128
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.32 E-value=1.1e-06 Score=64.56 Aligned_cols=120 Identities=24% Similarity=0.257 Sum_probs=97.4
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHCCHHHH
Q ss_conf 60566421421123312222333210013332220024442011000122222222222222210--0233320113332
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEG--LFDVIVSNPPYIE 176 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~--~fD~IvsNPPYI~ 176 (264)
.++.|+||-.+-+++.+.+..+...++++|+++..++.|.+|..++++.+++.+..+|.+..+.. .+|.|+
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~iv------- 90 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIV------- 90 (226)
T ss_pred CCEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEE-------
T ss_conf 9455326762576899996598326898310667899999988745885207775268731257667768799-------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE
Q ss_conf 10012211111235754332101123210256899999853788789998176679999999997898058
Q gi|254780875|r 177 SVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLV 247 (264)
Q Consensus 177 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v 247 (264)
+|=.|| ..++.|++...+.|+.--.+++. .-.+...+++++..++|..+
T Consensus 91 -----------------IAGMGG----~lI~~ILee~~~~l~~~~rlILQ-Pn~~~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 91 -----------------IAGMGG----TLIREILEEGKEKLKGVERLILQ-PNIHTYELREWLSANSYEIK 139 (226)
T ss_pred -----------------EECCCH----HHHHHHHHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHHCCCEEE
T ss_conf -----------------957867----89999999866550574107878-88788999999996795144
No 129
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.31 E-value=3.3e-07 Score=67.89 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=84.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC----C-CHHHHHHH
Q ss_conf 468605664214211233122223332100133322200244420110001222222222222222----1-00233320
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV----E-GLFDVIVS 170 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~----~-~~fD~Ivs 170 (264)
.....+||||||+|--.+.+|+++|+..++|+|+....+..|.+-+...++. |+.++++|....+ + +..|-|.-
T Consensus 47 ~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 47 NNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHCCCCCCEEEEEE
T ss_conf 8896699968889878999998789877899997348999999999982998-469980779999973589885657999
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 11333210012211111235754332101123210256899999853788789998176
Q gi|254780875|r 171 NPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY 229 (264)
Q Consensus 171 NPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~ 229 (264)
|=| .-|+.. +|+=+. -....+++...+.|++||.+.|--+.
T Consensus 126 ~FP----DPWpKk-----RH~KRR---------l~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 126 NFP----DPWPKK-----RHHKRR---------LTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred ECC----CCCCCC-----CCCCCC---------CCCHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 799----999876-----643321---------47889999999972689789997267
No 130
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=98.31 E-value=1.6e-06 Score=63.44 Aligned_cols=181 Identities=20% Similarity=0.173 Sum_probs=104.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 44885898999999999998974983768536314423767750462051223565553101233211012468605664
Q gi|254780875|r 25 DPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDL 104 (264)
Q Consensus 25 ~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDl 104 (264)
.....+++.+..++...++.. .+++.-.|.+.. +. -|||.=-++-=+-+......-++.+|||+
T Consensus 59 ~~~~~ls~~~~~~l~~~L~~l------------~PWRKGPF~l~g-i~---IDtEWrSd~KW~Rl~~~i~~L~gk~VlDV 122 (315)
T pfam08003 59 GTEEPLSHGEQKKLEQLLRAL------------MPWRKGPFHLHG-VH---IDTEWRSDWKWDRVLPHLSPLKGRTILDV 122 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHC------------CCCCCCCEEECC-CC---CCCCCCCCCCHHHHHHHHCCCCCCEEEEC
T ss_conf 578889989999999999842------------997779812068-00---44210042229988734224268988751
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC--CCCCCCCCCCCCCCC--CCHHHHHHHCCHHHHHHCC
Q ss_conf 214211233122223332100133322200244420110001--222222222222222--1002333201133321001
Q gi|254780875|r 105 GTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGV--SERFDTLQSDWFSSV--EGLFDVIVSNPPYIESVIV 180 (264)
Q Consensus 105 G~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~--~~~i~~~~~d~~~~~--~~~fD~IvsNPPYI~~~~~ 180 (264)
|||+|--.--++-+-+. .|+|+|=+. +-+.+--+-++=+ +.++.+.---+ +.+ .+.||.|+|
T Consensus 123 GcgNGYy~~RMlg~ga~-~viGiDPs~--lf~~QF~ai~~~~~~~~~~~~lPlg~-E~lp~~~~FDtVFs---------- 188 (315)
T pfam08003 123 GCGNGYHMWRMLGEGAA-LVVGIDPSE--LFLCQFEAVRKLLGNDQRAHLLPLGI-EQLPALEAFDTVFS---------- 188 (315)
T ss_pred CCCCHHHHHHHHHCCCC-EEEEECCHH--HHHHHHHHHHHHCCCCCCEEEECCCH-HHCCCCCCCCEEEE----------
T ss_conf 77864999986223998-799889819--99999999999708987568853676-54866342155776----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE----CC--------------------CHHHHHH
Q ss_conf 22111112357543321011232102568999998537887899981----76--------------------6799999
Q gi|254780875|r 181 DCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI----GY--------------------NQKVDVV 236 (264)
Q Consensus 181 ~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi----g~--------------------~q~~~v~ 236 (264)
..|+-|-. +.+ .-+.+.++.|++||.+++|- |. .-...+.
T Consensus 189 ----MGVLYHrr--------sP~----~hL~~Lk~~L~~gGeLvLETlvi~gd~~~~L~P~~rYA~M~NV~fiPS~~~L~ 252 (315)
T pfam08003 189 ----MGVLYHRR--------SPL----DHLLQLKDQLVKGGELVLETLVIEGDENTVLVPGDRYAQMRNVYFIPSAAALK 252 (315)
T ss_pred ----EEEEECCC--------CHH----HHHHHHHHHCCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCEECCCHHHHH
T ss_conf ----54443268--------989----99999998528797899998776598872567885414798754547889999
Q ss_pred HHHHHCCCCEEEEEE
Q ss_conf 999978980589980
Q gi|254780875|r 237 RIFESRKLFLVNAFK 251 (264)
Q Consensus 237 ~ll~~~gf~~v~~~k 251 (264)
..+++.||.++++..
T Consensus 253 ~Wl~r~GF~~i~~vd 267 (315)
T pfam08003 253 NWLEKCGFVDVRIVD 267 (315)
T ss_pred HHHHHCCCCEEEEEE
T ss_conf 999985993278887
No 131
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=98.24 E-value=4.2e-07 Score=67.19 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=95.9
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 44237677504620512235655531012--3321101246860566421421123312222333210013332220024
Q gi|254780875|r 59 DFYNVRLTLSSDTFEPRPETELLVDSALA--FSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEI 136 (264)
Q Consensus 59 ~F~~~~f~v~~~vLIPRpeTE~lv~~~l~--~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~ 136 (264)
.+.|+++.+-++- ==||=|-..=|+.-. .+ ...-.+.++||+++|||.+|+- |..+....++.+|.|.++..+
T Consensus 19 ~~~gr~L~~~~~~-~tRPT~d~VREslFNiv~~---~~~i~~~~~LD~FAGsG~LG~E-ALSRgA~~~~f~E~d~~~~~~ 93 (210)
T TIGR00095 19 KYRGRKLKAPNGS-STRPTTDRVRESLFNIVIL---RPEIVGAHFLDLFAGSGSLGLE-ALSRGAKSAVFVEQDKKVAQT 93 (210)
T ss_pred CCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHH---HHHHCCCEEEEEECCCHHHHHH-HHHHCCCEEEEEECCHHHHHH
T ss_conf 2267514468989-7445641245678769999---8763687278854064465376-640141623787368679999
Q ss_pred HHHCCCCCC----CCCCCCCCCCCC---CCCC---CC-HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 442011000----122222222222---2222---10-023332011333210012211111235754332101123210
Q gi|254780875|r 137 AKSNAVTNG----VSERFDTLQSDW---FSSV---EG-LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSH 205 (264)
Q Consensus 137 A~~N~~~~~----~~~~i~~~~~d~---~~~~---~~-~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~ 205 (264)
-.+|.+..+ .+.....+.-+- +... .. .||+|.--|||=... .++++-+ ..
T Consensus 94 l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~~~~~ts~~d~iylDPPf~~~~---------ad~~~~l---------~l 155 (210)
T TIGR00095 94 LKENLSTLKNRLKLSGEQATVLNDAERALLFLAKKQTSPFDIIYLDPPFNTGL---------ADLEAIL---------EL 155 (210)
T ss_pred HHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC---------CCHHHHH---------HH
T ss_conf 99999998887158530000000256665776517996114787148888761---------0379999---------99
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 2568999998537887899981766
Q gi|254780875|r 206 YRTIADGVSRHLNKDGLCSVEIGYN 230 (264)
Q Consensus 206 ~~~ii~~~~~~L~~~G~l~lEig~~ 230 (264)
+..-++-..++|+|+|.+++|...+
T Consensus 156 ~~~alerl~~~L~~~~~i~ve~~~~ 180 (210)
T TIGR00095 156 LGEALERLNKWLNPKGLIVVEYDRE 180 (210)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9999998731048785799863412
No 132
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=98.23 E-value=1.7e-06 Score=63.27 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=94.3
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCHHHHH
Q ss_conf 124686056642142112331222233-3210013332220024442011000122222222222222----21002333
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEGLFDVI 168 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~~fD~I 168 (264)
...+..+|||+|+|-|.=+..+|...+ ...++|.|+++.-++..++|+.+.|+.+ +.....|.... ..++||.|
T Consensus 81 ~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-~~~~~~d~~~~~~~~~~~~fD~v 159 (277)
T pfam01189 81 NPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFN-IIVQEGDARQIDQKLLGGEFDRI 159 (277)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCCCCCEE
T ss_conf 88999989883678881699999875898779983797899999999999759974-79996644455743466666579
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCC---CCHHHHHHHHHHHCCCCCEEEEE---ECCCHHHH-HHHHHH
Q ss_conf 2011333210012211111235754332101-1232---10256899999853788789998---17667999-999999
Q gi|254780875|r 169 VSNPPYIESVIVDCLGLEVRDFDPRISLDGG-IDGL---SHYRTIADGVSRHLNKDGLCSVE---IGYNQKVD-VVRIFE 240 (264)
Q Consensus 169 vsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg-~dGl---~~~~~ii~~~~~~L~~~G~l~lE---ig~~q~~~-v~~ll~ 240 (264)
+.-+|=-...-+ ...|..-+.-. .+.. ..-++++..+.++|+|||.++.- +....-+. |..+++
T Consensus 160 LvDaPCSg~G~~--------rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eENe~vV~~fL~ 231 (277)
T pfam01189 160 LLDAPCSGTGVI--------RRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAVIKYFLQ 231 (277)
T ss_pred EECCCCCCCCEE--------CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 972898898634--------558531211999999999999999999999971769989999499998998999999998
Q ss_pred HC-CCCEE
Q ss_conf 78-98058
Q gi|254780875|r 241 SR-KLFLV 247 (264)
Q Consensus 241 ~~-gf~~v 247 (264)
++ .|..+
T Consensus 232 ~~~~~~~~ 239 (277)
T pfam01189 232 KRPDVELV 239 (277)
T ss_pred HCCCCEEE
T ss_conf 69998990
No 133
>KOG2730 consensus
Probab=98.22 E-value=4.3e-07 Score=67.09 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=84.7
Q ss_pred HHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 99999998974983768536314423767750462051223565553101233211012468605664214211233122
Q gi|254780875|r 37 FLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALL 116 (264)
Q Consensus 37 ~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la 116 (264)
+...+..|...| -|+--+-||| | -|-++-|.+...+... .....++|..||.|-=.+-.|
T Consensus 54 ~ryrlfsrfd~g---i~md~e~wfs-----v-----Tpe~ia~~iA~~v~~~-------~~~~~iidaf~g~gGntiqfa 113 (263)
T KOG2730 54 NRYRLFSRFDSG---IYMDREGWFS-----V-----TPEKIAEHIANRVVAC-------MNAEVIVDAFCGVGGNTIQFA 113 (263)
T ss_pred HHHHHHHHHCCC---EEECCCCEEE-----E-----CCHHHHHHHHHHHHHH-------CCCCHHHHHHHCCCCHHHHHH
T ss_conf 998888763434---1664245477-----2-----5189999998788873-------374300254536884288998
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------CCHHHHHHHCCHH
Q ss_conf 223332100133322200244420110001222222222222222------1002333201133
Q gi|254780875|r 117 KESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV------EGLFDVIVSNPPY 174 (264)
Q Consensus 117 ~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------~~~fD~IvsNPPY 174 (264)
...+ .|+++|++|.-+.+|+.|++-+|+.+||+|++|||++.. ...+|++.--||+
T Consensus 114 ~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730 114 LQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred HHCC--EEEEEECCHHHHHHHHCCCEEECCCCEEEEEECHHHHHHHHHHHHHHEEEEEECCCCC
T ss_conf 7188--0799852678888776065032577505888330999999886410104566169999
No 134
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=98.19 E-value=2.5e-07 Score=68.66 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=73.0
Q ss_pred EEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 14423767750462051223565553101233211012468605664214211233122223332100133322200244
Q gi|254780875|r 58 RDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIA 137 (264)
Q Consensus 58 ~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A 137 (264)
+-.+|..|.+|+++ ++.+++.. +..+...|||+|.|.|.+.-.|+.. ..+++++|+++..++.-
T Consensus 5 kK~lGQnFL~d~~i----------~~kIv~~~----~~~~~d~VlEIGPG~G~LT~~L~~~--~~~v~aiE~D~~l~~~L 68 (258)
T pfam00398 5 RRSYGQNFLTNKKV----------INRIVDKA----NLQESDTVLEIGPGKGALTEELAKR--AKQVVAIEIDPRLAKRL 68 (258)
T ss_pred CCCCCCCCCCCHHH----------HHHHHHHC----CCCCCCEEEEECCCHHHHHHHHHHC--CCCEEEEECCHHHHHHH
T ss_conf 56677531389999----------99999970----8999997999799623999999961--69479995447799999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHCCHHH
Q ss_conf 42011000122222222222222210--023332011333
Q gi|254780875|r 138 KSNAVTNGVSERFDTLQSDWFSSVEG--LFDVIVSNPPYI 175 (264)
Q Consensus 138 ~~N~~~~~~~~~i~~~~~d~~~~~~~--~fD~IvsNPPYI 175 (264)
++.... ..+++++++|.+..-.. .--.||+|.||-
T Consensus 69 ~~~~~~---~~~~~ii~~D~l~~d~~~~~~~~vvgNLPY~ 105 (258)
T pfam00398 69 QKKLAL---HPNVEVVHQDFLKFSFPKHEPFLVVGNIPYN 105 (258)
T ss_pred HHHHCC---CCCEEEEECCHHCCCCCCCCCEEEEECCCCC
T ss_conf 986442---8977999663010575457861689448863
No 135
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=98.18 E-value=3.1e-06 Score=61.51 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=95.3
Q ss_pred CCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC---C-CCCHHHHHHHCC
Q ss_conf 8605664214211233122-2233321001333222002444201100012222222222222---2-210023332011
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALL-KESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS---S-VEGLFDVIVSNP 172 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la-~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~---~-~~~~fD~IvsNP 172 (264)
..+++|+|||.|.=||-|+ -.+|+.+++-+|=+.+=+..-++=+...++++ +..+++...+ . ...+||.|+|
T Consensus 50 ~~~~~DiGSG~GfPGipL~Ci~~p~~~~~Lles~~KK~~FL~~v~~~L~L~N-~~i~~~R~E~~g~~~~~~~~D~~~~-- 126 (197)
T TIGR00138 50 GKKVIDIGSGAGFPGIPLACILRPELKLTLLESNKKKVNFLKEVKKELGLNN-VEILNGRVEDLGSKQHEEQFDVITS-- 126 (197)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC-CHHEEHHHHHCCCCCCCCCCCEEEE--
T ss_conf 3126773478971456534220576428984277406899999999838998-2420011255055453335787898--
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH---HHHCCCCEEEE
Q ss_conf 333210012211111235754332101123210256899999853788789998176679999999---99789805899
Q gi|254780875|r 173 PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRI---FESRKLFLVNA 249 (264)
Q Consensus 173 PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~l---l~~~gf~~v~~ 249 (264)
.|| .....+.+.+..+++++|.+++=-|..-.+++.+. ....++....+
T Consensus 127 ---------------------RAl-------~~l~~~~e~~~~L~~~~G~~~~~KG~~~~~E~~~~~~~~~~~~~~~l~~ 178 (197)
T TIGR00138 127 ---------------------RAL-------VSLNELLELTLPLLKVGGYFLAYKGKYLEDEIEEKKRKIQVLGVEVLKV 178 (197)
T ss_pred ---------------------CCC-------HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCHHHHHHHCCEEEEE
T ss_conf ---------------------031-------0246888866303788978999708665888760501255635600000
Q ss_pred ---EECCCCCCEEEEE
Q ss_conf ---8056899759999
Q gi|254780875|r 250 ---FKDYGGNDRVLLF 262 (264)
Q Consensus 250 ---~kD~~g~~R~vi~ 262 (264)
..+.+|..|.++.
T Consensus 179 ~~~~~~~sg~~r~lv~ 194 (197)
T TIGR00138 179 PSLTANVSGFQRHLVI 194 (197)
T ss_pred CCCCCCCCCCCCCEEE
T ss_conf 0256787876300687
No 136
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=98.17 E-value=2.7e-07 Score=68.43 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=67.3
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 42376775046205122356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r 60 FYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 60 F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
-+|..|.+++++ ++.+++.. +..+...|+|+|.|.|++.-.|+... .+++++|+++..++.-++
T Consensus 16 ~lGQnFL~d~~i----------i~kIv~~~----~~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~ 79 (267)
T PRK00274 16 SLGQNFLIDENI----------IDKIVRAA----DLQPGDRVLEIGPGLGALTEPLLERA--AKVTAIEIDRDLAPILRE 79 (267)
T ss_pred CCCCCCCCCHHH----------HHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHHC--CCEEEEECCHHHHHHHHH
T ss_conf 778221489899----------99999960----89999907996388888999999626--805886368899999850
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCHHH
Q ss_conf 01100012222222222222221-----0023332011333
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSVE-----GLFDVIVSNPPYI 175 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~~-----~~fD~IvsNPPYI 175 (264)
. .+++++++|.+..-. ..--.||+|.||-
T Consensus 80 ~-------~~~~ii~~D~L~~~~~~~~~~~~~~vvgNLPY~ 113 (267)
T PRK00274 80 T-------DNLTIIEGDALKVDLEELAEGQPLKVVANLPYN 113 (267)
T ss_pred C-------CCEEEEECHHHHCCHHHHCCCCCEEEEECCCCH
T ss_conf 4-------786999650664786774567872799558830
No 137
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.16 E-value=1.3e-06 Score=63.90 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=94.6
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHH
Q ss_conf 124686056642142112331222233-32100133322200244420110001222222222222---22210023332
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF---SSVEGLFDVIV 169 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~---~~~~~~fD~Iv 169 (264)
..+++-+|||+|+.-|-=+..+|.... ...++|.|+++.-++.-++|+++.|+.+ +.+.+.|-. ...++.||.|+
T Consensus 110 ~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n-~~vt~~d~~~~~~~~~~~FD~IL 188 (471)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPEMFDAIL 188 (471)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC-EEEEECCHHHHHHHCCCCCCEEE
T ss_conf 88999989995778548999999975899669998388999999999999719984-79993586674032301066799
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE---EECCCHHHHH-HHHHHHCCC
Q ss_conf 01133321001221111123575433210112321025689999985378878999---8176679999-999997898
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV---EIGYNQKVDV-VRIFESRKL 244 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l---Eig~~q~~~v-~~ll~~~gf 244 (264)
...|--..+.+..-+.-...|.|..-. .--..-++|+..+...|+|||.++. -+.+..-|.+ ..++++++-
T Consensus 189 vDaPCSG~G~~rk~p~~~~~w~~~~~~----~~~~~Q~~iL~~A~~~LkpGG~LVYSTCT~~peENE~vv~~~l~~~p~ 263 (471)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNL----EIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYGD 263 (471)
T ss_pred ECCCCCCCEEECCCHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 878888873355597576418987999----999999999999998738896899981799956679999999986886
No 138
>KOG0820 consensus
Probab=98.16 E-value=4.3e-07 Score=67.10 Aligned_cols=89 Identities=25% Similarity=0.346 Sum_probs=70.9
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55310123321101246860566421421123312222333210013332220024442011000122222222222222
Q gi|254780875|r 81 LVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS 160 (264)
Q Consensus 81 lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~ 160 (264)
+++++++. ...+++-.||++|-|+|.+...+... +++|+|+++++..+.--.+-.+..-.+++.++.++|++..
T Consensus 46 v~~~I~~k----a~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820 46 VIDQIVEK----ADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHC----CCCCCCCEEEEECCCCCHHHHHHHHH--CCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC
T ss_conf 89999860----47899877999579877899999972--0848999408078999999866998656046885031257
Q ss_pred CCCHHHHHHHCCHHH
Q ss_conf 210023332011333
Q gi|254780875|r 161 VEGLFDVIVSNPPYI 175 (264)
Q Consensus 161 ~~~~fD~IvsNPPYI 175 (264)
-...||.+|+|-||=
T Consensus 120 d~P~fd~cVsNlPyq 134 (315)
T KOG0820 120 DLPRFDGCVSNLPYQ 134 (315)
T ss_pred CCCCCCEEECCCCCC
T ss_conf 885103112269853
No 139
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=98.15 E-value=7.2e-07 Score=65.64 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHCC
Q ss_conf 124686056642142112331222233321001333222002444201100012222222222222-2210023332011
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS-SVEGLFDVIVSNP 172 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~-~~~~~fD~IvsNP 172 (264)
+--+|.|+||||||.|-=+|.|+.. +--|.++|.|+.|++.-.+-+.+-+|.+ +....-|+-+ .+...||+|+|
T Consensus 70 k~v~PcKtLDLGCGqGrNsLyLsl~--GYDV~awD~n~~siA~v~~~k~~EnL~n-l~t~~yDiNaa~~~e~YDFI~s-- 144 (239)
T TIGR00477 70 KVVKPCKTLDLGCGQGRNSLYLSLA--GYDVDAWDHNEASIASVEEIKEKENLDN-LRTDVYDINAAALDEDYDFILS-- 144 (239)
T ss_pred HCCCCCCEEECCCCCCHHHHHHHHH--CCCCEEECCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCCCCEEEE--
T ss_conf 0237986532688885378999761--6841012168668875998887626711-0046554335540127874210--
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 3332100122111112357543321011232102568999998537887899
Q gi|254780875|r 173 PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS 224 (264)
Q Consensus 173 PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~ 224 (264)
+-..--|+.+ -+-.||.+..++=+|||+=+
T Consensus 145 ----TVVf~FL~a~------------------rvP~iIanMq~hT~pGGYNL 174 (239)
T TIGR00477 145 ----TVVFMFLEAE------------------RVPEIIANMQEHTKPGGYNL 174 (239)
T ss_pred ----EHHHHHHCCC------------------CCHHHHHHHHHHCCCCCCEE
T ss_conf ----2012210588------------------77267886587467987322
No 140
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=98.11 E-value=1.8e-07 Score=69.61 Aligned_cols=83 Identities=24% Similarity=0.296 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCC-----CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 211012468605664214211233122-----223332100133322200244420110001222222222222222---
Q gi|254780875|r 90 LPRIEKRDVVRILDLGTGTGAVCLALL-----KESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV--- 161 (264)
Q Consensus 90 ~~~~~~~~~~~vLDlG~GsG~i~i~la-----~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~--- 161 (264)
.++...-+..++-||.||.|--++=.| +--|+.++|||||+++|+..|+.-|+..|+++ +.|.--|--.+.
T Consensus 230 r~WV~e~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~-~~F~aLDsa~f~~~~ 308 (386)
T TIGR02085 230 RQWVRELPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLEN-LSFAALDSAKFATAQ 308 (386)
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHH
T ss_conf 9999745711032010465412789989876415897044313437789999999998735332-104544579999862
Q ss_pred -CCHHHHHHHCCH
Q ss_conf -100233320113
Q gi|254780875|r 162 -EGLFDVIVSNPP 173 (264)
Q Consensus 162 -~~~fD~IvsNPP 173 (264)
++.=|+|+-|||
T Consensus 309 ~e~~PeLVlVNPP 321 (386)
T TIGR02085 309 AESVPELVLVNPP 321 (386)
T ss_pred CCCCCCEEEECCC
T ss_conf 3688965776788
No 141
>PRK00811 spermidine synthase; Provisional
Probab=98.10 E-value=7e-06 Score=59.16 Aligned_cols=189 Identities=17% Similarity=0.239 Sum_probs=118.3
Q ss_pred CCCHHHH-CCCEEEEEEEEEEECCCCCHHHH----HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9837685-36314423767750462051223----565553101233211012468605664214211233122223332
Q gi|254780875|r 48 HESIHRI-LGWRDFYNVRLTLSSDTFEPRPE----TELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFF 122 (264)
Q Consensus 48 g~Pl~YI-lg~~~F~~~~f~v~~~vLIPRpe----TE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~ 122 (264)
..|.|.| +-+...+|.-+..|-.+..---+ .|.|+.-.+. ...++.+||=+|-|-|.++=.+++.-.-.
T Consensus 30 ~S~yQ~i~i~~s~~~G~~l~LDg~~q~se~DE~~YhE~lvH~pl~------~h~~pk~VLIiGGGDGg~~rE~lkh~~v~ 103 (283)
T PRK00811 30 KSPFQKIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLL------AHPNPKKVLIIGGGDGGTLREVLKHPSVE 103 (283)
T ss_pred CCCCCEEEEEECCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHH------HCCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 579847999986774239999998544038577776775404777------38997748995687479999984278856
Q ss_pred CCCCCCCCCCCHHHHHHCCCCC--C-C-CCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 1001333222002444201100--0-1-222222222222222---1002333201133321001221111123575433
Q gi|254780875|r 123 KGVGVDISCKALEIAKSNAVTN--G-V-SERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRIS 195 (264)
Q Consensus 123 ~v~~~Dis~~al~~A~~N~~~~--~-~-~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~A 195 (264)
+|+.+|++++.+++|++-.... + . +.|++++.+|.+.++ .++||+|+..- .| |. -|...
T Consensus 104 ~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~yDvII~D~-----tD-----P~----gpa~~ 169 (283)
T PRK00811 104 KITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSFDVIIVDS-----TD-----PV----GPAEG 169 (283)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCEEEEEC-----CC-----CC----CHHHH
T ss_conf 799994689999999998388631330297159982789999984523554899808-----99-----88----64455
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC--CHHHHHHHHHHH--CCCCEEEEEE----CC-CCCCEEEEEEC
Q ss_conf 2101123210256899999853788789998176--679999999997--8980589980----56-89975999979
Q gi|254780875|r 196 LDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY--NQKVDVVRIFES--RKLFLVNAFK----DY-GGNDRVLLFCR 264 (264)
Q Consensus 196 L~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~--~q~~~v~~ll~~--~gf~~v~~~k----D~-~g~~R~vi~~r 264 (264)
|| -+.+.+.+.+.|+|+|.++...|. -+.+.+.++.+. .-|..+..+. -| +|.==++++++
T Consensus 170 Lf--------t~~Fy~~~~~~L~~~Gi~v~Q~~sp~~~~~~~~~~~~~l~~~F~~v~~y~~~vPty~~g~wgf~~aSk 239 (283)
T PRK00811 170 LF--------TKEFYENCKRALKEGGIFVAQSESPFLQADEIKDLHKKLREVFPIVRPYQAAVPTYPSGIWSFTFASK 239 (283)
T ss_pred HC--------CHHHHHHHHHHCCCCCEEEECCCCHHHCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHEEEEEEC
T ss_conf 34--------59999999985399958999279832069999999999998688668999955568986231167737
No 142
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=98.09 E-value=2.1e-06 Score=62.57 Aligned_cols=159 Identities=21% Similarity=0.305 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHHHCCCC-HHHHCCCEEEEEEEEEEECCC---CCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 98999999999998974983-768536314423767750462---051--223565553101233211012468605664
Q gi|254780875|r 31 DDRQRFFLTNAIVRSLKHES-IHRILGWRDFYNVRLTLSSDT---FEP--RPETELLVDSALAFSLPRIEKRDVVRILDL 104 (264)
Q Consensus 31 ~~~~~~~l~~~i~rr~~g~P-l~YIlg~~~F~~~~f~v~~~v---LIP--RpeTE~lv~~~l~~~~~~~~~~~~~~vLDl 104 (264)
++.....+..+..-...|+| .+-..|.. ||.. +.-+|.. +-- +..|......++... ..-....+|+|+
T Consensus 34 ~~~~~~~w~~L~~avrtG~~~f~~~~G~~-~~~~-~~~~p~~~~~F~~aM~~~s~~~~~~~~~~~---~d~~~~~~vvDv 108 (239)
T pfam00891 34 DPTLLESWAHLKDAVREGGPPFERAFGMP-FFEY-LGADPEFNRVFNRAMAAHSRLVMKKILETA---FDFSGLSSLVDV 108 (239)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHCCCC-HHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCEEEEE
T ss_conf 99999999989999960997466523998-8998-751999999999999888888899999871---376678768996
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCC
Q ss_conf 21421123312222333210013332220024442011000122222222222222210023332011333210012211
Q gi|254780875|r 105 GTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLG 184 (264)
Q Consensus 105 G~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~ 184 (264)
|.|+|.++..+++.+|+.+++-.|. |..++.|+. .+|+++..+|+|+++++ .|+++ -...++..+
T Consensus 109 GGG~G~~~~~i~~~~P~l~~~v~Dl-p~v~~~a~~-------~~rv~~~~gdff~~~P~-aD~y~------l~~vLH~w~ 173 (239)
T pfam00891 109 GGGTGALAAAIVRAYPHIKGIVFDL-PHVIADAPS-------ADRVEFVGGDFFESVPE-ADAIL------LKWVLHDWS 173 (239)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEEC-HHHHHHCCC-------CCCEEEECCCCCCCCCC-CCEEE------EEHHHCCCC
T ss_conf 7981899999999889983898646-877862764-------68548844877778888-51776------401431599
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EE
Q ss_conf 11123575433210112321025689999985378878999-81
Q gi|254780875|r 185 LEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EI 227 (264)
Q Consensus 185 ~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Ei 227 (264)
. +.-.+|++++.+-|+|+|.+++ |.
T Consensus 174 d------------------~~~~~iL~~~~~al~~~grllI~e~ 199 (239)
T pfam00891 174 D------------------EDCVKILKRCYEALPPGGKVIVVEM 199 (239)
T ss_pred H------------------HHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 9------------------9999999999997799988999974
No 143
>PRK03612 spermidine synthase; Provisional
Probab=98.09 E-value=1.2e-05 Score=57.65 Aligned_cols=173 Identities=24% Similarity=0.245 Sum_probs=111.9
Q ss_pred CCCCHHHHCCCEEEEEEEEEEECCCCC-HH---HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-
Q ss_conf 498376853631442376775046205-12---2356555310123321101246860566421421123312222333-
Q gi|254780875|r 47 KHESIHRILGWRDFYNVRLTLSSDTFE-PR---PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPF- 121 (264)
Q Consensus 47 ~g~Pl~YIlg~~~F~~~~f~v~~~vLI-PR---peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~- 121 (264)
+..|.|.|.=..+=.+++++.|-+.-. -| .-.|.||.-++.. ..++.+||=+|-|.|...=.+. ++|+
T Consensus 245 ~~t~yQ~IvvT~~~~~~rLyLdG~lQ~s~~DE~~YhE~LvHp~m~~------~~~p~~VLiiGGGdG~a~revL-k~~~v 317 (516)
T PRK03612 245 EQTPYQRIVVTRRGDDLRLYLNGRLQFSSRDEYRYHEALVHPALAA------SPRARRVLILGGGDGLALREVL-KYPDV 317 (516)
T ss_pred ECCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCC------CCCCCEEEEECCCCCHHHHHHH-CCCCC
T ss_conf 3368718999803796489988923357864888776340402156------9997738998377608799986-48996
Q ss_pred CCCCCCCCCCCCHHHHHHCC---CCCC---CCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 21001333222002444201---1000---1222222222222222---1002333201133321001221111123575
Q gi|254780875|r 122 FKGVGVDISCKALEIAKSNA---VTNG---VSERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDP 192 (264)
Q Consensus 122 ~~v~~~Dis~~al~~A~~N~---~~~~---~~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP 192 (264)
.+|+.+|++++.+++|+++- +.|+ -+.|++++..|-+..+ +++||+|+..+| | |. .|
T Consensus 318 e~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~~~~yDvIi~D~p-----d-----P~----~~ 383 (516)
T PRK03612 318 EQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLPETFDAIIVDLP-----D-----PS----NP 383 (516)
T ss_pred CEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEECC-----C-----CC----CC
T ss_conf 6378995188999999857214444123234996489853789999868887888998189-----9-----79----95
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC-----HHHHHHHHHHHCCCCEE
Q ss_conf 43321011232102568999998537887899981766-----79999999997898058
Q gi|254780875|r 193 RISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN-----QKVDVVRIFESRKLFLV 247 (264)
Q Consensus 193 ~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~-----q~~~v~~ll~~~gf~~v 247 (264)
..+ .-+-+.+...+.+.|+|+|.+...-+.. -.-.+.+-+++.|+...
T Consensus 384 ~~~-------~LYs~eFY~~~~~~L~~~G~~v~qs~Sp~~~~~~f~~i~~T~~~~~~~~~ 436 (516)
T PRK03612 384 ALG-------KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGFATT 436 (516)
T ss_pred CCC-------CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 224-------67539999999984499958999368975522034689999998388041
No 144
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.06 E-value=1.7e-05 Score=56.67 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=84.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C-CCH
Q ss_conf 468605664214211233122223-33210013332220024442011000122222222222222---------2-100
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V-EGL 164 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~-~~~ 164 (264)
+++.+||||||.-|..+-.+++.. +...|+|+|+.+-. .+. ++.|+++|+.+. + ..+
T Consensus 50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~-----------pi~-gv~~i~gDi~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIV-GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC-----------CCC-CCEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 789989980689975789999973999739998653045-----------378-96764034458899999999858987
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--CCCHHHHHHHHHHHC
Q ss_conf 233320113332100122111112357543321011232102568999998537887899981--766799999999978
Q gi|254780875|r 165 FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--GYNQKVDVVRIFESR 242 (264)
Q Consensus 165 fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g~~q~~~v~~ll~~~ 242 (264)
||+|+|. +.|++.... .++. ..-++.....+..+.++|+|||.+++-+ |. ..+++.+.+++
T Consensus 118 ~DvVlSD-----------mAPn~tG~~---~~D~-~~s~~L~~~al~~a~~~Lk~gG~fv~K~F~G~-~~~~~~~~~k~- 180 (209)
T PRK11188 118 VDVVMSD-----------MAPNMSGTP---AVDI-PRAMYLVELALDMCRQVLAPGGSFVVKVFQGE-GFDEYLREIRS- 180 (209)
T ss_pred CCEEECC-----------CCCCCCCCH---HHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-CHHHHHHHHHC-
T ss_conf 3089666-----------665667870---3359-99999999999999986267988999996487-99999999970-
Q ss_pred CCCEEEEEECCCCC----CEEEEEE
Q ss_conf 98058998056899----7599997
Q gi|254780875|r 243 KLFLVNAFKDYGGN----DRVLLFC 263 (264)
Q Consensus 243 gf~~v~~~kD~~g~----~R~vi~~ 263 (264)
-|..|.+.|--+-+ +.++++.
T Consensus 181 ~F~~V~~~KP~ASR~~S~E~Ylv~~ 205 (209)
T PRK11188 181 LFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred CCCEEEEECCCCCCCCCCEEEEEEE
T ss_conf 2597889998674667854677870
No 145
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=98.03 E-value=1.8e-06 Score=63.02 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=80.6
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHH
Q ss_conf 012468605664214211233122223-33210013332220024442011000122222222222222--210023332
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIV 169 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~Iv 169 (264)
.+-....+.||+|||++-.+++++... +...|.|.|.|+..+.++++......+. ++.+.||+..+- .++.||.|.
T Consensus 41 m~v~~G~~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs~nml~~~~~k~~~~~~~-~~~l~hGnam~lP~~~~~fdyvt 119 (231)
T TIGR02752 41 MNVQKGKKALDVCCGTADWAIALAEAVGKEGEVKGLDFSENMLSVGKQKVKDAKLS-NVELVHGNAMELPYDDNSFDYVT 119 (231)
T ss_pred HHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHH-HEEEECCCHHCCCCCCCCCCEEE
T ss_conf 65640412112103733788898886177771674003588999999888754320-02223052001787766612577
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 01133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
- .. .+++ ..+|-.++++..+..+|||.++.
T Consensus 120 i-----Gf--------Glrn-------------vPdy~~vl~em~rv~kPGG~~~C 149 (231)
T TIGR02752 120 I-----GF--------GLRN-------------VPDYMTVLKEMARVVKPGGKVVC 149 (231)
T ss_pred E-----CC--------CCCC-------------HHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 5-----25--------5123-------------02699999998886279971798
No 146
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=98.02 E-value=9.8e-06 Score=58.18 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=110.2
Q ss_pred CCCHHHH-CCCEEEEEEEEEEECCCCCH----HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-
Q ss_conf 9837685-36314423767750462051----22356555310123321101246860566421421123312222333-
Q gi|254780875|r 48 HESIHRI-LGWRDFYNVRLTLSSDTFEP----RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPF- 121 (264)
Q Consensus 48 g~Pl~YI-lg~~~F~~~~f~v~~~vLIP----RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~- 121 (264)
..|.|.| +-+...+|.-+..+-.+..- --..|.|+.-++.. ..++.+||=+|-|.|.++=.+.+. |+
T Consensus 27 ~S~yQ~I~v~~s~~~G~~L~LDg~~q~te~De~~YhE~lvH~~~~~------~~~pk~VLIiGGGDG~~~rEvlk~-~~v 99 (240)
T pfam01564 27 KSEYQDIEIFESKTFGKILVLDGRVQLTERDEFIYHEMIAHVPLCS------HPNPKKVLIIGGGDGGALREVVKH-PSV 99 (240)
T ss_pred CCCCCEEEEEECCCCCCEEEECCEEEEECCCHHHHHHHHHCCHHHH------CCCCCEEEEECCCCHHHHHHHHCC-CCC
T ss_conf 8998279999987757689999977650566888888874537765------888553676458657999998567-995
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCC---CCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 210013332220024442011000---1222222222222222---1002333201133321001221111123575433
Q gi|254780875|r 122 FKGVGVDISCKALEIAKSNAVTNG---VSERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRIS 195 (264)
Q Consensus 122 ~~v~~~Dis~~al~~A~~N~~~~~---~~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~A 195 (264)
.+|+.+||+++.+++|++...... -+.|++++.+|.++.+ .++||+|+...| + |. -|...
T Consensus 100 ~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvII~D~~-----D-----P~----~~~~~ 165 (240)
T pfam01564 100 EKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVIIVDST-----D-----PV----GPAEN 165 (240)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEECC-----C-----CC----CHHHH
T ss_conf 3899975788999999998798524347985599981689999857254458999589-----9-----76----53344
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCH--HH---HHHHHHHHCCCCEEEEE
Q ss_conf 210112321025689999985378878999817667--99---99999997898058998
Q gi|254780875|r 196 LDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQ--KV---DVVRIFESRKLFLVNAF 250 (264)
Q Consensus 196 L~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q--~~---~v~~ll~~~gf~~v~~~ 250 (264)
|| -+.+.+.+.+.|+|+|.++...+... .. .+.+.+++. |..+..+
T Consensus 166 Lf--------s~eFy~~~~~~L~~~Gi~v~Q~~sp~~~~~~~~~i~~~l~~~-F~~v~~y 216 (240)
T pfam01564 166 LF--------SKEFYDLLKRALKEDGVFVTQAESPWLHLELIINILKNGKKV-FPVVMPY 216 (240)
T ss_pred HH--------HHHHHHHHHHHCCCCCEEEEECCCHHHCHHHHHHHHHHHHHH-CCCCEEE
T ss_conf 42--------299999999865999789992488343799999999999977-8982699
No 147
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.01 E-value=8.8e-07 Score=65.07 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=60.5
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHC
Q ss_conf 124686056642142112331222233321001333222002444201100012222222222222221--002333201
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSN 171 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsN 171 (264)
+..+.-.|||+|+|.|++.-.|+.. ..+++++|+++..++..++..... ++++++++|.+..-- .....||+|
T Consensus 10 ~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~---~n~~ii~~D~L~~~~~~~~~~~iv~N 84 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYKVVGN 84 (169)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--CCCCCEEECCHHHHHHHHHHHCCC---CCEEEEECCHHCCCCCCCCCCEEEEC
T ss_conf 8999497999689702999999973--163531637889999999864107---97799957111255311587369934
Q ss_pred CHH-HHHH
Q ss_conf 133-3210
Q gi|254780875|r 172 PPY-IESV 178 (264)
Q Consensus 172 PPY-I~~~ 178 (264)
.|| |.+.
T Consensus 85 LPY~Iss~ 92 (169)
T smart00650 85 LPYNISTP 92 (169)
T ss_pred CCCCCHHH
T ss_conf 76301189
No 148
>PHA02056 putative methyltransferase
Probab=98.01 E-value=1.4e-06 Score=63.77 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHCCHH--
Q ss_conf 8605664214211233122223332100133322200244420110001222222222222222-1002333201133--
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-EGLFDVIVSNPPY-- 174 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-~~~fD~IvsNPPY-- 174 (264)
.-+|+|||.|-|-++-.++..+...++++++.++.-+.+-++=. -..+++++|.|+.. .++||+.+||||+
T Consensus 65 tG~iiDLCAGIG~LSy~~~~r~kp~~ivCVErN~~y~~vGkkil------PeAtWI~~Dv~~~~~~~~FD~aIsNPPFG~ 138 (279)
T PHA02056 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCC------CCCEEEECCEECCCCCCCEEEEECCCCCCC
T ss_conf 85388821461235799985068863589940857988643207------640277323130356662004533899764
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE---CC-----------CHHHHHHHHHH
Q ss_conf 32100122111112357543321011232102568999998537887899981---76-----------67999999999
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI---GY-----------NQKVDVVRIFE 240 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi---g~-----------~q~~~v~~ll~ 240 (264)
|...+.+..+ .| .|-+|=-+++..+. .+..-|.+++-- |+ ....+..++.+
T Consensus 139 i~~~~sK~~~----~y----------tg~~FE~~Vi~~a~-~~Ad~G~FIiPqmSA~F~YSG~~~y~~~~~s~k~~Kf~~ 203 (279)
T PHA02056 139 INTTDTKDVF----EY----------TGGEFEFKVMTLGQ-KFADVGYFIVPSGSAGFAYSGRPYYDGTMKSNKYLKWSK 203 (279)
T ss_pred CCCCCCCCCC----CC----------CCCCEEEEEEHHHH-HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 3333357886----64----------57611577324566-763063499614666767578733366666426676786
Q ss_pred HCCC
Q ss_conf 7898
Q gi|254780875|r 241 SRKL 244 (264)
Q Consensus 241 ~~gf 244 (264)
+.|+
T Consensus 204 qTGl 207 (279)
T PHA02056 204 QTGL 207 (279)
T ss_pred HCCE
T ss_conf 4474
No 149
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=98.00 E-value=3.5e-06 Score=61.15 Aligned_cols=85 Identities=27% Similarity=0.271 Sum_probs=66.5
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCHHHHHH
Q ss_conf 12468605664214211233122223332-10013332220024442011000122222222222222---210023332
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFF-KGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---VEGLFDVIV 169 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~-~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---~~~~fD~Iv 169 (264)
+...+.++||.=+|||.=+|-.++|.++. +|++-|+|+.|++..++|++.|++++.+.+.++|.-.. ..++||+|=
T Consensus 46 ~~~~~~~iLDalsasGiR~iRya~E~~~~~~V~~NDi~~~a~~~i~~N~~lN~~~~~~~~~~~DAn~lm~~~~~~fD~ID 125 (375)
T pfam02005 46 KLGRGIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVENIVVINGDDANMLMRENHRRFDVID 125 (375)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCEEE
T ss_conf 02588669754675419999999746998669995599899999999888659987378754759999985588675686
Q ss_pred HCC-----HHHHHH
Q ss_conf 011-----333210
Q gi|254780875|r 170 SNP-----PYIESV 178 (264)
Q Consensus 170 sNP-----PYI~~~ 178 (264)
-.| ||++..
T Consensus 126 lDPfGSp~pfldsA 139 (375)
T pfam02005 126 LDPFGSPAPFLDSA 139 (375)
T ss_pred ECCCCCCCHHHHHH
T ss_conf 78999921779999
No 150
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=97.98 E-value=4.1e-05 Score=54.07 Aligned_cols=138 Identities=18% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------CCCHHHH
Q ss_conf 6860566421421123312222333210013332220024442011000122222222222222---------2100233
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------VEGLFDV 167 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~~~~fD~ 167 (264)
++.+||||||+.|..+-.+++..++.+|+|+|+.+.. .. ..+.++++|..+. ..++||+
T Consensus 21 ~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~~-----------~~-~~~~~i~gDi~~~~~~~~i~~~~~~~~Dl 88 (176)
T pfam01728 21 GGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPMK-----------PI-QGVTFLRGDITDPETLEKLLELLPGKVDL 88 (176)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCC-----------CC-CCCEEECCCCCCHHHHHHHHHHCCCCCCE
T ss_conf 9999999689997699999985668739999734465-----------67-78456516766878999999973998468
Q ss_pred HHHCC-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--CCCHHHHHHHHHHHCCC
Q ss_conf 32011-3332100122111112357543321011232102568999998537887899981--76679999999997898
Q gi|254780875|r 168 IVSNP-PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--GYNQKVDVVRIFESRKL 244 (264)
Q Consensus 168 IvsNP-PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g~~q~~~v~~ll~~~gf 244 (264)
|+|.- |.+... ...+ +.. -.......+..+..+|++||.+++-+ |.....++...++. .|
T Consensus 89 V~sD~a~~~~g~--~~~d-~~~-------------s~~L~~~~l~~a~~~L~~gG~fv~K~f~~~~~~~~l~~~l~~-~F 151 (176)
T pfam01728 89 VLCDGAPNVSGL--ENTD-SFI-------------SLRLVLAALLLALEVLRPGGNFVVKLFKGFEFSVELLYKLKK-GF 151 (176)
T ss_pred EEECCCCCCCCC--CCHH-HHH-------------HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHH-CC
T ss_conf 973366565677--3347-899-------------999999999999998243763999998278764999999983-17
Q ss_pred CEEEEEEC----CCCCCEEEEEE
Q ss_conf 05899805----68997599997
Q gi|254780875|r 245 FLVNAFKD----YGGNDRVLLFC 263 (264)
Q Consensus 245 ~~v~~~kD----~~g~~R~vi~~ 263 (264)
..+.+.|- -.+.++++++.
T Consensus 152 ~~v~~~KP~aSR~~s~E~Yiv~~ 174 (176)
T pfam01728 152 EKVGIFKPPASRPSSSEEYLVCL 174 (176)
T ss_pred CEEEEECCCCCCCCCCEEEEEEC
T ss_conf 88999868997998866999962
No 151
>KOG2671 consensus
Probab=97.97 E-value=5.2e-06 Score=59.99 Aligned_cols=126 Identities=22% Similarity=0.204 Sum_probs=80.6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-------HHHHCCCCCCCCCC-CCCCCCCCCCCC---CC
Q ss_conf 24686056642142112331222233321001333222002-------44420110001222-222222222222---10
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALE-------IAKSNAVTNGVSER-FDTLQSDWFSSV---EG 163 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~-------~A~~N~~~~~~~~~-i~~~~~d~~~~~---~~ 163 (264)
.+++--|.|-..|||.+.++.|. -++.|.|.||+-..+. -.+.|.+.+|...+ +.++.+|.-... .-
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~--FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671 206 VKPGDIVYDPFVGTGSLLVSAAH--FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred CCCCCEEECCCCCCCCEEEEHHH--HCCEEECCCCCHHEEECCCCCCCCHHHHHHHHCCCCHHHHEEEECCCCCCHHHCC
T ss_conf 67998874476566742666223--0635641245312011345777426676877477532032045105676301032
Q ss_pred HHHHHHHCCHH-HHHHCCCC-----C----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 02333201133-32100122-----1----111123575433210112321025689999985378878999
Q gi|254780875|r 164 LFDVIVSNPPY-IESVIVDC-----L----GLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 164 ~fD~IvsNPPY-I~~~~~~~-----l----~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
.||.|||.||| |....-.. . ...-.+|=|..-.++=. ..+..++..+.+.|..||.+.+
T Consensus 284 ~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~---~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671 284 KFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLS---SLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred EEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH---HHHHHHHHHHHHHHHCCCEEEE
T ss_conf 33378727981145666654145765575212433557764466799---9975088763766302855898
No 152
>PRK06922 hypothetical protein; Provisional
Probab=97.97 E-value=8.5e-06 Score=58.58 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHCC
Q ss_conf 6860566421421123312222333210013332220024442011000122222222222222----210023332011
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEGLFDVIVSNP 172 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~~fD~IvsNP 172 (264)
.+-+++|+|.|-|+..=.+-.+.|++.++|+|+|..-++--++...+-+- .-++.+||.+.. -++..|-|++--
T Consensus 420 ~G~~ivdiG~GGGVMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~e~k--sW~V~~gDAL~l~d~f~~eSvdTiv~sS 497 (679)
T PRK06922 420 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYSS 497 (679)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCC--CCEEECCCCCCCHHHCCCCCCCEEEEHH
T ss_conf 47679986699621487667658998614666608899999887775489--8423214303615434756664687427
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 333210012211111235754332101123210256899999853788789998176
Q gi|254780875|r 173 PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY 229 (264)
Q Consensus 173 PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~ 229 (264)
|-.+-....+.+-+.|. -..+++.+..+...|+|||.+++-=|-
T Consensus 498 --IlHElfSYie~dGkkfN-----------~~vi~~~l~Saf~vLkpGGRiIIRDGI 541 (679)
T PRK06922 498 --ILHELFSYIEYEGKKFN-----------HEVIKKGLQSAYEVLKPGGRIIIRDGI 541 (679)
T ss_pred --HHHHHHHHCCCCCCCCC-----------HHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf --78888863456671347-----------999999999999872888649994575
No 153
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=97.93 E-value=2e-06 Score=62.77 Aligned_cols=127 Identities=19% Similarity=0.238 Sum_probs=89.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCC---------EEEEEEEEEEECCCCCHH-HH-------H---HHHHHHH
Q ss_conf 48858989999999999989749837685363---------144237677504620512-23-------5---6555310
Q gi|254780875|r 26 PDSVLDDRQRFFLTNAIVRSLKHESIHRILGW---------RDFYNVRLTLSSDTFEPR-PE-------T---ELLVDSA 85 (264)
Q Consensus 26 ~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~---------~~F~~~~f~v~~~vLIPR-pe-------T---E~lv~~~ 85 (264)
..+.|++.+.....++-.++.+..==--|+|. ++|-.-++.|+-..++=| +| + +-+++||
T Consensus 116 YHk~Ldd~W~~~A~~L~~~L~~~~l~v~lIGRa~k~Ki~l~~DYv~E~L~V~gr~~~YrQ~E~sFtQPNa~vn~kMLeWA 195 (361)
T TIGR02143 116 YHKQLDDEWRQAAEALKDKLRAQGLDVNLIGRARKKKIVLDRDYVDETLPVNGREFIYRQVENSFTQPNAAVNQKMLEWA 195 (361)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 06772178999999999998634785689973368655510353036620388078998637872475189999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12332110124686056642142112331222233321001333222002444201100012222222222222
Q gi|254780875|r 86 LAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159 (264)
Q Consensus 86 l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~ 159 (264)
++.. +..+..=.|||-||.|.-+|+||..+. +|.|++||+.+++.|+.|++.|+++| |.++.-+..+
T Consensus 196 ~~~~----~~~~g~DLLELYCGNGNFsLaLA~~f~--rVLATEiaK~SV~aAq~Ni~~N~idN-v~i~RlSAEE 262 (361)
T TIGR02143 196 LEVT----QNSKGMDLLELYCGNGNFSLALAQNFE--RVLATEIAKPSVNAAQYNIAANKIDN-VQIIRLSAEE 262 (361)
T ss_pred HHHH----CCCCCCCCCEEECCCCCCHHHHHHHHH--HHHHHHCCCCCHHHHHHHHHCCCCCC-EEHHHHHHHH
T ss_conf 9983----588887201000267531044565333--45543024024799999987179883-1010232799
No 154
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=97.93 E-value=2.7e-05 Score=55.29 Aligned_cols=119 Identities=20% Similarity=0.330 Sum_probs=78.6
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHH
Q ss_conf 46860566421421123312222333210013332220024442011000122222222222222210023332011333
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYI 175 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI 175 (264)
....++||+|.|-|.+...+|..+. +|+++|.|+.+...-++. |.. + +-..+|. ....+||+|-|.
T Consensus 93 ~~~~~LLDlGAGdG~VT~~la~~F~--~V~aTE~S~~Mr~rL~~r----gf~--v-l~~~~~~-~~~~~fDvIscL---- 158 (265)
T pfam05219 93 QEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----NYN--V-LTEIEWQ-ETDVNLDLILCL---- 158 (265)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC--EEEEEECCHHHHHHHHHC----CCE--E-EEEHHCC-CCCCCEEEEHHH----
T ss_conf 7766478835899789999997523--588872789999999975----986--8-7501203-568744554222----
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE----------EECC----------------
Q ss_conf 21001221111123575433210112321025689999985378878999----------8176----------------
Q gi|254780875|r 176 ESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV----------EIGY---------------- 229 (264)
Q Consensus 176 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l----------Eig~---------------- 229 (264)
+-++ +.++| ..+++...+.|+|+|.+++ |.+.
T Consensus 159 -----NvLD---Rc~~P--------------~~LL~~i~~~L~P~G~lilAvVlPf~pyVE~~~~~~~~p~e~l~~~g~~ 216 (265)
T pfam05219 159 -----NLLD---RCFDP--------------FKLLEDIHLALAPNGRVIVALVLPYMHYVETNTGSHLPPRPLLENNGAS 216 (265)
T ss_pred -----HHHH---CCCCH--------------HHHHHHHHHHCCCCCEEEEEEEECCCCEEECCCCCCCCCHHHCCCCCCC
T ss_conf -----4453---13886--------------9999999972499967999998256201775898779952113789980
Q ss_pred --CHHHHHHHHHHHCCCCEEEEE
Q ss_conf --679999999997898058998
Q gi|254780875|r 230 --NQKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 230 --~q~~~v~~ll~~~gf~~v~~~ 250 (264)
.|...+.+.|...||......
T Consensus 217 ~E~~v~~l~~vl~p~GF~v~~~t 239 (265)
T pfam05219 217 FEEEVARFMEVFENAGFRVEAWT 239 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99999999998760795788873
No 155
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=6.3e-06 Score=59.43 Aligned_cols=165 Identities=21% Similarity=0.196 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 620512235655531012332110124686056642142112331222233--321001333222002444201100012
Q gi|254780875|r 70 DTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP--FFKGVGVDISCKALEIAKSNAVTNGVS 147 (264)
Q Consensus 70 ~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~--~~~v~~~Dis~~al~~A~~N~~~~~~~ 147 (264)
|.+++.-++-.++-.++ ...++-+|||+|.+-|.=+.-+|...+ +..|+|.|+|+.-++..++|+++.|+.
T Consensus 136 G~~~vQd~sS~l~a~~L-------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~ 208 (355)
T COG0144 136 GLIYVQDEASQLPALVL-------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR 208 (355)
T ss_pred EEEEEECHHHHHHHHHC-------CCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 48999677876679971-------99997968880799976999999966899876997449878999999999971998
Q ss_pred CCCCCCCCCCC--C-CC--CCHHHHHHHCCHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCC
Q ss_conf 22222222222--2-22--1002333201133321001221111123-57543321011232-10256899999853788
Q gi|254780875|r 148 ERFDTLQSDWF--S-SV--EGLFDVIVSNPPYIESVIVDCLGLEVRD-FDPRISLDGGIDGL-SHYRTIADGVSRHLNKD 220 (264)
Q Consensus 148 ~~i~~~~~d~~--~-~~--~~~fD~IvsNPPYI~~~~~~~l~~~v~~-~EP~~AL~gg~dGl-~~~~~ii~~~~~~L~~~ 220 (264)
+ +...+.|-. . .. .++||.|+.-+|=-..+.+. -.|+++. +.|. . ...+ ..-++|+..+.++|+||
T Consensus 209 n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~ir-r~Pd~~~~~~~~-~----i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 209 N-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIR-RDPDVKWRRTPE-D----IAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred C-EEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEC-CCCCHHCCCCHH-H----HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 3-4899513301431134557778599879998771133-581232038999-9----9999999999999999844879
Q ss_pred CEEEE---EECCCHHHH-HHHHHHHC-CCCEEE
Q ss_conf 78999---817667999-99999978-980589
Q gi|254780875|r 221 GLCSV---EIGYNQKVD-VVRIFESR-KLFLVN 248 (264)
Q Consensus 221 G~l~l---Eig~~q~~~-v~~ll~~~-gf~~v~ 248 (264)
|.|+. -+.....+. |..++++. +|..+.
T Consensus 282 G~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 282 GVLVYSTCSLTPEENEEVVERFLERHPDFELEP 314 (355)
T ss_pred CEEEEEECCCCHHCCHHHHHHHHHHCCCCEEEC
T ss_conf 889999023750028899999998589954411
No 156
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=97.90 E-value=1.1e-06 Score=64.34 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=85.9
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCC--CHHH
Q ss_conf 24686056642142112331222233-32100133322200244420110-----0012222222222222221--0023
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVT-----NGVSERFDTLQSDWFSSVE--GLFD 166 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~-----~~~~~~i~~~~~d~~~~~~--~~fD 166 (264)
-.+..+|||+|||||-.+..+|.-+. +-.|+++|-=+.-...|++|.++ +++ +||.+..||-..... .+||
T Consensus 80 L~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~-~NV~v~~GDG~~G~~~~APYd 158 (228)
T TIGR00080 80 LKPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGL-DNVIVIEGDGRQGWEEKAPYD 158 (228)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHCCCCC
T ss_conf 1403556650478558999999987139718998535788999998765431444068-865899778865710248835
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHCCCC
Q ss_conf 3320113332100122111112357543321011232102568999998537887899981766-799999999978980
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN-QKVDVVRIFESRKLF 245 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~-q~~~v~~ll~~~gf~ 245 (264)
-|.. +. -+++| -+.++ +-|+.||.|++-++.. ..+.+.++-+.+ -
T Consensus 159 ~I~~------~A----A~k~i------------------P~AL~----~QL~eGG~L~~Pv~~~d~~Q~l~~~~k~n-n- 204 (228)
T TIGR00080 159 AILV------TA----AAKEI------------------PKALI----DQLEEGGILVLPVGEVDEEQVLKRVEKRN-N- 204 (228)
T ss_pred EEEE------EC----CCCCC------------------CHHHH----HHHHHCCEEEECCEEECCCEEEEEEEEEC-C-
T ss_conf 2775------23----78987------------------65789----99972898862000006753799998708-9-
Q ss_pred EEEEEECCCCCCEEE
Q ss_conf 589980568997599
Q gi|254780875|r 246 LVNAFKDYGGNDRVL 260 (264)
Q Consensus 246 ~v~~~kD~~g~~R~v 260 (264)
-++..|.-+..+||
T Consensus 205 -~~~~~k~~E~v~FV 218 (228)
T TIGR00080 205 -GEIIIKVVEKVLFV 218 (228)
T ss_pred -CEEEEEECCCEEEE
T ss_conf -60675311766775
No 157
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.90 E-value=5.3e-06 Score=59.92 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 6056642142112331222233321001333222002444201100012222222222222221002333201
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSN 171 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsN 171 (264)
-.+.|+|+|||.++...|+. .-+|+|++.+|+-..+|++|.+.+|. ++++++.+|....--.+-|+|+|-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~fe~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDFENADVVICE 103 (252)
T ss_pred HCEEECCCCCCHHHHHHHHH--HCEEEEEECCCHHHHHHHHCCCCCCC-CCEEEEECCCCCCCCCCCCEEHHH
T ss_conf 10563468863288988753--20278874180787776505777887-646898055321332345340877
No 158
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.89 E-value=7.4e-06 Score=59.00 Aligned_cols=82 Identities=26% Similarity=0.317 Sum_probs=64.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCHHHHHHHCC
Q ss_conf 46860566421421123312222333210013332220024442011000122222222222222---210023332011
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---VEGLFDVIVSNP 172 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---~~~~fD~IvsNP 172 (264)
+.+.++||.=+|||.=++-.++|.+..+|++-|+|++|+++.++|++.|+++ ++++.+.|.-.. ..++||+|=-.|
T Consensus 50 ~~~~~ilDalsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-~~~v~~~dAn~lm~~~~~~fD~IDlDP 128 (376)
T PRK04338 50 KRRKSVLDALSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLELNGLE-NAEVFNEDANVLLHENERKFDVVDIDP 128 (376)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHCCCCCCEEEECC
T ss_conf 0697687406765499999987279987999569999999999999982998-269813248999983787587786789
Q ss_pred -----HHHHHH
Q ss_conf -----333210
Q gi|254780875|r 173 -----PYIESV 178 (264)
Q Consensus 173 -----PYI~~~ 178 (264)
||++..
T Consensus 129 fGSp~pflDsA 139 (376)
T PRK04338 129 FGSPAPFLDSA 139 (376)
T ss_pred CCCCCHHHHHH
T ss_conf 99920879999
No 159
>pfam12147 Hydrolase_5 Putative lysophospholipase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.88 E-value=4.3e-05 Score=53.95 Aligned_cols=199 Identities=19% Similarity=0.139 Sum_probs=123.8
Q ss_pred HHHHHHHCCCCHHHHCCCEEEEEEEEEEE--C------CCCCHH---------------HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99998974983768536314423767750--4------620512---------------235655531012332110124
Q gi|254780875|r 40 NAIVRSLKHESIHRILGWRDFYNVRLTLS--S------DTFEPR---------------PETELLVDSALAFSLPRIEKR 96 (264)
Q Consensus 40 ~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~--~------~vLIPR---------------peTE~lv~~~l~~~~~~~~~~ 96 (264)
+.+.+..+|.-+-+-+|.-.=-.+++--. | |-+|-| ---|.+++.++... ....
T Consensus 58 ~~~g~lS~Gi~lG~~tGFDSGstLDYVYrNqp~G~~~~Gr~IDr~YLnaiGWrGIRqRk~hl~~li~~ai~~l---~~~g 134 (311)
T pfam12147 58 RLGGRLSEGIRLGLDTGFDSGSTLDYVYRNQPRGRGPLGRLIDRNYLDAIGWRGIRQRKLHLEELLRYAIARL---RASG 134 (311)
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCC
T ss_conf 8621113435730325767786303554157777662466777865510547799999999999999999999---9679
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHH
Q ss_conf 6860566421421123312222333--21001333222002444201100012222222222222221002333201133
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPF--FKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPY 174 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~--~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPY 174 (264)
.+.+|||+-||.|--.+-.....|. ..+..=|.|+.-++..++-++..|+++.+.|.++|.|+.-. +-
T Consensus 135 ~~v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~--la-------- 204 (311)
T pfam12147 135 RPVRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDAFDPAS--LA-------- 204 (311)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHH--HH--------
T ss_conf 95699985168616299999857988745885148887799999999974962000674057679767--63--------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHCCCCCEEEEEEC----------------------
Q ss_conf 32100122111112357543321011232----1025689999985378878999817----------------------
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGL----SHYRTIADGVSRHLNKDGLCSVEIG---------------------- 228 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl----~~~~~ii~~~~~~L~~~G~l~lEig---------------------- 228 (264)
.+ +.-|.++..+|---| +.++.-+......+.++|.|+.---
T Consensus 205 -------~l-----~p~P~l~IVSGLyELF~dN~lv~~sl~Gl~~ai~~gGyLIYTgQPWHPQLe~IAr~LtSHr~G~aW 272 (311)
T pfam12147 205 -------AL-----TPAPTLAIVSGLYELFPDNDLVRRSLAGLAQAVEPGGYLIYTGQPWHPQLEMIARALTSHRGGEAW 272 (311)
T ss_pred -------CC-----CCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf -------26-----999978997012663687299999999999750899789982998866799999997256688867
Q ss_pred ----CCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf ----667999999999789805899805689975999979
Q gi|254780875|r 229 ----YNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 229 ----~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
..| .+.-++++..||..+...-|-.|+=-|.+++|
T Consensus 273 VMRrRsQ-~EmD~Lv~~aGf~K~~q~iD~~GIFTVSlA~r 311 (311)
T pfam12147 273 VMRRRSQ-AEMDELVEAAGFRKIAQRIDEWGIFTVSLARR 311 (311)
T ss_pred EEEECCH-HHHHHHHHHCCCCHHHHEECCCCEEEEEEECC
T ss_conf 6773679-99999999819721555023677068986329
No 160
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=97.81 E-value=1.4e-05 Score=57.15 Aligned_cols=106 Identities=23% Similarity=0.221 Sum_probs=76.3
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCH
Q ss_conf 468605664214211233122223--332100133322200244420110001222222222222222100233320113
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPP 173 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPP 173 (264)
.+...|-||||.+|+..+++-+.. ++.+++|+|-|..+++-|++..+.++-..-+++.++|+.+---+.-..++-|
T Consensus 60 lp~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS~pM~~~~~~~~~~y~~~~Pv~~~~~D~~~v~~~~AS~~~L~-- 137 (247)
T TIGR00740 60 LPKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNSMPMLERCREHIKAYKNAIPVEVLCMDIREVEIKNASMVVLN-- 137 (247)
T ss_pred CCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHH--
T ss_conf 688741223343235776653046878537988418888999999999874247882320102456666554688788--
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 3321001221111123575433210112321025689999985378878999
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
=...-+.|+-+ ..+++...+-|+|||.|++
T Consensus 138 ----F~LQFl~P~~R------------------~~LL~KIY~~L~~nGvL~l 167 (247)
T TIGR00740 138 ----FTLQFLRPEER------------------EALLKKIYNGLNPNGVLVL 167 (247)
T ss_pred ----HHHHCCCCHHH------------------HHHHHHHHHHCCCCCEEEE
T ss_conf ----77604782347------------------9999998741077866886
No 161
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=97.79 E-value=1.4e-05 Score=57.21 Aligned_cols=120 Identities=17% Similarity=0.176 Sum_probs=69.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC---------CCCCCCCCCCCCCCC------
Q ss_conf 46860566421421123312222333210013332220024442011000---------122222222222222------
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG---------VSERFDTLQSDWFSS------ 160 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~---------~~~~i~~~~~d~~~~------ 160 (264)
.++.+|||+|||-|.=..- .....-..++|+|||+.+++-|++-..... ..-...|..+|.+..
T Consensus 62 ~~~~~VLDl~CGkGGDL~K-w~~~~i~~~vgiDis~~sI~~A~~RY~~~~~~~~~~~~~~~f~~~f~~~D~~~~~l~~~~ 140 (327)
T pfam03291 62 KPKRKVLDLDCGKGGDLEK-YFKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVF 140 (327)
T ss_pred CCCCEEEEECCCCCCCHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHC
T ss_conf 8898799836866445788-974798689996689999999999999864211444456675001231562156787753
Q ss_pred --CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH
Q ss_conf --210023332011333210012211111235754332101123210256899999853788789998176679999999
Q gi|254780875|r 161 --VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRI 238 (264)
Q Consensus 161 --~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~l 238 (264)
-..+||+|-|.= .+|. -||.. +-.+.++.++...|+|||.++--+-. +..+.+.
T Consensus 141 ~~~~~~FDvVS~QF------AiHY------~Fese----------~~a~~~l~Nvs~~Lk~GG~FIGT~~d--~~~i~~~ 196 (327)
T pfam03291 141 EPGQRKFDIVSWQF------AIHY------SFESE----------EKARTMLRNLAELLASGGKFIGTTPD--GDFIIKK 196 (327)
T ss_pred CCCCCCCCEEEHHH------HHHH------HHCCH----------HHHHHHHHHHHHHCCCCCEEEEEECC--HHHHHHH
T ss_conf 57788503775178------7898------76489----------99999999999860589889999667--8999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780875|r 239 FE 240 (264)
Q Consensus 239 l~ 240 (264)
++
T Consensus 197 l~ 198 (327)
T pfam03291 197 LT 198 (327)
T ss_pred HH
T ss_conf 98
No 162
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=97.77 E-value=1.9e-05 Score=56.27 Aligned_cols=168 Identities=20% Similarity=0.265 Sum_probs=108.3
Q ss_pred HHHCCCEEEEEEEEE---EECCC----CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 685363144237677---50462----05122356555310123321101246860566421421123312222333210
Q gi|254780875|r 52 HRILGWRDFYNVRLT---LSSDT----FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKG 124 (264)
Q Consensus 52 ~YIlg~~~F~~~~f~---v~~~v----LIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v 124 (264)
|-|-|++.|-|.-=+ .+..- =|-|.-..+-++..++ +.+-..-.+.+|+|-|-|=|+-++.+.+|..++
T Consensus 101 ~~VRG~~~F~~~VP~PP~TRED~LyyE~~HRSN~~l~~~LL~~----~A~L~~V~~lIDVGGGIGDI~AAl~~~FP~L~~ 176 (306)
T TIGR02716 101 DVVRGKKDFKSIVPYPPVTREDSLYYEELHRSNIKLAIELLLK----RAKLDDVKKLIDVGGGIGDIAAALLKAFPELDV 176 (306)
T ss_pred HHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCE
T ss_conf 6524531440006865887765404667767689999999998----751631325433388877899999973775232
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01333222002444201100012222222222222221002333-20113332100122111112357543321011232
Q gi|254780875|r 125 VGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVI-VSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGL 203 (264)
Q Consensus 125 ~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~I-vsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl 203 (264)
|-+-. |.|+++.++|+..-|+.+|+.-+--|+.......-|-| +|-==| |..+
T Consensus 177 T~~NL-P~A~DLV~EN~A~KG~ADR~~~~A~D~Y~E~YP~~DAVLF~RILY-----------------~~N~-------- 230 (306)
T TIGR02716 177 TLLNL-PSALDLVRENVAEKGLADRIRGVAVDIYKESYPEADAVLFSRILY-----------------SANE-------- 230 (306)
T ss_pred EEECC-CCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH-----------------HHHH--------
T ss_conf 31205-405567766554145100466315650338757711656778876-----------------4467--------
Q ss_pred CCHHHHHHHHHHHCCCCCEEEE---EE-------------------------CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 1025689999985378878999---81-------------------------7667999999999789805899
Q gi|254780875|r 204 SHYRTIADGVSRHLNKDGLCSV---EI-------------------------GYNQKVDVVRIFESRKLFLVNA 249 (264)
Q Consensus 204 ~~~~~ii~~~~~~L~~~G~l~l---Ei-------------------------g~~q~~~v~~ll~~~gf~~v~~ 249 (264)
++-.-+++.+..-|..||.+.+ -| ++.....-.++|++.||++|..
T Consensus 231 Ql~T~l~~KAyDAl~SGGR~LILDMVI~DP~~PNyDYL~HY~~~~GM~FSVL~FK~~A~Y~~~L~~~Gy~DVTl 304 (306)
T TIGR02716 231 QLSTILLKKAYDALRSGGRLLILDMVIDDPENPNYDYLSHYLLAIGMGFSVLEFKDQAVYKDLLRSLGYKDVTL 304 (306)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHCCCCEEEC
T ss_conf 89999999887522578807865434318567771468999987166610121100230079998559720101
No 163
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=97.77 E-value=3.5e-05 Score=54.55 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=87.8
Q ss_pred CCCEEEEECCCCCCCCC---CC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCC-CCCCCCCCCCCCCCCCC--CHHHHHHH
Q ss_conf 86056642142112331---22-22333210013332220024442011000-12222222222222221--00233320
Q gi|254780875|r 98 VVRILDLGTGTGAVCLA---LL-KESPFFKGVGVDISCKALEIAKSNAVTNG-VSERFDTLQSDWFSSVE--GLFDVIVS 170 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~---la-~~~~~~~v~~~Dis~~al~~A~~N~~~~~-~~~~i~~~~~d~~~~~~--~~fD~Ivs 170 (264)
+.+|.=+ |||.++++ ++ ...+...++++|+++.|...|++=+...| +..|+.|..+|..+... ..||+|.
T Consensus 122 p~~vAFI--GSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~- 198 (277)
T pfam03059 122 PSRIAFI--GSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVF- 198 (277)
T ss_pred CCEEEEE--CCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEE-
T ss_conf 7448996--3788613899998850887314331278899999999998655300472899526444444445476898-
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE--ECCCHH-HHHHHHHHHCCCCEE
Q ss_conf 11333210012211111235754332101123210256899999853788789998--176679-999999997898058
Q gi|254780875|r 171 NPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE--IGYNQK-VDVVRIFESRKLFLV 247 (264)
Q Consensus 171 NPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE--ig~~q~-~~v~~ll~~~gf~~v 247 (264)
+ .||.|+.. +.-.+++++..++++||+.+.+- +|..+. ..+.+.-.-.||...
T Consensus 199 ----l------------------AALVGm~~--e~K~~I~~hL~k~m~~Ga~l~~Rsa~GlR~~LYp~vd~~~~~GFe~l 254 (277)
T pfam03059 199 ----L------------------AALVGMDK--EEKAKVIDHLGKHMAPGALLVLRSAHGARAFLYPVVDPCDLRGFEVL 254 (277)
T ss_pred ----E------------------HHHCCCCH--HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCHHHCCCCEEE
T ss_conf ----7------------------21135433--35999999999745899679996112178762887896673870799
Q ss_pred EEEECCCC-CCEEEEEEC
Q ss_conf 99805689-975999979
Q gi|254780875|r 248 NAFKDYGG-NDRVLLFCR 264 (264)
Q Consensus 248 ~~~kD~~g-~~R~vi~~r 264 (264)
...+=... ++-+|+++|
T Consensus 255 ~~~hP~~~ViNSvI~~rk 272 (277)
T pfam03059 255 SVYHPTDEVINSVIVARK 272 (277)
T ss_pred EEECCCCCCEEEEEEEEC
T ss_conf 998899984113899833
No 164
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=97.76 E-value=8.3e-06 Score=58.65 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=89.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHC
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222221----002333201
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE----GLFDVIVSN 171 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~----~~fD~IvsN 171 (264)
-.+.++|=+| ---..+|++|...+..+|+-+||++.-++.-++.|+.+|+ +++..+.|+-.+++ ++||++++.
T Consensus 43 L~Gk~iL~vG-DDDLtSlA~al~~~p~~I~VvDIDeRll~fI~~~A~~~gl--~i~~~~~DlR~pLP~~l~~~FD~f~TD 119 (243)
T pfam01861 43 LEGKEILVLG-DDDLTSLAAALTGLPKRIAVVDIDERLIKFIERVAKEEGL--KIEAFVHDLRNPLPEDLKHKFDVFITD 119 (243)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCHHHHCCCCEEECC
T ss_conf 5798799972-8618789999648985489996758999999999997499--716887410148999996167989718
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC---EEEEEECCC---HHHHHHHHHHHCCCC
Q ss_conf 13332100122111112357543321011232102568999998537887---899981766---799999999978980
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDG---LCSVEIGYN---QKVDVVRIFESRKLF 245 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G---~l~lEig~~---q~~~v~~ll~~~gf~ 245 (264)
|||-..+- +-++.-+..-|+..| ++-+-|-.. .-.++.+.+.+.||-
T Consensus 120 PPyT~~G~---------------------------~LFlsRgi~~Lk~eg~agYfglt~~esS~~kw~~~Qk~l~~~g~v 172 (243)
T pfam01861 120 PPETVDGL---------------------------KAFLGRGIATLKGEGCAGYFGITHRESSLDKWREIQRMLIEMGVV 172 (243)
T ss_pred CCCCHHHH---------------------------HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCEE
T ss_conf 99877899---------------------------999999999826688522687642601499999999999985920
Q ss_pred EEEEEECCCCC
Q ss_conf 58998056899
Q gi|254780875|r 246 LVNAFKDYGGN 256 (264)
Q Consensus 246 ~v~~~kD~~g~ 256 (264)
...+++|++-.
T Consensus 173 Itdii~~Fn~Y 183 (243)
T pfam01861 173 ITDLIRNFNVY 183 (243)
T ss_pred HHHHHHHHHCC
T ss_conf 99987666305
No 165
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=97.75 E-value=9.3e-06 Score=58.33 Aligned_cols=125 Identities=21% Similarity=0.171 Sum_probs=82.6
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC------------CCCCCCCCCCCCCCCCCCC
Q ss_conf 0124686056642142112331222233321001333222002444201------------1000122222222222222
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNA------------VTNGVSERFDTLQSDWFSS 160 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~------------~~~~~~~~i~~~~~d~~~~ 160 (264)
....++.|||=-|||.|.=...+|.. +..|+|+|+|+.|++.+.+.. ..+. ..+++++++|+|+.
T Consensus 18 l~~~~~~rvlVPlCGks~D~~wLa~~--G~~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~-~~~i~i~~gD~F~l 94 (203)
T pfam05724 18 LNLPPGLRVLVPLCGKALDMVWLAEQ--GHFVVGVEISELAVEKFFAEANLSPPITELSGFKEYR-AGGIELLCGDFFTL 94 (203)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEEC-CCCEEEEECCHHCC
T ss_conf 38999988999689985999999838--9848999567999999999737887510136621320-58648997732137
Q ss_pred C---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE---EEECCC----
Q ss_conf 2---100233320113332100122111112357543321011232102568999998537887899---981766----
Q gi|254780875|r 161 V---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS---VEIGYN---- 230 (264)
Q Consensus 161 ~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~---lEig~~---- 230 (264)
. .++||+|. +..-+..++++.+ .+.++...++|+|+|..+ +|....
T Consensus 95 ~~~~~g~fD~Iy------Draal~ALpp~~R------------------~~Ya~~l~~lL~pgg~~lLitl~y~~~~~~G 150 (203)
T pfam05724 95 PREELGKFDLIY------DRAALCALPPEMR------------------PRYAKQMYELLPPGGEGLLITLDYPQTDHEG 150 (203)
T ss_pred CHHHCCCCCEEE------EECCEEECCHHHH------------------HHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
T ss_conf 843468734899------7032353898999------------------9999999997189966999999738655799
Q ss_pred -----HHHHHHHHHHHCCCC
Q ss_conf -----799999999978980
Q gi|254780875|r 231 -----QKVDVVRIFESRKLF 245 (264)
Q Consensus 231 -----q~~~v~~ll~~~gf~ 245 (264)
-.+++.+++. .+|.
T Consensus 151 PPfsv~~~Ev~~lf~-~~f~ 169 (203)
T pfam05724 151 PPFSVPAAELEALFG-GGWK 169 (203)
T ss_pred CCCCCCHHHHHHHHC-CCCE
T ss_conf 489899999998708-9856
No 166
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=97.75 E-value=0.00017 Score=49.95 Aligned_cols=134 Identities=24% Similarity=0.284 Sum_probs=96.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC-C---CCCCCCCCCCCCCC---C-----CC
Q ss_conf 46860566421421123312222333210013332220024442011000-1---22222222222222---2-----10
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG-V---SERFDTLQSDWFSS---V-----EG 163 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~-~---~~~i~~~~~d~~~~---~-----~~ 163 (264)
..|.+||=+|=|=|...=-++++-.=-+++.|||+..-++++|+=..... - +-|+++.-.|-+++ . .+
T Consensus 74 ~NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~~fl~~~Gasdv~~ 153 (284)
T TIGR00417 74 PNPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGFKFLRDTGASDVEK 153 (284)
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCCC
T ss_conf 98854789963888468788755981679999727478999888261210566588803589825179897615222212
Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECC--CH---HHHHHH
Q ss_conf 023332011333210012211111235754332101123210256899999853788789998-176--67---999999
Q gi|254780875|r 164 LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE-IGY--NQ---KVDVVR 237 (264)
Q Consensus 164 ~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE-ig~--~q---~~~v~~ 237 (264)
+||+|++- .. +|. =|..+|| -+++.+.+.+-|+|+|.+... -+. -| ..++.+
T Consensus 154 ~fDVIIvD-----st-----DPv----GPa~~LF--------~~~Fy~~~~~aL~~~Gv~v~Qss~s~~~~~~~~~d~~r 211 (284)
T TIGR00417 154 KFDVIIVD-----ST-----DPV----GPAETLF--------TKEFYELLKKALNEDGVIVAQSSESPWLQLELIKDLKR 211 (284)
T ss_pred CCCEEEEE-----CC-----CCC----CCCCCHH--------HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 14479972-----77-----895----6554102--------17999999985299988998027884327488887888
Q ss_pred HHHHCCCCEEEEEE
Q ss_conf 99978980589980
Q gi|254780875|r 238 IFESRKLFLVNAFK 251 (264)
Q Consensus 238 ll~~~gf~~v~~~k 251 (264)
.+++.||..++.+.
T Consensus 212 ~~~~~~F~~~~~y~ 225 (284)
T TIGR00417 212 KVKEVPFPITEYYT 225 (284)
T ss_pred HHHHCCCCCCEEEE
T ss_conf 77526897530466
No 167
>KOG1663 consensus
Probab=97.70 E-value=2e-05 Score=56.16 Aligned_cols=101 Identities=25% Similarity=0.335 Sum_probs=76.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--------CHHH
Q ss_conf 4686056642142112331222233-321001333222002444201100012222222222222221--------0023
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--------GLFD 166 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--------~~fD 166 (264)
..+.+++|+|+=+|.=+++.|...| +.+++++|+++.+.+++.+-.+.-|+.++|.+.+|+..+.++ +.||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEE
T ss_conf 58733899812127899999974599965999961868888759999860633034234252566699998557998425
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 33201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
+++- + .+-. -|-...+.+.+++++||.+++
T Consensus 152 faFv-----D--------adK~----------------nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663 152 FAFV-----D--------ADKD----------------NYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EEEE-----C--------CCHH----------------HHHHHHHHHHHHCCCCCEEEE
T ss_conf 9997-----3--------6667----------------789999999856213538999
No 168
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=97.68 E-value=7.4e-05 Score=52.40 Aligned_cols=143 Identities=16% Similarity=0.177 Sum_probs=92.4
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------CCC-
Q ss_conf 24686056642142112331222233-3210013332220024442011000122222222222222---------210-
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------VEG- 163 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~~~- 163 (264)
-+++..||||||--|-.+=..+.... .-.|+|||+.+ .+-+.++ ++.|++||+..+ +++
T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~---------~k~FP~~-nv~fi~GDftdee~l~ki~~~~g~d 99 (192)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP---------MKGFPIE-NVDFIRGDFTDEEVLNKILERVGDD 99 (192)
T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC---------CCCCCCC-CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 10788678657898738778877606853389985455---------7885646-6147544767878999999857898
Q ss_pred --HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf --023332011333210012211111235754332101123210256899999853788789998176679999999997
Q gi|254780875|r 164 --LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFES 241 (264)
Q Consensus 164 --~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~ 241 (264)
++|+|+|- +.|++..+ |.+ .-.-.++..+.-++.|.+.|+++|-+++-. =|++.+-+.+++
T Consensus 100 ekk~DVV~SD-----------aaP~~SG~-~~i---Dh~Rs~dLv~~aL~ia~~vL~~~GnfvvKv--FqGe~~d~y~~e 162 (192)
T TIGR00438 100 EKKVDVVMSD-----------AAPNISGI-WDI---DHLRSIDLVELALDIAKEVLKPKGNFVVKV--FQGEEIDEYLNE 162 (192)
T ss_pred CCEEEEEEEC-----------CCCCCCCC-CCC---CHHHHHHHHHHHHHHHHHHHHCCCCEEEEE--EECCCHHHHHHH
T ss_conf 7437789852-----------68887898-754---344379999999999999861589899998--537428899997
Q ss_pred --CCCCEEEEEECCCCCCE----EEEEEC
Q ss_conf --89805899805689975----999979
Q gi|254780875|r 242 --RKLFLVNAFKDYGGNDR----VLLFCR 264 (264)
Q Consensus 242 --~gf~~v~~~kD~~g~~R----~vi~~r 264 (264)
.-|..+.++|=-+-+.| .+|+++
T Consensus 163 ~r~~F~~~k~~kP~aSRk~SaEvYiva~~ 191 (192)
T TIGR00438 163 LRKLFEKVKVTKPQASRKRSAEVYIVAKR 191 (192)
T ss_pred HHHCCCEEEEECCHHHHHCCCEEEEEEEC
T ss_conf 65205476744783132057468997506
No 169
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=97.68 E-value=9.3e-05 Score=51.74 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=64.3
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC-CC-CCHHHHHHHCCH
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222-22-100233320113
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS-SV-EGLFDVIVSNPP 173 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~-~~-~~~fD~IvsNPP 173 (264)
.....|.|+|||-+-|+-++.. ..+|+.-|.-... .+| ...|+-. ++ ++..|+.|.
T Consensus 66 p~~~vIaD~GCGdA~lA~~~~~---~~kV~SfDLva~n--------------~~V--t~cDi~~~PL~d~svDvaVf--- 123 (214)
T pfam05148 66 PGNGVIADLGCGEARIAFRKRE---FENVHSFDLVAVN--------------KRV--IPCDMARVPLEDESVDVAVF--- 123 (214)
T ss_pred CCCEEEEECCCCHHHHHHHCCC---CCEEEEEECCCCC--------------CCC--CCCCCCCCCCCCCCEEEEEE---
T ss_conf 9971899758865799986467---8738851325689--------------883--51353368788772636877---
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EECC--CHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3321001221111123575433210112321025689999985378878999-8176--679999999997898058998
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIGY--NQKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig~--~q~~~v~~ll~~~gf~~v~~~ 250 (264)
-+||-|- -+..++.+|.+.|+++|.|++ |+-. .-.....+.++..||... .
T Consensus 124 -------------------CLSLMGT-----N~~~fi~EA~RvLk~~G~L~IAEV~SRf~~~~~Fv~~~~~~GF~~~--~ 177 (214)
T pfam05148 124 -------------------CLSLMGT-----NIADFLKEANRILKNGGLLKIAEVRSRFPSVGLFERAFTKLGFEVE--H 177 (214)
T ss_pred -------------------EHHHHCC-----CHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEE--E
T ss_conf -------------------5876288-----7799999987603108789999974016898999999997597677--5
Q ss_pred ECCCCC
Q ss_conf 056899
Q gi|254780875|r 251 KDYGGN 256 (264)
Q Consensus 251 kD~~g~ 256 (264)
+|.++.
T Consensus 178 ~d~~n~ 183 (214)
T pfam05148 178 VDLSNA 183 (214)
T ss_pred EECCCC
T ss_conf 306888
No 170
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=7.3e-06 Score=59.03 Aligned_cols=100 Identities=23% Similarity=0.261 Sum_probs=72.5
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHH
Q ss_conf 24686056642142112331222233321001333222002444201100012222222222222221002333201133
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPY 174 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPY 174 (264)
--...+|||+|+|||..+|+-++. -...|++.|+.+.+..-.+-|++.|++. +.+.+.|..- .+..||+++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g-~~~~~Dl~La---- 148 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG-SPPAFDLLLA---- 148 (218)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHH-HHHHHHHCCCCHHHHHHHHCCHHHCCCE--EEEEECCCCC-CCCCEEEEEE----
T ss_conf 103653244156667088999985-0378876278847888853062215621--6774313368-9864038985----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 321001221111123575433210112321025689999985378878999
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
+| .-|++..| .+++. ....|...|..++
T Consensus 149 ---gD--------lfy~~~~a-----------~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 149 ---GD--------LFYNHTEA-----------DRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred ---EC--------EECCCHHH-----------HHHHH-HHHHHHHCCCEEE
T ss_conf ---03--------00283588-----------98899-9999985797799
No 171
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=3.5e-05 Score=54.58 Aligned_cols=81 Identities=30% Similarity=0.369 Sum_probs=63.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCC--
Q ss_conf 8605664214211233122223332100133322200244420110001222222222222222---10023332011--
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNP-- 172 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNP-- 172 (264)
+.+|+|--+|||.=+|-.|.+.+..++++-|+||+|+++.++|+..|...+ ...++.|....+ ...||+|=-.|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCC-CEEECCHHHHHHHHCCCCCCEEECCCCC
T ss_conf 738864355533667545342576179971589899999999998347666-3255342899987258876378138999
Q ss_pred ---HHHHHHC
Q ss_conf ---3332100
Q gi|254780875|r 173 ---PYIESVI 179 (264)
Q Consensus 173 ---PYI~~~~ 179 (264)
||++..-
T Consensus 132 SPaPFlDaA~ 141 (380)
T COG1867 132 SPAPFLDAAL 141 (380)
T ss_pred CCCHHHHHHH
T ss_conf 9726799999
No 172
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.63 E-value=5.4e-05 Score=53.30 Aligned_cols=152 Identities=23% Similarity=0.296 Sum_probs=98.0
Q ss_pred CCHHHHCCC-EEEEEEEEEEECCCC----CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 837685363-144237677504620----512235655531012332110124686056642142112331222233321
Q gi|254780875|r 49 ESIHRILGW-RDFYNVRLTLSSDTF----EPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFK 123 (264)
Q Consensus 49 ~Pl~YIlg~-~~F~~~~f~v~~~vL----IPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~ 123 (264)
.+.|.|.=. .+=+|.-+..+..++ ...-+-|.++-..+. ....+.+||-+|-|-|..+=.+.+..+-.+
T Consensus 29 s~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~------ah~~pk~VLiiGgGdG~tlRevlkh~~ve~ 102 (282)
T COG0421 29 SEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLL------AHPNPKRVLIIGGGDGGTLREVLKHLPVER 102 (282)
T ss_pred CCCEEEEEEECCCCCEEEEECCHHHHCCCHHHHHHHHHHHCHHH------HCCCCCEEEEECCCCCHHHHHHHHCCCCCE
T ss_conf 78517999964651127884475550210268899998703064------379977699988976699999983688433
Q ss_pred CCCCCCCCCCHHHHHHCCCCCC--C-CCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 0013332220024442011000--1-222222222222222---100233320113332100122111112357543321
Q gi|254780875|r 124 GVGVDISCKALEIAKSNAVTNG--V-SERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLD 197 (264)
Q Consensus 124 v~~~Dis~~al~~A~~N~~~~~--~-~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~ 197 (264)
++.+||++.-+++|++-..... . +.|++++.+|..+.+ +.+||+|+++ . .++ + -|..+||
T Consensus 103 i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D-----~-----tdp-~---gp~~~Lf 168 (282)
T COG0421 103 ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD-----S-----TDP-V---GPAEALF 168 (282)
T ss_pred EEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEC-----C-----CCC-C---CCCCCCC
T ss_conf 799970889999999866675433579736899610799987488767789985-----8-----899-8---8430237
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 0112321025689999985378878999817
Q gi|254780875|r 198 GGIDGLSHYRTIADGVSRHLNKDGLCSVEIG 228 (264)
Q Consensus 198 gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig 228 (264)
. +.+.+.+.+.|+++|++....|
T Consensus 169 t--------~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 169 T--------EEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred C--------HHHHHHHHHHCCCCCEEEEECC
T ss_conf 7--------9999999986288968999447
No 173
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.59 E-value=0.00012 Score=51.03 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=97.4
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---C-CCHHHHH-H
Q ss_conf 246860566421421123312222333210013332220024442011000122222222222222---2-1002333-2
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---V-EGLFDVI-V 169 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---~-~~~fD~I-v 169 (264)
..+.--+|++|-|.|--.+..|+..|+..++|+|.-..-+.-.-..+..+++.+ +.++.+|.... + ++.+|-| +
T Consensus 342 ~~k~kv~LEIGFG~Ge~L~~~A~~nP~~~fIG~Evy~nGva~ll~~i~~~~l~N-iri~~~D~~~ll~~lp~~sld~i~i 420 (503)
T PRK01544 342 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI 420 (503)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCE-EEEEHHHHHHHHHHCCCCCCCEEEE
T ss_conf 556708999536987999999996898888999406566999999999869975-9987335999998566204041678
Q ss_pred HCC-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEE
Q ss_conf 011-333210012211111235754332101123210256899999853788789998176-679999999997898058
Q gi|254780875|r 170 SNP-PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLV 247 (264)
Q Consensus 170 sNP-PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v 247 (264)
-.| |+ +.--+.-+++ +-..++....+.|++||.+.+--+. +..+.+.+++++++-+.+
T Consensus 421 lfPDPW------pKkRH~KRRl--------------i~~efl~~l~~~Lk~~G~l~~aTD~~~Y~~~~le~~~~~~~f~~ 480 (503)
T PRK01544 421 LFPDPW------IKNKQKKKRI--------------FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 480 (503)
T ss_pred ECCCCC------CCCCHHHHCC--------------CCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEE
T ss_conf 789999------7553220017--------------79999999999714698899976788999999999986799656
Q ss_pred EEEECCC
Q ss_conf 9980568
Q gi|254780875|r 248 NAFKDYG 254 (264)
Q Consensus 248 ~~~kD~~ 254 (264)
....|+.
T Consensus 481 ~~~~d~~ 487 (503)
T PRK01544 481 INKDDYL 487 (503)
T ss_pred ECCCCCC
T ss_conf 6255556
No 174
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.54 E-value=1.4e-05 Score=57.12 Aligned_cols=104 Identities=25% Similarity=0.383 Sum_probs=67.9
Q ss_pred EEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 144237677504620512235655531012332110-1246860566421421123312222333210013332220024
Q gi|254780875|r 58 RDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRI-EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEI 136 (264)
Q Consensus 58 ~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~-~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~ 136 (264)
-.||.-+|--+ -|-|-.++.++..-+.+..... ...+..+++++||..|.=..+|-+..|.....|+||++.|++.
T Consensus 6 E~FWageFG~~---Yi~RN~~~~~~~sn~~~f~~~l~~~~~ikSilE~GcNIGlNL~ALk~L~P~~~l~gIEIN~~A~~~ 82 (204)
T TIGR03587 6 EQFWAGEFGKE---YIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK 82 (204)
T ss_pred HHHHHHHHCHH---HHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf 77750333668---777277347788899999999835788882689668847769999874874404999539999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHH
Q ss_conf 44201100012222222222222221-00233320
Q gi|254780875|r 137 AKSNAVTNGVSERFDTLQSDWFSSVE-GLFDVIVS 170 (264)
Q Consensus 137 A~~N~~~~~~~~~i~~~~~d~~~~~~-~~fD~Ivs 170 (264)
++++... ..+.+++++++.+ .+||++++
T Consensus 83 lk~~~~~------~~i~n~SIld~~~~~~~DLv~t 111 (204)
T TIGR03587 83 AKAYLPN------INIIQGSLFDPFKDNFFDLVLT 111 (204)
T ss_pred HHHHCCC------CEEEECCCCCCCCCCCEEEEEE
T ss_conf 9865897------2699653346677874238998
No 175
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=97.47 E-value=0.00019 Score=49.70 Aligned_cols=140 Identities=18% Similarity=0.122 Sum_probs=81.0
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5310123321101246860566421421123312222333-210013332220024442011000122222222222222
Q gi|254780875|r 82 VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPF-FKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS 160 (264)
Q Consensus 82 v~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~-~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~ 160 (264)
+-.++..+.++...-.+.++||+|+|.|.-..+....++. -+++++|-|+.+.++++.=+.......... ...+....
T Consensus 19 ~~~vl~Ei~~r~p~f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~-~~~~~~~~ 97 (275)
T pfam09243 19 VRASLDELAERVPQFAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAW-RARDVIGA 97 (275)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCE-ECCCCCCC
T ss_conf 99999999986799998757772775799999999884247689997489999999999985184345431-11431011
Q ss_pred C--CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE-EEEECCCHH----H
Q ss_conf 2--10023332011333210012211111235754332101123210256899999853788789-998176679----9
Q gi|254780875|r 161 V--EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLC-SVEIGYNQK----V 233 (264)
Q Consensus 161 ~--~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l-~lEig~~q~----~ 233 (264)
. ..++|+|++ +|. +.++..+ .-..+++..-+.++ |.| ++|-|..++ .
T Consensus 98 ~~~~~~~DLVi~--sy~----L~El~~~------------------~R~~~v~~LW~~~~--g~LVlVEpGtp~Gf~~I~ 151 (275)
T pfam09243 98 ALDFEPADLVTI--SYV----LDELTPA------------------SREKVIDNLWAKAA--QALVIVEPGTPAGWRRVL 151 (275)
T ss_pred CCCCCCCCEEEE--ECH----HCCCCHH------------------HHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHH
T ss_conf 245898788996--142----2079978------------------99999999999539--979999189817999999
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 999999978980589
Q gi|254780875|r 234 DVVRIFESRKLFLVN 248 (264)
Q Consensus 234 ~v~~ll~~~gf~~v~ 248 (264)
+.++++.+.|+..+-
T Consensus 152 ~aR~~ll~~g~hivA 166 (275)
T pfam09243 152 EARERLIAAGFHIAA 166 (275)
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999868998997
No 176
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=97.46 E-value=0.00016 Score=50.17 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC---CCCCCC-CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1001333222002444201100012222222222---222221-002333201133321001221111123575433210
Q gi|254780875|r 123 KGVGVDISCKALEIAKSNAVTNGVSERFDTLQSD---WFSSVE-GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDG 198 (264)
Q Consensus 123 ~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d---~~~~~~-~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~g 198 (264)
+|+|.||.++|++-+++..+.+++.+|+++++.+ +.+.++ +++|.++.|-=|.|.+|..- .- .|...
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLGYLPggDk~i-----~T-~~~tT--- 71 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLGYLPGGDKSI-----TT-KPDTT--- 71 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-----EE-CCHHH---
T ss_conf 9579960999999999999965987568999779888986376467668999667688999875-----87-77209---
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEE------CCCHHHHHHHHHHHCC
Q ss_conf 11232102568999998537887899981------7667999999999789
Q gi|254780875|r 199 GIDGLSHYRTIADGVSRHLNKDGLCSVEI------GYNQKVDVVRIFESRK 243 (264)
Q Consensus 199 g~dGl~~~~~ii~~~~~~L~~~G~l~lEi------g~~q~~~v~~ll~~~g 243 (264)
-.-++.+..+|+|||.+.+-+ |....+.|.+++++..
T Consensus 72 --------i~Al~~al~lL~~gG~i~i~~Y~GH~gG~eE~~aV~~~~~~L~ 114 (140)
T pfam06962 72 --------LEAIKKLLELLKPGGLIILVIYHGHEEGKKEKDAVLDFVSNLD 114 (140)
T ss_pred --------HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf --------9999999996366989999997999987999999999998489
No 177
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.34 E-value=0.00019 Score=49.79 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCC----CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC-C
Q ss_conf 122356555310123321101246860566421421123312----22233321001333222002444201100012-2
Q gi|254780875|r 74 PRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLAL----LKESPFFKGVGVDISCKALEIAKSNAVTNGVS-E 148 (264)
Q Consensus 74 PRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~l----a~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~-~ 148 (264)
-|-|.++|-+.+-+.... -.....++|+|||++-=.-.| .+.......+++|||.++++.+-.+....... -
T Consensus 56 tR~E~~IL~~~~~eIa~~---i~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~~~~~~~l 132 (319)
T TIGR03439 56 TNDEIEILKKHSSDIAAS---IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHV 132 (319)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCC
T ss_conf 378999999989999985---58997699746887245899999998549974288651769999999987424048975
Q ss_pred CCCCCCCCCCC
Q ss_conf 22222222222
Q gi|254780875|r 149 RFDTLQSDWFS 159 (264)
Q Consensus 149 ~i~~~~~d~~~ 159 (264)
.+.-+++|+.+
T Consensus 133 ~v~~i~gdy~~ 143 (319)
T TIGR03439 133 RCAGLLGTYDD 143 (319)
T ss_pred EEEEEEECHHH
T ss_conf 58888753787
No 178
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.33 E-value=0.00016 Score=50.25 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 51223565553101233211012468605664214211233122223-33210013332220024442011000122222
Q gi|254780875|r 73 EPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFD 151 (264)
Q Consensus 73 IPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~ 151 (264)
--|-|.|+|-..+-+.... -.+...++|+|||++-=.-.|...+ .....+++|||.++++.+.++....--.-.+.
T Consensus 42 ~tr~E~~IL~~~~~~Ia~~---~~~~~~lIElGsG~~~Kt~~LL~al~~~~~Y~plDIS~~~L~~s~~~l~~~~p~l~v~ 118 (301)
T TIGR03438 42 PTRTEAAILERHADEIAAA---TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVH 118 (301)
T ss_pred CCHHHHHHHHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 7168999999889999986---2767647731788623789999986215638877568999999999999778997689
Q ss_pred CCCCCCCCCCCCHHHHHH--HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 222222222210023332--0113332100122111112357543321011232102568999998537887899981
Q gi|254780875|r 152 TLQSDWFSSVEGLFDVIV--SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI 227 (264)
Q Consensus 152 ~~~~d~~~~~~~~fD~Iv--sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi 227 (264)
-+.+|+.+.+. +.- .++| ...--+--++-+++|..| ..+++...+.|.|++.+++-+
T Consensus 119 ~v~~dy~~~l~----~~~~~~~~~----rl~~flGSsIGNf~~~ea-----------~~fL~~~~~~l~~~d~lLiG~ 177 (301)
T TIGR03438 119 GICADFTQPLA----LPPEPAAGR----RLGFFPGSTIGNFTPEEA-----------VAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEECHHCHHH----CCCCCCCCC----CEEEECCCCCCCCCHHHH-----------HHHHHHHHHHHCCCCEEEEEE
T ss_conf 99633315744----566557887----589970754478998999-----------999999999719998489940
No 179
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.31 E-value=0.00017 Score=49.99 Aligned_cols=138 Identities=18% Similarity=0.169 Sum_probs=83.7
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHCCC-----------CCCCCCCCCCCCCCCCCCC
Q ss_conf 1246860566421421123312222333210013332220024-442011-----------0001222222222222222
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEI-AKSNAV-----------TNGVSERFDTLQSDWFSSV 161 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~-A~~N~~-----------~~~~~~~i~~~~~d~~~~~ 161 (264)
...++.+|+=-+||.+.=..-||. .+.+|+|+|+|+.|++- -++|.. .+. ..++.++++|+|+..
T Consensus 34 ~~~~~~rVlVPlCGKs~Dm~wLa~--~G~~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~-~~~i~i~~gDfF~L~ 110 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQ-AGEISLYCGDFFALT 110 (218)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHH--CCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEE-CCCEEEEECCCCCCC
T ss_conf 878898699948986776999984--89726998352999999999738986301367603775-388279966420278
Q ss_pred C---CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE-EEEECCCH------
Q ss_conf 1---0023332011333210012211111235754332101123210256899999853788789-99817667------
Q gi|254780875|r 162 E---GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLC-SVEIGYNQ------ 231 (264)
Q Consensus 162 ~---~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l-~lEig~~q------ 231 (264)
. +.||.|. +..-+-.++++.+ .+.++....+|+|+|.. ++-+.++|
T Consensus 111 ~~~~g~~DaIy------DRaal~ALpp~~R------------------~~Y~~~l~~ll~~g~~~LLitl~Y~q~~~~GP 166 (218)
T PRK13255 111 AADLADVDAVY------DRAALIALPEEMR------------------ERYVQQLAALLPAGCRGLLVTLDYPQEELAGP 166 (218)
T ss_pred HHHCCCCCEEE------ECCCEECCCHHHH------------------HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
T ss_conf 63547748899------7538012898999------------------99999999864998748999986276556896
Q ss_pred -----HHHHHHHHHHC-CCCEEEEEECCCCCCE
Q ss_conf -----99999999978-9805899805689975
Q gi|254780875|r 232 -----KVDVVRIFESR-KLFLVNAFKDYGGNDR 258 (264)
Q Consensus 232 -----~~~v~~ll~~~-gf~~v~~~kD~~g~~R 258 (264)
.++|..++... .....+....+.+.+|
T Consensus 167 PFsv~~~Ev~~ly~~~~~i~~L~~~~~~~~~p~ 199 (218)
T PRK13255 167 PFSVSDEEVEALFAGDFEIELLERQDVLEDNPK 199 (218)
T ss_pred CCCCCHHHHHHHHCCCCEEEEEEEECCCCCCHH
T ss_conf 998999999998437867999763134465877
No 180
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=97.22 E-value=0.00098 Score=45.02 Aligned_cols=136 Identities=21% Similarity=0.142 Sum_probs=86.3
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHCCH
Q ss_conf 46860566421421123312222333210013332220024442011000122222222222222--2100233320113
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIVSNPP 173 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~IvsNPP 173 (264)
....+.||.|+|-|=++=.+.... --+|..+|-.++.++.|+++....+- ...++++..+-++ -+++||+|.+-
T Consensus 54 ~~~~~alDcGAGIGRVTk~lL~~~-f~~VDlVEpv~~Fl~~ak~~l~~~~~-~~~~~~~~gLQdf~P~~~~YD~IW~Q-- 129 (217)
T pfam05891 54 RRHLVALDCGAGIGRVTKNLLLPL-FSKVDLVEPVEDFLAKAKEYLAEEKK-KVGNFFCVGLQDFTPEEGRYDLIWIQ-- 129 (217)
T ss_pred CCCCEEEECCCCCCEECHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCCCCEEEEEEEH--
T ss_conf 763266542676361126678875-48135754449999999998740379-76538973610168999817699805--
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-E--------ECC------CHHHHHHHH
Q ss_conf 3321001221111123575433210112321025689999985378878999-8--------176------679999999
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-E--------IGY------NQKVDVVRI 238 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-E--------ig~------~q~~~v~~l 238 (264)
.+..|=+. +..-.++.-+...|+|+|.+++ | .+. ...+...++
T Consensus 130 ------------W~~ghLtD----------~dlv~Fl~RCk~~L~~~G~IvvKEN~~~~~~~~D~~DsSvTRs~~~~~~l 187 (217)
T pfam05891 130 ------------WCIGHLTD----------EDLVAFLKRCKSGLKPNGIIVIKENVTQEGVIFDDVDSSVTRGEASFRKI 187 (217)
T ss_pred ------------HHHCCCCH----------HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEECCCCCCCCCCHHHHHHH
T ss_conf ------------84521888----------99999999999847898649984223677774156545431779999999
Q ss_pred HHHCCCCEEEEEECCCCCCE
Q ss_conf 99789805899805689975
Q gi|254780875|r 239 FESRKLFLVNAFKDYGGNDR 258 (264)
Q Consensus 239 l~~~gf~~v~~~kD~~g~~R 258 (264)
+++.|+..+... ...|.|+
T Consensus 188 F~~AGl~~v~~~-~Q~gfP~ 206 (217)
T pfam05891 188 FKKAGLKLVAEE-RQKGLPQ 206 (217)
T ss_pred HHHCCCEEEEHH-HHCCCCC
T ss_conf 998598566043-3068995
No 181
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=97.20 E-value=0.001 Score=44.87 Aligned_cols=140 Identities=18% Similarity=0.116 Sum_probs=80.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHH
Q ss_conf 6056642142112331222233321-00133322200244420110001222222222222222---1002333201133
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKESPFFK-GVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNPPY 174 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~~~~~-v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNPPY 174 (264)
.+++|+.||.|..++.+.+. +.+ +.++|+++.|++.-+.|..... .+|+.+.. -..+|+++.-||-
T Consensus 1 ~~vidlF~G~GG~s~G~~~a--G~~~~~a~e~d~~a~~ty~~N~~~~~--------~~Di~~~~~~~~~~~Dvl~ggpPC 70 (319)
T pfam00145 1 FKFIDLFAGIGGFRLGLEQA--GFECVAANEIDKSAAKTYEANFPKVP--------IGDITLIDIKDIPDIDILTGGFPC 70 (319)
T ss_pred CCEEEECCCCCHHHHHHHHC--CCEEEEEEECCHHHHHHHHHHCCCCC--------CCCCCCCCHHHCCCCCEEEECCCC
T ss_conf 95899780707899999987--99299998389999999998779996--------177540887478886889868999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC--------CCHHHHHHHHHHHCCCCE
Q ss_conf 321001221111123575433210112321025689999985378878999817--------667999999999789805
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG--------YNQKVDVVRIFESRKLFL 246 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig--------~~q~~~v~~ll~~~gf~~ 246 (264)
=+.+-... ... .-+|+..| +..+++.+ +.++|. ++++|-= ....+.+.+.|++.||..
T Consensus 71 Q~fS~ag~-~~~--~~d~r~~L---------~~~~~~~v-~~~~Pk-~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v 136 (319)
T pfam00145 71 QDFSIAGK-QKG--FEDTRGTL---------FFEIIRII-KEKKPK-AFLLENVKGLLSHDNGNTLNVILETLEELGYSV 136 (319)
T ss_pred CCCCCCCC-CCC--CCCCCCHH---------HHHHHHHH-HHHCCC-EEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 87240155-688--53433138---------99999987-751986-887304087864453058999999998679855
Q ss_pred EEEE---ECC---CCCCEEEEE
Q ss_conf 8998---056---899759999
Q gi|254780875|r 247 VNAF---KDY---GGNDRVLLF 262 (264)
Q Consensus 247 v~~~---kD~---~g~~R~vi~ 262 (264)
.... .|| +.+.|+++.
T Consensus 137 ~~~vlna~dyGvPQ~R~R~fii 158 (319)
T pfam00145 137 SWKVLNASDYGVPQNRERVFIV 158 (319)
T ss_pred CEEECCHHHCCCCCCCCEEEEE
T ss_conf 3210778880898764189999
No 182
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.19 E-value=0.0011 Score=44.59 Aligned_cols=141 Identities=21% Similarity=0.186 Sum_probs=81.9
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHCCH
Q ss_conf 605664214211233122223332-10013332220024442011000122222222222222----2100233320113
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKESPFF-KGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEGLFDVIVSNPP 173 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~~~~-~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~~fD~IvsNPP 173 (264)
++++||.||.|.+++.+.+. +. .+.++|+++.|+++-+.|.... ...+|+.+. +.+.+|+|+.-||
T Consensus 1 l~v~dLFsG~GG~s~Gl~~a--G~~~~~a~e~d~~a~~t~~~N~~~~-------~~~~Di~~~~~~~~~~~vDll~ggpP 71 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred CCEEEECCCCCHHHHHHHHC--CCEEEEEEECCHHHHHHHHHHCCCC-------CCCCCHHHCCCCCCCCCCCEEEECCC
T ss_conf 95999767807899999986--9989999968999999999887999-------52588644653213788788986899
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--C------CCHHHHHHHHHHHCCCC
Q ss_conf 332100122111112357543321011232102568999998537887899981--7------66799999999978980
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--G------YNQKVDVVRIFESRKLF 245 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g------~~q~~~v~~ll~~~gf~ 245 (264)
-=+.+.... ... ..+|+..| +..++..+ +.++|. ++++|- | ......+.+.|++.||.
T Consensus 72 CQ~fS~ag~-~~~--~~d~r~~L---------~~~~~~~i-~~~~P~-~~~~ENV~~~~~~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 72 CQPFSIAGK-RKG--FEDTRGTL---------FFEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred CCCCCCCCC-CCC--CCCCCCHH---------HHHHHHHH-HHHCCC-EEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCE
T ss_conf 987354786-388--65640168---------99999999-876885-88276376687523560789999999867982
Q ss_pred EEEEE---ECC---CCCCEEEEE
Q ss_conf 58998---056---899759999
Q gi|254780875|r 246 LVNAF---KDY---GGNDRVLLF 262 (264)
Q Consensus 246 ~v~~~---kD~---~g~~R~vi~ 262 (264)
..... .|+ +.+.|+++.
T Consensus 138 ~~~~vl~a~~~GvPQ~R~R~fiv 160 (275)
T cd00315 138 VYWKLLNASDYGVPQNRERVFII 160 (275)
T ss_pred EEEEEECHHHCCCCCCCCEEEEE
T ss_conf 02778679997999776189999
No 183
>KOG2940 consensus
Probab=97.09 E-value=0.00036 Score=47.89 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=79.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHCCH
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222--22222100233320113
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSD--WFSSVEGLFDVIVSNPP 173 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d--~~~~~~~~fD~IvsNPP 173 (264)
+....++|+|||-|.+.--+..+. --+++.+|.|..+++.++. ++..++.. ..+.+| .+++-++.||+|+|.--
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~-~qdp~i~~--~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRD-AQDPSIET--SYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred HHCCCEEECCCCHHHHHHHHHHCC-HHHEEEEECCHHHHHHHHC-CCCCCEEE--EEEECCHHCCCCCCCCHHHHHHHHH
T ss_conf 607520440655446568877525-1340664041679997532-68985379--9972551015655350111265433
Q ss_pred HHHHHCCCCCCCCCCC-------CCCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf 3321001221111123-------57543-321011232102568999998537887899981766799999999978980
Q gi|254780875|r 174 YIESVIVDCLGLEVRD-------FDPRI-SLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLF 245 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~-------~EP~~-AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~ 245 (264)
-+=.+.++...++ --|-+ +.+||+ -|.-+|- --+....-..||.-----.+.|..++-.+|...||.
T Consensus 147 ---lHW~NdLPg~m~~ck~~lKPDg~Fiasmlggd-TLyELR~-slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940 147 ---LHWTNDLPGSMIQCKLALKPDGLFIASMLGGD-TLYELRC-SLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred ---HHHHCCCCHHHHHHHHHCCCCCCCHHHHHCCC-CHHHHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf ---45640483689998874289751216775644-0999998-763898875169887767046655666577644766
Q ss_pred EEEEEEC
Q ss_conf 5899805
Q gi|254780875|r 246 LVNAFKD 252 (264)
Q Consensus 246 ~v~~~kD 252 (264)
...+-.|
T Consensus 222 m~tvDtD 228 (325)
T KOG2940 222 MLTVDTD 228 (325)
T ss_pred CCEECCC
T ss_conf 4000320
No 184
>KOG1661 consensus
Probab=97.06 E-value=0.00048 Score=47.04 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=63.6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCC---------CCCCCCCCCCCCCC--
Q ss_conf 2468605664214211233122223--3321001333222002444201100012---------22222222222222--
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVS---------ERFDTLQSDWFSSV-- 161 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~---------~~i~~~~~d~~~~~-- 161 (264)
-.+..++||+|+|||-++...+... ++...+|+|.-++-++.+++|....--. .++.+..+|.....
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred HCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 23473101337874089999999945777665144415999999998777650473045564148647996776234775
Q ss_pred CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 100233320113332100122111112357543321011232102568999998537887899981766
Q gi|254780875|r 162 EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN 230 (264)
Q Consensus 162 ~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~ 230 (264)
..+||.| +-|.+--+ +-+...+-|+++|.+++-.+..
T Consensus 160 ~a~YDaI----------------------------hvGAaa~~----~pq~l~dqL~~gGrllip~~~~ 196 (237)
T KOG1661 160 QAPYDAI----------------------------HVGAAASE----LPQELLDQLKPGGRLLIPVGQD 196 (237)
T ss_pred CCCCCEE----------------------------EECCCCCC----CHHHHHHHHCCCCEEEEEECCC
T ss_conf 6876657----------------------------87667622----4799998634387289861146
No 185
>PRK01581 speE spermidine synthase; Validated
Probab=97.05 E-value=0.00037 Score=47.78 Aligned_cols=177 Identities=18% Similarity=0.151 Sum_probs=106.6
Q ss_pred HHHCCCCHHHHCCCEE--------EEEEEEEEECCCC----CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 8974983768536314--------4237677504620----512235655531012332110124686056642142112
Q gi|254780875|r 44 RSLKHESIHRILGWRD--------FYNVRLTLSSDTF----EPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAV 111 (264)
Q Consensus 44 rr~~g~Pl~YIlg~~~--------F~~~~f~v~~~vL----IPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i 111 (264)
...+||-..-.-.+.. .-+.+++.|-+.- .----.|.||--++... ..+.+||=+|-|-|.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~nDlRLYLNG~LQFSS~DEyRYHEaLVHPaMa~~------~~~~rVLILGGGDGLA 153 (363)
T PRK01581 80 EIQAGEHTNLFAEQSNYQNINLLQVSDIRLYLDKQLQFSSVDEQIYHEALVHPIMSKV------IDPKRVLILGGGDGLA 153 (363)
T ss_pred HHHCCCCHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC------CCCCEEEEEECCCHHH
T ss_conf 7524542125555414553011665205899748653040067677776532665317------8877389980764399
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCC---CC--C-CCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCC
Q ss_conf 33122223332-100133322200244420110---00--1-222222222222222---10023332011333210012
Q gi|254780875|r 112 CLALLKESPFF-KGVGVDISCKALEIAKSNAVT---NG--V-SERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVD 181 (264)
Q Consensus 112 ~i~la~~~~~~-~v~~~Dis~~al~~A~~N~~~---~~--~-~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~ 181 (264)
.=-+ .++|.. +|+.+|+++..+++|+.+-.. |+ + +.|++++..|.+..+ .+.||+||-.-| |..
T Consensus 154 lREV-LKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~~FDvIIVDlP-----DP~ 227 (363)
T PRK01581 154 LREV-LKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSSLYDVIIIDFP-----DPA 227 (363)
T ss_pred HHHH-HCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEEEEECC-----CCC
T ss_conf 9998-7179856278995699999987519799875120014980499921089998616754428999589-----998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCH-----HHHHHHHHHHCCCCEEE
Q ss_conf 21111123575433210112321025689999985378878999817667-----99999999978980589
Q gi|254780875|r 182 CLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQ-----KVDVVRIFESRKLFLVN 248 (264)
Q Consensus 182 ~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q-----~~~v~~ll~~~gf~~v~ 248 (264)
+. .+ | --+-..+.....++|+++|.+.+.-+... .=.+.+-++..||....
T Consensus 228 n~---------~L---~----KLYS~eFY~Ll~~~La~dG~~vVQSTSPyfApkaFWsI~~Tl~aAGl~t~p 283 (363)
T PRK01581 228 TE---------LL---S----TLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKS 283 (363)
T ss_pred CH---------HH---H----HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHHHHCCCCCCC
T ss_conf 62---------46---6----673599999999861988539996079765762336777779873675413
No 186
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=96.94 E-value=0.0023 Score=42.62 Aligned_cols=184 Identities=18% Similarity=0.165 Sum_probs=106.6
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf 50448858989999999999989749837685363144237677504620512235655531012332110124686056
Q gi|254780875|r 23 IVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRIL 102 (264)
Q Consensus 23 ~~~~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vL 102 (264)
-.+...++|..+..++.+.++.+ .+++.-.|.+-.=-..--.++.+==|.++. +...-+...|+
T Consensus 63 ~~d~~~P~s~G~~~~~~~~~~~L------------~PWRKGPf~l~~i~iD~EW~S~~KWDR~l~----~~~pL~~~~i~ 126 (316)
T TIGR00452 63 KADKSEPLSEGEKKRILEELKAL------------MPWRKGPFELYGIKIDSEWRSDIKWDRVLP----HLSPLKGRTIL 126 (316)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHH------------CCCCCCCCEEEEEEECCCCCCCCCHHHHCC----CCCCCCCCEEE
T ss_conf 51134740101389999999862------------887688815764555043066653554312----46654577789
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CCCCCCCCCCCC---CCCCCCCCHHHHHHHCCHHHHH
Q ss_conf 64214211233122223332100133322200244420110--001222222222---2222221002333201133321
Q gi|254780875|r 103 DLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVT--NGVSERFDTLQS---DWFSSVEGLFDVIVSNPPYIES 177 (264)
Q Consensus 103 DlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~--~~~~~~i~~~~~---d~~~~~~~~fD~IvsNPPYI~~ 177 (264)
|+|||||--.--+.-+-+. .++|+| |..+-.++--+-+ .+-+.|+.+..- ++-+..++-||+|+|
T Consensus 127 DVGC~~GY~~~~M~~~Gak-~~VG~D--P~~L~~~QFE~~~~ll~~~~~~~l~~LGiE~l~~~~pnAFD~vFs------- 196 (316)
T TIGR00452 127 DVGCGSGYHLWRMLGEGAK-LLVGID--PTELFLCQFEAVRKLLDNDKRAILLPLGIEQLQELKPNAFDTVFS------- 196 (316)
T ss_pred EECCCCHHHHHHHHHCCCC-EEEECC--HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEEE-------
T ss_conf 8336870688977620782-787436--578999999999987242355754036702223207641203122-------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE---C------------C---------CHHH
Q ss_conf 00122111112357543321011232102568999998537887899981---7------------6---------6799
Q gi|254780875|r 178 VIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI---G------------Y---------NQKV 233 (264)
Q Consensus 178 ~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi---g------------~---------~q~~ 233 (264)
..|+-|- + ..|+ -+.+..+-|+.+|-|++|. + | .-..
T Consensus 197 -------~GVLYHR-k-------SPLe----~L~~L~~~L~~~GELVL~TLviD~d~~~~LvP~~~YAkMkNVYFIPSv~ 257 (316)
T TIGR00452 197 -------LGVLYHR-K-------SPLE----HLKQLKDQLVKKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVS 257 (316)
T ss_pred -------CCHHHCC-C-------CCHH----HHHHHHHHHHHCCCEEEEEEEECCCCCEEECCCCCCCCEEEEEEHHHHH
T ss_conf -------0202115-5-------7089----9999999987579358653466077675864754442200014202389
Q ss_pred HHHHHHHHCCCCEEEEEE
Q ss_conf 999999978980589980
Q gi|254780875|r 234 DVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 234 ~v~~ll~~~gf~~v~~~k 251 (264)
.+...+++.||.++++..
T Consensus 258 aL~~Wl~kvGF~~~~i~~ 275 (316)
T TIGR00452 258 ALKNWLEKVGFENVRILD 275 (316)
T ss_pred HHHHHHHHCCCCEEEEEE
T ss_conf 998888744953147875
No 187
>KOG1975 consensus
Probab=96.93 E-value=0.0012 Score=44.49 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=70.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC-----CCCCCCCCCCCC-----C---C
Q ss_conf 46860566421421123312222333210013332220024442011000122-----222222222222-----2---1
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSE-----RFDTLQSDWFSS-----V---E 162 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~-----~i~~~~~d~~~~-----~---~ 162 (264)
++.-.++|||||-|-=.+---+. .-...+|+||...+++.|++-.....-.. .+.|+.+|.+.. + +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred CCCCCCCEECCCCCCCHHHHHHH-CCCCEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCC
T ss_conf 12230000056776207676551-45635765343400999999999998666413651699971441668987425789
Q ss_pred CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHC
Q ss_conf 00233320113332100122111112357543321011232102568999998537887899981766799999999978
Q gi|254780875|r 163 GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESR 242 (264)
Q Consensus 163 ~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~ 242 (264)
.+||+|-|- -.+|. .||.. .-.+..+.++...|+|||+++--+.. +..+..-++..
T Consensus 195 p~fDivScQ------F~~HY------aFete----------e~ar~~l~Nva~~LkpGG~FIgTiPd--sd~Ii~rlr~~ 250 (389)
T KOG1975 195 PRFDIVSCQ------FAFHY------AFETE----------ESARIALRNVAKCLKPGGVFIGTIPD--SDVIIKRLRAG 250 (389)
T ss_pred CCCCEEEEE------EEEEE------EECCH----------HHHHHHHHHHHHHCCCCCEEEEECCC--HHHHHHHHHHC
T ss_conf 885556554------56754------31338----------88999999899635888579984696--89999999851
No 188
>PRK04266 fibrillarin; Provisional
Probab=96.87 E-value=0.0077 Score=39.12 Aligned_cols=137 Identities=14% Similarity=0.182 Sum_probs=80.1
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHCCCCCCCCCCCCCCCCCCCCC-----CC
Q ss_conf 10124686056642142112331222233321001333222002----4442011000122222222222222-----21
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALE----IAKSNAVTNGVSERFDTLQSDWFSS-----VE 162 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~----~A~~N~~~~~~~~~i~~~~~d~~~~-----~~ 162 (264)
.....++.+||=||++||.-.--++.-..+-.|+|+|.|+.+.. +|++- .|+--+.+|.-.+ +-
T Consensus 67 ~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R-------~NivPIl~DAr~P~~Y~~~v 139 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEER-------KNIIPILGDARKPEEYAHLV 139 (226)
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC-------CCCEEEECCCCCHHHHHHHC
T ss_conf 56758998799954777984888987517964999982707789999998508-------99625754678845644205
Q ss_pred CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-----CC-----HH
Q ss_conf 002333201133321001221111123575433210112321025689999985378878999817-----66-----79
Q gi|254780875|r 163 GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG-----YN-----QK 232 (264)
Q Consensus 163 ~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig-----~~-----q~ 232 (264)
++.|+|.+. |.. |..| +-++.++..+|+++|.+++-+- .. -.
T Consensus 140 ~~VD~i~qD---------------vAQ--~dQa-----------~I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf 191 (226)
T PRK04266 140 EKVDVIYQD---------------VAQ--PNQA-----------EIAADNADIFLKPGGYLMLAIKARSIDVTKDPKEIF 191 (226)
T ss_pred CCCCEEEEE---------------CCC--HHHH-----------HHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHH
T ss_conf 656589960---------------677--4289-----------999999998601598899999742356468989999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCE---EEEEEC
Q ss_conf 99999999789805899805689975---999979
Q gi|254780875|r 233 VDVVRIFESRKLFLVNAFKDYGGNDR---VLLFCR 264 (264)
Q Consensus 233 ~~v~~ll~~~gf~~v~~~kD~~g~~R---~vi~~r 264 (264)
.+..+.|++.+|..++.. |+.+.+| +++++|
T Consensus 192 ~~~~~~L~~~~~~~~e~i-~L~py~~dH~~vv~r~ 225 (226)
T PRK04266 192 KEEIKKLEEGGFEILEVV-DLEPYHKDHAAVVARK 225 (226)
T ss_pred HHHHHHHHHCCCCEEEEE-ECCCCCCCCEEEEEEC
T ss_conf 999999987699668998-1577678828999966
No 189
>PRK13699 putative methylase; Provisional
Probab=96.86 E-value=0.0014 Score=43.98 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=18.4
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 86056642142112331222233321001333222002444201
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~ 141 (264)
+-.|||-.+|||.-+++ ...-+-+.+|+|++++.+++|++-.
T Consensus 164 gdlVLDPF~GSGTT~vA--A~~lgR~fIGiEi~~~Y~~ia~~Rl 205 (227)
T PRK13699 164 NAIVLDPFAGSGSTCVA--ALQSGRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCEEEECCCCCCHHHHH--HHHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99999779987589999--9981994899968999999999999
No 190
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=96.85 E-value=0.0028 Score=42.06 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=35.4
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 1246860566421421123312222333210013332220024442
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
....+.+||=-|||-|=++.-+|.. +..+.|.|.|--++-..+-
T Consensus 54 ~~~~~~~VLVPGaGLGRLa~Eia~~--G~~~~gNE~S~~Mllas~f 97 (268)
T pfam07942 54 HDRSKIRILVPGAGLGRLAYELATL--GYQVQGNEFSYFMLLCSNF 97 (268)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHC--CCEEEEECCCHHHHHHHHH
T ss_conf 6777828997698803789998725--6468872121999999999
No 191
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=96.79 E-value=0.003 Score=41.84 Aligned_cols=142 Identities=18% Similarity=0.252 Sum_probs=92.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 4620512235655531012332110124686056642142112331222233-321001333222002444201100012
Q gi|254780875|r 69 SDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVS 147 (264)
Q Consensus 69 ~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~ 147 (264)
.|-.---=+|..||-.+| +.++.-.|||+|.-=|-=+.=++-.-| .++|+|+|+...-++--++|++++|++
T Consensus 250 eGwvTvQD~Saq~va~~L-------~P~~~E~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~~RLGl~ 322 (487)
T TIGR00563 250 EGWVTVQDASAQWVATLL-------DPKNEETILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENLDRLGLT 322 (487)
T ss_pred CCCEEHHHHHHHHHHHHH-------CCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCE
T ss_conf 853213216899999973-------8898874773114845704767742479720898862125788999999861883
Q ss_pred -CCCCCCCCC------CCCCCC---CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHH
Q ss_conf -222222222------222221---0023332011333210012211111235754332101123----21025689999
Q gi|254780875|r 148 -ERFDTLQSD------WFSSVE---GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDG----LSHYRTIADGV 213 (264)
Q Consensus 148 -~~i~~~~~d------~~~~~~---~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dG----l~~~~~ii~~~ 213 (264)
..|.-.+++ |...++ .+||-|+--=|=-..+.+ +-.|.+=+.=.++- ++.=..|++..
T Consensus 323 ~i~~~~~~~~~~~~~~W~~e~~ksaa~fDRiLlDaPCSg~Gvi--------rR~PD~kw~~~~~diA~L~~LQ~~iL~ai 394 (487)
T TIGR00563 323 IIKVEEVDGDKAGPKEWLAEVEKSAAQFDRILLDAPCSGTGVI--------RRHPDIKWLRKPADIARLAELQKEILKAI 394 (487)
T ss_pred EEEEEEECCCCCCCCCCCCCCHHHHHHHCEEEECCCCCCCCCE--------EECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7887720256776654445201023331421560787744330--------01787555668565178999999999988
Q ss_pred HHHCCCCCEEEE
Q ss_conf 985378878999
Q gi|254780875|r 214 SRHLNKDGLCSV 225 (264)
Q Consensus 214 ~~~L~~~G~l~l 225 (264)
..++|+||.|+.
T Consensus 395 aP~vK~GGtLvY 406 (487)
T TIGR00563 395 APLVKKGGTLVY 406 (487)
T ss_pred HHHHCCCCEEEE
T ss_conf 565357975888
No 192
>KOG3045 consensus
Probab=96.76 E-value=0.0048 Score=40.49 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=66.7
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 531012332110124686056642142112331222233321001333222002444201100012222222222222-2
Q gi|254780875|r 82 VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS-S 160 (264)
Q Consensus 82 v~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~-~ 160 (264)
++.++..+.. ..++..|.|+|||-+-|+. ..++ +|+..|.-+ +..+|. ..|+-. +
T Consensus 168 ld~ii~~ik~---r~~~~vIaD~GCGEakiA~----~~~~-kV~SfDL~a--------------~~~~V~--~cDm~~vP 223 (325)
T KOG3045 168 LDVIIRKIKR---RPKNIVIADFGCGEAKIAS----SERH-KVHSFDLVA--------------VNERVI--ACDMRNVP 223 (325)
T ss_pred HHHHHHHHHH---CCCCEEEEECCCCHHHHHH----CCCC-CEEEEEEEC--------------CCCCEE--ECCCCCCC
T ss_conf 9999999971---7676478853664233320----4666-504663002--------------788535--32244786
Q ss_pred C-CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EECC--CHHHHHH
Q ss_conf 2-1002333201133321001221111123575433210112321025689999985378878999-8176--6799999
Q gi|254780875|r 161 V-EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIGY--NQKVDVV 236 (264)
Q Consensus 161 ~-~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig~--~q~~~v~ 236 (264)
+ ++..|+.|+= ++|.| . .+..++..+.+.|++||.+++ ||-. .-.....
T Consensus 224 l~d~svDvaV~C----------------------LSLMg----t-n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~ 276 (325)
T KOG3045 224 LEDESVDVAVFC----------------------LSLMG----T-NLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFV 276 (325)
T ss_pred CCCCCCCEEEEE----------------------HHHHC----C-CHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHH
T ss_conf 766754478752----------------------75534----3-38999999988733586699986022134088999
Q ss_pred HHHHHCCCCEEEEEECCCC
Q ss_conf 9999789805899805689
Q gi|254780875|r 237 RIFESRKLFLVNAFKDYGG 255 (264)
Q Consensus 237 ~ll~~~gf~~v~~~kD~~g 255 (264)
+.+...||.. ..+|.++
T Consensus 277 r~l~~lGF~~--~~~d~~n 293 (325)
T KOG3045 277 RALTKLGFDV--KHKDVSN 293 (325)
T ss_pred HHHHHCCCEE--EEHHHHC
T ss_conf 9998728702--2110000
No 193
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=96.76 E-value=0.00018 Score=49.86 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC-------C-CCCCCCCCCCCCCCCC----
Q ss_conf 246860566421421123312222333210013332220024442011000-------1-2222222222222221----
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG-------V-SERFDTLQSDWFSSVE---- 162 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~-------~-~~~i~~~~~d~~~~~~---- 162 (264)
-++.-.++|||||.|.+.+-.|.+..-...+|+++.+.+.++|+.+...+. . ...+++.++|+++...
T Consensus 40 l~~~dvF~DLGSGVGnvv~QaAl~tgc~~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~~l~~gdFl~~~~~~~~ 119 (205)
T pfam08123 40 LGPQDVFVDLGSGVGNCVLQAALEFGCKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKIEFIRGSFLDNERVEEI 119 (205)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 89768899858883299999998709653888886566899999999999999999588768738997777885889986
Q ss_pred -CHHHHHHHC
Q ss_conf -002333201
Q gi|254780875|r 163 -GLFDVIVSN 171 (264)
Q Consensus 163 -~~fD~IvsN 171 (264)
.+-|+|+.|
T Consensus 120 ~~~a~VI~vN 129 (205)
T pfam08123 120 IPEADVILVN 129 (205)
T ss_pred HCCCCEEEEE
T ss_conf 3479889994
No 194
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.75 E-value=0.00086 Score=45.39 Aligned_cols=128 Identities=19% Similarity=0.265 Sum_probs=81.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 767750462051223565553101233211012468605664214211233122-2233321001333222002444201
Q gi|254780875|r 63 VRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALL-KESPFFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 63 ~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la-~~~~~~~v~~~Dis~~al~~A~~N~ 141 (264)
..+.|.. +.| -+-.++...... .....++-|||+|-|+|.+.=++. +..+...++++|.|++.+..-++-.
T Consensus 22 ~PrtVGa--I~P--sSs~lA~~M~s~----I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~ 93 (194)
T COG3963 22 NPRTVGA--ILP--SSSILARKMASV----IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY 93 (194)
T ss_pred CCCEEEE--ECC--CCHHHHHHHHHC----CCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHC
T ss_conf 9731113--557--857999999843----48445976477769866768999965799543689982779999999758
Q ss_pred CCCCCCCCCCCCCCCCCCC-------CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1000122222222222222-------210023332011333210012211111235754332101123210256899999
Q gi|254780875|r 142 VTNGVSERFDTLQSDWFSS-------VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVS 214 (264)
Q Consensus 142 ~~~~~~~~i~~~~~d~~~~-------~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~ 214 (264)
.-+.+++||.++- ....||.|+|--|.. +.+..++ -+|++...
T Consensus 94 ------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll------~~P~~~~------------------iaile~~~ 143 (194)
T COG3963 94 ------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL------NFPMHRR------------------IAILESLL 143 (194)
T ss_pred ------CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC------CCCHHHH------------------HHHHHHHH
T ss_conf ------87513054056578778652797401688656002------4867789------------------99999999
Q ss_pred HHCCCCCEEE-EEEC
Q ss_conf 8537887899-9817
Q gi|254780875|r 215 RHLNKDGLCS-VEIG 228 (264)
Q Consensus 215 ~~L~~~G~l~-lEig 228 (264)
..|-.||.++ |..|
T Consensus 144 ~rl~~gg~lvqftYg 158 (194)
T COG3963 144 YRLPAGGPLVQFTYG 158 (194)
T ss_pred HHCCCCCEEEEEEEC
T ss_conf 856899727999846
No 195
>KOG3201 consensus
Probab=96.74 E-value=0.00062 Score=46.32 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC--CCC
Q ss_conf 2235655531012332110124686056642142-1123312222333210013332220024442011000122--222
Q gi|254780875|r 75 RPETELLVDSALAFSLPRIEKRDVVRILDLGTGT-GAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSE--RFD 151 (264)
Q Consensus 75 RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~Gs-G~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~--~i~ 151 (264)
-|-.|.|.-.+|.. ..+-...+||++|-|- |--++.+|...|...|.-+|=+.+++.-.++-...|.... ++.
T Consensus 11 wpseeala~~~l~~----~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~ 86 (201)
T KOG3201 11 WPSEEALAWTILRD----PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC 86 (201)
T ss_pred CCCHHHHHHHHHHC----HHHHHHHHHHHHCCCHHHHHHHHEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEH
T ss_conf 65599999999806----06776788987267446554552045358735887169789999799998512002565000
Q ss_pred CCCCCCCC----CCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 22222222----22100233320113332100122111112357543321011232102568999998537887899981
Q gi|254780875|r 152 TLQSDWFS----SVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI 227 (264)
Q Consensus 152 ~~~~d~~~----~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi 227 (264)
...-++.. ....+||+|+|- |- .-|. ++-+.+++.+..+|+|.|..++ .
T Consensus 87 vlrw~~~~aqsq~eq~tFDiIlaA-------DC-------lFfd------------E~h~sLvdtIk~lL~p~g~Al~-f 139 (201)
T KOG3201 87 VLRWLIWGAQSQQEQHTFDIILAA-------DC-------LFFD------------EHHESLVDTIKSLLRPSGRALL-F 139 (201)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEC-------CC-------HHHH------------HHHHHHHHHHHHHHCCCCCEEE-E
T ss_conf 347877644888751702279860-------10-------2588------------9999999999998584666167-6
Q ss_pred CCCHHHHHHHHH---HHCCCCEEEEEECC
Q ss_conf 766799999999---97898058998056
Q gi|254780875|r 228 GYNQKVDVVRIF---ESRKLFLVNAFKDY 253 (264)
Q Consensus 228 g~~q~~~v~~ll---~~~gf~~v~~~kD~ 253 (264)
.+..++.+.+++ ...||. +....+|
T Consensus 140 sPRRg~sL~kF~de~~~~gf~-v~l~eny 167 (201)
T KOG3201 140 SPRRGQSLQKFLDEVGTVGFT-VCLEENY 167 (201)
T ss_pred CCCCCCHHHHHHHHHHHCEEE-EEECCCH
T ss_conf 675555699999998754069-9953567
No 196
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=96.73 E-value=0.0013 Score=44.32 Aligned_cols=104 Identities=23% Similarity=0.225 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCCCCCCC---CCC-CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHC
Q ss_conf 6860566421421123312---222-333210013332220024442011000122222222222222-21002333201
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLAL---LKE-SPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-VEGLFDVIVSN 171 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~l---a~~-~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-~~~~fD~IvsN 171 (264)
....|+=+|+|=|.+.-+. +.+ .-..+++|+|+++.|+-.-+.-+...+..++|+++.+|+.+. .+.++|++||-
T Consensus 186 ~~~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~~p~k~Di~VSE 265 (447)
T pfam05185 186 GTLVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWKGPEKADILVSE 265 (447)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCEEEEE
T ss_conf 75699998589648999999999981996699999568779999999850543178069990800057998773589752
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 13332100122111112357543321011232102568999998537887899
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS 224 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~ 224 (264)
|--+ ||. +-|. -+-+..+.++|||+|..+
T Consensus 266 -----------LLGS----------FGD-NELS--PECLdg~q~~lk~~gIsI 294 (447)
T pfam05185 266 -----------LLGS----------FGD-NELS--PECLDGAQRFLKPDGISI 294 (447)
T ss_pred -----------CCCC----------CCC-CCCC--HHHHHHHHHHCCCCCEEE
T ss_conf -----------1166----------666-5579--778778997468984682
No 197
>KOG3987 consensus
Probab=96.70 E-value=0.0031 Score=41.74 Aligned_cols=120 Identities=22% Similarity=0.380 Sum_probs=71.5
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCH
Q ss_conf 12468605664214211233122223332100133322200244420110001222222222222222100233320113
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPP 173 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPP 173 (264)
.+..+.++||+|.|-|-|..-++-.+. .|+|++.|..+..--++. .+++-.-+ +|.+ .+-+||+|.|
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk--~ynVl~~~-----ew~~-t~~k~dli~c--- 175 (288)
T KOG3987 109 WGQEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK--NYNVLTEI-----EWLQ-TDVKLDLILC--- 175 (288)
T ss_pred CCCCCEEEEECCCCCCCHHHHHCCHHH--HHHHHHHHHHHHHHHHHC--CCCEEEEH-----HHHH-CCCEEEHHHH---
T ss_conf 589870688616788610012142189--999987669999998652--77366500-----3331-3722315888---
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCEEEE----------EE---------------
Q ss_conf 3321001221111123575433210112321025689999985378-878999----------81---------------
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNK-DGLCSV----------EI--------------- 227 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~-~G~l~l----------Ei--------------- 227 (264)
.+-++ +.|.| -++++.....|.| +|.+++ |.
T Consensus 176 ------lNlLD---Rc~~p--------------~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~ 232 (288)
T KOG3987 176 ------LNLLD---RCFDP--------------FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLEN 232 (288)
T ss_pred ------HHHHH---HHCCH--------------HHHHHHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHH
T ss_conf ------77887---50676--------------77999999984647884899998424211430789986880688873
Q ss_pred -CC---CHHHHHHHHHHHCCCCEEEEE
Q ss_conf -76---679999999997898058998
Q gi|254780875|r 228 -GY---NQKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 228 -g~---~q~~~v~~ll~~~gf~~v~~~ 250 (264)
|. .|.....+++++.||. |+.+
T Consensus 233 ~Gr~~ee~v~~~~e~lr~~g~~-veaw 258 (288)
T KOG3987 233 NGRSFEEEVARFMELLRNCGYR-VEAW 258 (288)
T ss_pred CCCCHHHHHHHHHHHHHHCCCH-HHHH
T ss_conf 5853899998899999863702-4455
No 198
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=96.69 E-value=0.0039 Score=41.10 Aligned_cols=149 Identities=16% Similarity=0.009 Sum_probs=77.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC----CCCCCCCC---CCCCCC--CCCC----
Q ss_conf 4686056642142112331222233321001333222002444201100----01222222---222222--2221----
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN----GVSERFDT---LQSDWF--SSVE---- 162 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~----~~~~~i~~---~~~d~~--~~~~---- 162 (264)
.+.-+.||+|||.-.-.+.-|.++- -.++..|.++...+.-++-.++- ..+..++. ..|+.. +..+
T Consensus 55 ~kg~~LiDvG~GPtiy~~lsA~~~f-~~I~lsDy~~~Nr~el~kWl~~ep~afDWs~~~~~v~~lEG~~~~~~e~ee~lR 133 (261)
T pfam01234 55 VKGDTLIDIGSGPTIYQLLSACEVF-KEIHLSDYLPQNRDELIKWLKKEPGAFDWSPVLKHICELEGDRECWQEKEEKLR 133 (261)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHC-CEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 4666899847894588887677650-717860255767999999970699866661999999862267641578889999
Q ss_pred ----C--HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE---------E
Q ss_conf ----0--023332011333210012211111235754332101123210256899999853788789998---------1
Q gi|254780875|r 163 ----G--LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE---------I 227 (264)
Q Consensus 163 ----~--~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE---------i 227 (264)
. +.|+--+||= -+...... -++.- -...|.+--.-++-|++.+++...+|||||.|++- .
T Consensus 134 ~~Ik~Vl~cDV~~~~pl-~~~~~lp~--~D~v~--S~~cLE~ac~d~~~Y~~av~ni~~LLkpGG~Lil~gvl~~t~Y~v 208 (261)
T pfam01234 134 ALVKRVLKCDVHQSPPL-GAGVQLPP--ADCVV--TIFCLEYACPDLEEYCRALRNLASLLKPGGHLVLGGVLEESWYMF 208 (261)
T ss_pred HHHHEEEECCCCCCCCC-CCCCCCCC--CCEEE--EEEEHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEE
T ss_conf 88644887655688888-88666788--55884--762255661999999999999986478884699998617734887
Q ss_pred CC-------CHHHHHHHHHHHCCCCEEEEE
Q ss_conf 76-------679999999997898058998
Q gi|254780875|r 228 GY-------NQKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 228 g~-------~q~~~v~~ll~~~gf~~v~~~ 250 (264)
|. -..+.+.+.+.+.||...+..
T Consensus 209 G~~~F~~l~l~ee~v~~Al~~aG~~i~~~~ 238 (261)
T pfam01234 209 GEKKFSCLYLSKEVVEDALVDAGLDVEALQ 238 (261)
T ss_pred CCEECCEEECCHHHHHHHHHHCCCEEEEEE
T ss_conf 898602252289999999997797789978
No 199
>KOG1253 consensus
Probab=96.69 E-value=0.0005 Score=46.96 Aligned_cols=76 Identities=29% Similarity=0.326 Sum_probs=63.9
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------CCCHH
Q ss_conf 012468605664214211233122223332-10013332220024442011000122222222222222------21002
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESPFF-KGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------VEGLF 165 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~~~-~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------~~~~f 165 (264)
....++++|||.=++||.-+|--|++.++. +|++-|.++.|++..++|++.|+.++.++..++|.-.- ....|
T Consensus 105 ~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253 105 KREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 43267500898764551788899887042453103678777889998665506732211244102778987564521246
Q ss_pred HHH
Q ss_conf 333
Q gi|254780875|r 166 DVI 168 (264)
Q Consensus 166 D~I 168 (264)
|+|
T Consensus 185 DvI 187 (525)
T KOG1253 185 DVI 187 (525)
T ss_pred CEE
T ss_conf 667
No 200
>TIGR00497 hsdM type I restriction-modification system, M subunit; InterPro: IPR004546 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the M subunit (HsdM) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC. The M subunit (HsdM) functions in methylation of specific adenine residues, which is required for both restriction and modification activities , , . Methylation of specific residues prevents the host from digesting its own genome via its restriction enzymes. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=96.66 E-value=0.00048 Score=47.08 Aligned_cols=170 Identities=19% Similarity=0.256 Sum_probs=101.9
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHCC
Q ss_conf 504620512235655531012332110124686056642142112331222233-----321001333222002444201
Q gi|254780875|r 67 LSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP-----FFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 67 v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~-----~~~v~~~Dis~~al~~A~~N~ 141 (264)
-....+.|..-+|++...++. .....-.+.|.|||+|.+.+.+.+-.. ....+|-+++.....+++.|.
T Consensus 199 ~gg~~~~p~~~~~~~~~~~~~------~~~~~~~~~d~~cg~g~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~c~~~~ 272 (516)
T TIGR00497 199 SGGEFFTPQDVSELLAKIALG------GKDTVDDVYDPCCGSGSLLLQFSKVLGKDKNSLKGYFGQEINLTTYNLCRLNL 272 (516)
T ss_pred CCCCCCCHHHHHHHHHHHHCC------CCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCHHCCHHHHHHHHHH
T ss_conf 666544625589898876404------52002344431047513677878773231011222202100110344555545
Q ss_pred CCCCCC-CCCCCCCCCCCCC-----------CCCHHHHHHHCCHHHHHH--CC-CCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 100012-2222222222222-----------210023332011333210--01-22111112357543321011232102
Q gi|254780875|r 142 VTNGVS-ERFDTLQSDWFSS-----------VEGLFDVIVSNPPYIESV--IV-DCLGLEVRDFDPRISLDGGIDGLSHY 206 (264)
Q Consensus 142 ~~~~~~-~~i~~~~~d~~~~-----------~~~~fD~IvsNPPYI~~~--~~-~~l~~~v~~~EP~~AL~gg~dGl~~~ 206 (264)
-.+.+. .+..+.++|.+.. .++.||.+++||||-..- +. ..+-.+ ..|.|.-.|..... ..+
T Consensus 273 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~c~~~~~~~~~~~~pp~~~~w~gd~~~~~~~d-~~~~~~g~~~p~~~--~d~ 349 (516)
T TIGR00497 273 FLHDIDYANFNIANGDTLLDPEWEKHYVNCSDDEGFDAVVSNPPYSTKWAGDKNPNLVND-ERFKPAGTLAPNNK--ADL 349 (516)
T ss_pred HHHHCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECC-CCCCCCCCCCCCCH--HHH
T ss_conf 553123001000023100362012100124677773245537874200046654420010-10253322265511--358
Q ss_pred HHHHHHHHHHCCCCCEEEE-EEC-----CCHHHHHHHHHHHCCCCE
Q ss_conf 5689999985378878999-817-----667999999999789805
Q gi|254780875|r 207 RTIADGVSRHLNKDGLCSV-EIG-----YNQKVDVVRIFESRKLFL 246 (264)
Q Consensus 207 ~~ii~~~~~~L~~~G~l~l-Eig-----~~q~~~v~~ll~~~gf~~ 246 (264)
.+.-.+..+|...|...+ ++. ......+.+.+.+.++..
T Consensus 350 -~~~~~~~~~~~~~g~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~d 394 (516)
T TIGR00497 350 -AFTLHALYYLGNEGTAAIVCFPGVLYRGGKEAKIREYLVDENFVD 394 (516)
T ss_pred -HHHHHHHHHHCCCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHH
T ss_conf -888889887325664232221421103750356887764201345
No 201
>KOG1122 consensus
Probab=96.61 E-value=0.0031 Score=41.71 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=98.9
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCHHHH
Q ss_conf 01246860566421421123312222333-210013332220024442011000122222222222222----2100233
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESPF-FKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEGLFDV 167 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~~-~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~~fD~ 167 (264)
...+++-||||+|+--|-=...+|...++ -.|+|-|.+..-++.-+.|++++|+.+-+ +.+.|..++ +.+.||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~nti-v~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTI-VSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCCCEECCHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCE
T ss_conf 07998871121210799507789998727746996135437799999889974877448-97367632553336764231
Q ss_pred HHHCCHHHHHHCCC--------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE---EECCCHHHHHH
Q ss_conf 32011333210012--------21111123575433210112321025689999985378878999---81766799999
Q gi|254780875|r 168 IVSNPPYIESVIVD--------CLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV---EIGYNQKVDVV 236 (264)
Q Consensus 168 IvsNPPYI~~~~~~--------~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l---Eig~~q~~~v~ 236 (264)
|+-.-|--.+.... ....++..|- ..-|+++..|.+.+++||+++. -|....-+.+.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~------------~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV 383 (460)
T KOG1122 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYA------------HLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVV 383 (460)
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH------------HHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHH
T ss_conf 45348777775554551013301299998727------------999999999873115770899985322601228999
Q ss_pred HHH-HHC-CCCEEEEEECCCCCCE
Q ss_conf 999-978-9805899805689975
Q gi|254780875|r 237 RIF-ESR-KLFLVNAFKDYGGNDR 258 (264)
Q Consensus 237 ~ll-~~~-gf~~v~~~kD~~g~~R 258 (264)
+++ ++. .++.+.+.-|+.|--|
T Consensus 384 ~yaL~K~p~~kL~p~~~~iG~~G~ 407 (460)
T KOG1122 384 DYALKKRPEVKLVPTGLDIGGEGR 407 (460)
T ss_pred HHHHHHCCCEEECCCCCCCCCCCC
T ss_conf 999970986275256566788876
No 202
>pfam01269 Fibrillarin Fibrillarin.
Probab=96.60 E-value=0.0098 Score=38.43 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCH----HHHHHCCCCCCCCCCCCCCCCCCCCC-----CC
Q ss_conf 012468605664214211233122223-332100133322200----24442011000122222222222222-----21
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKAL----EIAKSNAVTNGVSERFDTLQSDWFSS-----VE 162 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al----~~A~~N~~~~~~~~~i~~~~~d~~~~-----~~ 162 (264)
..-+++.+||=||++||.-.--++.-. ++-.|+|+|.|+.+. .+|++- .|+--+.+|.-.+ +-
T Consensus 69 ~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R-------~NIvPIl~DAr~P~~Y~~lv 141 (229)
T pfam01269 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKR-------PNIVPILEDARHPQKYRMLV 141 (229)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCC-------CCCEEEECCCCCHHHHHHHC
T ss_conf 68589987999447779857678872288953999971735578999997427-------99445766778756765425
Q ss_pred CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC---------C-HH
Q ss_conf 0023332011333210012211111235754332101123210256899999853788789998176---------6-79
Q gi|254780875|r 163 GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY---------N-QK 232 (264)
Q Consensus 163 ~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~---------~-q~ 232 (264)
++.|+|.+. |.. |.. .+-++.++..+|++||.+++-+-. . -.
T Consensus 142 ~~VD~ifqD---------------vaQ--~~Q-----------a~i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf 193 (229)
T pfam01269 142 EMVDVIFAD---------------VAQ--PDQ-----------ARILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVF 193 (229)
T ss_pred CCCCEEEEC---------------CCC--HHH-----------HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHH
T ss_conf 566689962---------------787--778-----------9999999998612698899999713421678989999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCE
Q ss_conf 99999999789805899805689975
Q gi|254780875|r 233 VDVVRIFESRKLFLVNAFKDYGGNDR 258 (264)
Q Consensus 233 ~~v~~ll~~~gf~~v~~~kD~~g~~R 258 (264)
.+..+.|++.||..++.. |+.+.+|
T Consensus 194 ~~e~~~L~~~~~~~~e~i-~L~py~~ 218 (229)
T pfam01269 194 AREVEKLKEEGFKPKEQV-TLEPYER 218 (229)
T ss_pred HHHHHHHHHCCCCEEEEE-CCCCCCC
T ss_conf 999999987699658998-0577778
No 203
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=96.56 E-value=0.0036 Score=41.33 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=99.6
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCC
Q ss_conf 75046205122356555310123321101246860566421421123312222333210013-33222002444201100
Q gi|254780875|r 66 TLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGV-DISCKALEIAKSNAVTN 144 (264)
Q Consensus 66 ~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~-Dis~~al~~A~~N~~~~ 144 (264)
+..|+.+.|+--. ..+.. .....+..++|-.||+|.+.+... .-+.+.+++ |+......-++.|...+
T Consensus 181 ~~~p~~~~p~~~~-----~~~~~----~~~~~g~~~~dp~~g~gg~~~~~g--l~g~~~~g~gd~~~~~~~g~~~~l~~~ 249 (358)
T TIGR01177 181 FFKPGSLDPKLAR-----ALVNL----AGVKEGDRLLDPFCGTGGFLIEAG--LLGAKPIGCGDLDWKLVEGARLNLEHY 249 (358)
T ss_pred CCCCCCCCHHHHH-----HHHHH----HHCCCCCCEECCCCCCCCHHHHHH--HHCCCCCCCCHHHHHHHCCCHHHHHHC
T ss_conf 3256555546777-----77654----202467510042226660332333--321100024403567642521113330
Q ss_pred CCCCC-CCCCCCCCCC---CC-C--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 01222-2222222222---22-1--0023332011333210012211111235754332101123210256899999853
Q gi|254780875|r 145 GVSER-FDTLQSDWFS---SV-E--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHL 217 (264)
Q Consensus 145 ~~~~~-i~~~~~d~~~---~~-~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L 217 (264)
+..++ ..+..+|.-. .. . +.+|.++..|||-....... .+-...+++.+......+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~g~~~~~~~-----------------~~~~~l~~~~~~~~~~~~ 312 (358)
T TIGR01177 250 GIEDKVFSVKRGDAKDLPLRLPGLDESVDAIATDPPYGRSTTAAG-----------------DGLEELYEKSLEELHEVL 312 (358)
T ss_pred CCCCCEEEEEECCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC-----------------HHHHHHHHHHHHHHHHHH
T ss_conf 554315676403300111003531011222212565453111221-----------------036888888888888864
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 78878999817667999999999789805899
Q gi|254780875|r 218 NKDGLCSVEIGYNQKVDVVRIFESRKLFLVNA 249 (264)
Q Consensus 218 ~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~ 249 (264)
+++|+..+-... ..+....+...||.....
T Consensus 313 ~~~g~~~~~~~~--~~~~~~~~~~~g~~~~~~ 342 (358)
T TIGR01177 313 KGGGWLAVAVPT--DLDLESLAEGAGFKVVGR 342 (358)
T ss_pred CCCCCEEEEEEC--CCCHHHHHHHCCCHHHHH
T ss_conf 268717997403--346466541101012234
No 204
>pfam11968 DUF3321 Protein of unknown function (DUF3321). This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.47 E-value=0.019 Score=36.53 Aligned_cols=129 Identities=20% Similarity=0.277 Sum_probs=75.8
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55531012332110124686056642142112331222233321001333222002444201100012222222222222
Q gi|254780875|r 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159 (264)
Q Consensus 80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~ 159 (264)
.||+|.-...........+++.||+||=|---.++ ..+-..|+.||.+.. .-+ +.+.|+++
T Consensus 35 ~lv~wL~~~~~~~~~~~~~lr~LEVGALst~N~~S---~~~~~dv~rIDLnSq----------~p~------I~qqDFme 95 (220)
T pfam11968 35 VLVEWLKPLLVRLKLGEGKLRALEVGALSTKNACS---KSGLFDVTRIDLNSQ----------EPG------ILQQDFME 95 (220)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHC---CCCEEEEEEEECCCC----------CCC------CHHHHHHH
T ss_conf 99999777357722377763177554556421222---567477788525899----------987------14432440
Q ss_pred -----CCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-----EEEEEEC-
Q ss_conf -----22100233320113332100122111112357543321011232102568999998537887-----8999817-
Q gi|254780875|r 160 -----SVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDG-----LCSVEIG- 228 (264)
Q Consensus 160 -----~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G-----~l~lEig- 228 (264)
.-.++||+|.|- =|++|-|.-+.-| +.+.-..++|+|+| ++++...
T Consensus 96 rPlP~~e~e~F~iISlS--------------LVLNfVP~~~~RG---------eML~r~~~fL~~~~~~~~~~lFlVLPl 152 (220)
T pfam11968 96 RPLPKDESEKFDIISLS--------------LVLNFVPDPADRG---------EMLKRTTKFLRPPGPGSPPSLFLVLPL 152 (220)
T ss_pred CCCCCCCCCCCCEEEEE--------------EEEECCCCHHHHH---------HHHHHHHHHHCCCCCCCCCEEEEEEEH
T ss_conf 77888831141358887--------------7774169878886---------999999997179976666326887324
Q ss_pred -------CCHHHHHHHHHHHCCCCEEEEE
Q ss_conf -------6679999999997898058998
Q gi|254780875|r 229 -------YNQKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 229 -------~~q~~~v~~ll~~~gf~~v~~~ 250 (264)
|--.+.+.+++...||..++..
T Consensus 153 pCv~NSRY~~~~~l~~im~slGf~~~~~k 181 (220)
T pfam11968 153 PCVTNSRYMDEERLQAIMSSLGFVLVKSK 181 (220)
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 56404400199999999996795588764
No 205
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=96.46 E-value=0.00048 Score=47.07 Aligned_cols=148 Identities=20% Similarity=0.259 Sum_probs=86.5
Q ss_pred EEEEEECC--CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHH
Q ss_conf 76775046--205122356555310123321101246860566421421123312222--33321001333222002444
Q gi|254780875|r 63 VRLTLSSD--TFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKE--SPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 63 ~~f~v~~~--vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~--~~~~~v~~~Dis~~al~~A~ 138 (264)
.-++-.|| .|=-|--+|+. +.++.. ...+.+.++.|-|||||-+...++.. ..-..+.|+|+++.++++|.
T Consensus 20 ~VL~sApG~P~FPVRLAsEif-qRal~~----~~g~~p~tlwDpCCG~gYlLTvlgLLhr~~i~~v~aSDVd~~al~LA~ 94 (249)
T pfam11599 20 RVLHHAGGEPAFPVRLALEIF-ERALAR----LIGDAEISLWDCCCGGAYLLSILGLLHRNSIANLIASDIDPAPIELAA 94 (249)
T ss_pred EEEECCCCCCCCCHHHHHHHH-HHHHHH----CCCCCCCCEEECCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 376438999884189999999-999986----268887303305777118999999853157877774258878999998
Q ss_pred HCCCCCC---CCCCCC--------------------------------------CCCCCCCCCC------CC-HHHHHHH
Q ss_conf 2011000---122222--------------------------------------2222222222------10-0233320
Q gi|254780875|r 139 SNAVTNG---VSERFD--------------------------------------TLQSDWFSSV------EG-LFDVIVS 170 (264)
Q Consensus 139 ~N~~~~~---~~~~i~--------------------------------------~~~~d~~~~~------~~-~fD~Ivs 170 (264)
+|..... ++.|-. +...|+|++. .+ .-|+|+.
T Consensus 95 ~NL~LLt~~GL~~R~~eL~e~~~~f~k~s~~~aa~aA~Rl~~~l~a~gg~~p~~~~~ADvfdp~~l~~~~~g~~pDiVvT 174 (249)
T pfam11599 95 DNLALLSKAGINAREDELKALSERFGKASHIDAAHAADRIEELLTAEGGALPCAIKTADLFDGNALEACDAGFAPDIIIT 174 (249)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHHHHHCCCCCCEEEE
T ss_conf 64544032016778999999999848825788998889999998603899861210002358603677743788886884
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 11333210012211111235754332101123210256899999853788789998176679
Q gi|254780875|r 171 NPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK 232 (264)
Q Consensus 171 NPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~ 232 (264)
.-||=...+ ||-.. +.. -+..++......|-+.+.+.+.....|.
T Consensus 175 DlPYGe~t~----------Weg~~----~~~---~v~g~l~~l~~vlp~~aVv~V~~~~~~k 219 (249)
T pfam11599 175 DLPYGEMTE----------WEEQV----GAG---GIAGLLNALAAACGADAIIAVCMDKKQK 219 (249)
T ss_pred CCCCCCEEE----------ECCCC----CCC---CHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 378774002----------23778----997---6789999998657998089998168754
No 206
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=96.42 E-value=0.0035 Score=41.40 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 22100233320113332100122111112357543321011232102568999998537887899981766799999999
Q gi|254780875|r 160 SVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIF 239 (264)
Q Consensus 160 ~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll 239 (264)
.+.++||+||+.|||+..+ ++.+....+..+++++|++++--|..+.+-+.+++
T Consensus 81 ~l~~~fD~vi~DPPFLsee--------------------------c~~K~a~t~~~L~k~~~kli~~Tg~~~~~~~~kll 134 (161)
T pfam10237 81 QLKGKFDRVIADPPFLSEE--------------------------CLTKTAITIKLLLKPDSKLLLCTGERMEDLAAKLL 134 (161)
T ss_pred HHHCCCCEEEECCCCCCHH--------------------------HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHC
T ss_conf 9708678899899998999--------------------------99999999999808998799934899999999972
Q ss_pred HHCCCCEEEEE
Q ss_conf 97898058998
Q gi|254780875|r 240 ESRKLFLVNAF 250 (264)
Q Consensus 240 ~~~gf~~v~~~ 250 (264)
|+..+.+.
T Consensus 135 ---~~~~~~F~ 142 (161)
T pfam10237 135 ---GLKITDFL 142 (161)
T ss_pred ---CCEEEEEE
T ss_conf ---98241257
No 207
>PRK00536 speE spermidine synthase; Provisional
Probab=96.40 E-value=0.0069 Score=39.46 Aligned_cols=162 Identities=14% Similarity=0.041 Sum_probs=96.7
Q ss_pred CCCHHHH-CCCEEEEEEEEEEECCCCCHHHHH---HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9837685-363144237677504620512235---655531012332110124686056642142112331222233321
Q gi|254780875|r 48 HESIHRI-LGWRDFYNVRLTLSSDTFEPRPET---ELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFK 123 (264)
Q Consensus 48 g~Pl~YI-lg~~~F~~~~f~v~~~vLIPRpeT---E~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~ 123 (264)
..+-|.| +=+...+|.-+..|-.++.-|-|- |.|+-..+ ..-.++.+||=+|-|-|.++=-+++. + .+
T Consensus 25 kS~~Q~i~Ifet~~fGkvlvLDG~i~t~~~ef~YhEMl~Hvpl------~~Hp~Pk~VLIIGGGDGG~~REvlKH-~-~~ 96 (262)
T PRK00536 25 RSEHNILEIFKSKDFGEIAMLNKQLLFKNFLHIESELLAHMGG------CTKKELKEVLIVDGFDLELAHQLFKY-D-TH 96 (262)
T ss_pred CCCCEEEEEEECCCCCEEEEEECEEEEECHHHHHHHHHHCHHH------HCCCCCCEEEEECCCCHHHHHHHHCC-C-CE
T ss_conf 7887389999744633179980638986006788888753023------21899787999868755999998728-9-76
Q ss_pred CCCCCCCCCCHHHHHHCCCCC-C--CCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 001333222002444201100-0--1222222222222222100233320113332100122111112357543321011
Q gi|254780875|r 124 GVGVDISCKALEIAKSNAVTN-G--VSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGI 200 (264)
Q Consensus 124 v~~~Dis~~al~~A~~N~~~~-~--~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~ 200 (264)
++.+||++.-++++++-.-.. + -+.|+++.. .+.+...++||+|+.. .+.+
T Consensus 97 v~~VEID~~Vv~~sk~ylP~~~~~~~dpr~~~~~-~~~~~~~~~fDvIIvD----------sl~~--------------- 150 (262)
T PRK00536 97 VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIICL----------QEPD--------------- 150 (262)
T ss_pred EEEEEECHHHHHHHHHHCHHHHHHHCCCCEEHHH-HHHHHCCCCCCEEEEC----------CCCC---------------
T ss_conf 6999967899999999785656541399611399-9876154766889988----------9998---------------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEECC--CHHHHHHHHHHHCC--CCEEEE
Q ss_conf 23210256899999853788789998176--67999999999789--805899
Q gi|254780875|r 201 DGLSHYRTIADGVSRHLNKDGLCSVEIGY--NQKVDVVRIFESRK--LFLVNA 249 (264)
Q Consensus 201 dGl~~~~~ii~~~~~~L~~~G~l~lEig~--~q~~~v~~ll~~~g--f~~v~~ 249 (264)
..+ .+...+.|+++|.+....+. -|.+.+.+.++..+ |..+..
T Consensus 151 --~~~----~~~l~~~L~~~Gi~v~Q~esp~~~~~~~~~~~~~~~~~F~~~~~ 197 (262)
T PRK00536 151 --IHK----IDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGHFFSIAMP 197 (262)
T ss_pred --CCH----HHHHHHHHCCCCEEEECCCCHHHCHHHHHHHHHHHHHHCCEEEE
T ss_conf --054----99999985899899983897120799999999998865994599
No 208
>KOG1269 consensus
Probab=96.30 E-value=0.0031 Score=41.78 Aligned_cols=136 Identities=21% Similarity=0.139 Sum_probs=83.8
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHCC
Q ss_conf 246860566421421123312222333210013332220024442011000122222222222222--210023332011
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIVSNP 172 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~IvsNP 172 (264)
..+..+++|+|||.|-....++ .+..++++|+|.++.-+..++.-+...++.++..+..+|+... -++.||.+-+.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~-~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l- 185 (364)
T KOG1269 108 CFPGSKVLDVGTGVGGPSRYIA-VFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL- 185 (364)
T ss_pred CCCCCCCCCCCCCCCCHHHHHH-HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCCCCCCEEEE-
T ss_conf 7654111224767675167788-86257751787679999998877788876420235225551488774666748987-
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE---------------------EECC--
Q ss_conf 33321001221111123575433210112321025689999985378878999---------------------8176--
Q gi|254780875|r 173 PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV---------------------EIGY-- 229 (264)
Q Consensus 173 PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l---------------------Eig~-- 229 (264)
++..|-|. +- .......+.++|||..+. +|+.
T Consensus 186 -------------d~~~~~~~--------~~----~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd 240 (364)
T KOG1269 186 -------------EVVCHAPD--------LE----KVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGD 240 (364)
T ss_pred -------------EECCCCCC--------HH----HHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCEECCC
T ss_conf -------------61244786--------99----999988503677716884888876521479720110467363023
Q ss_pred -----CHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf -----6799999999978980589980568997
Q gi|254780875|r 230 -----NQKVDVVRIFESRKLFLVNAFKDYGGND 257 (264)
Q Consensus 230 -----~q~~~v~~ll~~~gf~~v~~~kD~~g~~ 257 (264)
....++.++++..+|..+...+|+...+
T Consensus 241 ~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~~~~ 273 (364)
T KOG1269 241 ALPAETFNTDVFDLLKSFGFEHLKLEKDLALKS 273 (364)
T ss_pred CCCCEECCCCHHHHHHHCCCHHHHHCCCCCCCC
T ss_conf 212301141399887650303422234335788
No 209
>KOG1501 consensus
Probab=96.30 E-value=0.0012 Score=44.36 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=47.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 860566421421123312222333210013332220024442011000122222222
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQ 154 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~ 154 (264)
..-+||+|||+|.+++..+..- .-.|+|++.=+-+.+.|++=.++||..++|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501 67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEECCCCCCHHHHHHHHHC-CCEEEEEHHHCHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 3899972688108999988735-7707752122218999999884188765226620
No 210
>PRK11524 putative methyltransferase; Provisional
Probab=96.27 E-value=0.0038 Score=41.16 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCHHHHHH
Q ss_conf 10013332220024442
Q gi|254780875|r 123 KGVGVDISCKALEIAKS 139 (264)
Q Consensus 123 ~v~~~Dis~~al~~A~~ 139 (264)
+.+|+|++++-+++|++
T Consensus 232 ~~IGiEi~~eY~~iA~~ 248 (284)
T PRK11524 232 KFIGIEINEEYIKMGLR 248 (284)
T ss_pred CEEEEECCHHHHHHHHH
T ss_conf 58999689999999999
No 211
>KOG3115 consensus
Probab=96.26 E-value=0.0055 Score=40.12 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC------CCCCCCCCCCCCCCCCCCHHH----
Q ss_conf 6860566421421123312222333210013332220024442011000------122222222222222210023----
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG------VSERFDTLQSDWFSSVEGLFD---- 166 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~------~~~~i~~~~~d~~~~~~~~fD---- 166 (264)
+...+.|+|||-|-+.+.|+-.+|+.-+.|.+|-.+--+..++.+.... --.++.+..++.+..+++-|.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred CCCEEEEECCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCCCHHHHCCC
T ss_conf 56427860467650101205468630122001268888999999999752654334565303421202205103431233
Q ss_pred --HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf --3320113332100122111112357543321011232102568999998537887899981
Q gi|254780875|r 167 --VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI 227 (264)
Q Consensus 167 --~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi 227 (264)
..++=| +-.... +.| .+.-.-..++....-+|+++|.++--.
T Consensus 140 skmff~fp----dpHfk~-----~kh----------k~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115 140 SKMFFLFP----DPHFKA-----RKH----------KWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred CCCEEECC----CHHHHH-----HHC----------CCEEECHHHHHHHHHHHHCCCEEEEEE
T ss_conf 44403258----805766-----521----------210120347987774221384489970
No 212
>pfam07669 Eco57I Eco57I restriction endonuclease. Homologues of the Escherichia coli Eco57I restriction endonuclease are found in several phylogenetically diverse bacteria.
Probab=96.24 E-value=0.0029 Score=41.92 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=38.5
Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC------CHHHHHHH
Q ss_conf 023332011333210012211111235754332101123210256899999853788789998176------67999999
Q gi|254780875|r 164 LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY------NQKVDVVR 237 (264)
Q Consensus 164 ~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~------~q~~~v~~ 237 (264)
+||+||.||||+..+....... ++..-.+.|..+++.+.++++ |.+.+-+.. .-.++.++
T Consensus 2 KFDvVIGNPPY~~~~~~~~~~~------------~~~~~~~iY~~F~e~a~~l~~--~~l~~I~P~rw~~~gkg~~~fR~ 67 (106)
T pfam07669 2 KFDVVIGNPPYQESDNDKEGGG------------GGNSAAPIYQLFVELALKLAP--KYLGMITPARWLFGGKGLKKFRE 67 (106)
T ss_pred CCCEEEECCCCCCCCCCCCCCC------------CCCCCCCHHHHHHHHHHHHCC--CCEEEEECCHHHHCCCCHHHHHH
T ss_conf 7588970899943357756567------------777787689999999998566--85699954610013886999999
Q ss_pred HHHH-CCCCEE
Q ss_conf 9997-898058
Q gi|254780875|r 238 IFES-RKLFLV 247 (264)
Q Consensus 238 ll~~-~gf~~v 247 (264)
.+.+ ..+..+
T Consensus 68 ~mL~d~~i~~i 78 (106)
T pfam07669 68 KMLNDKHLREL 78 (106)
T ss_pred HHHCCCCEEEE
T ss_conf 97568866699
No 213
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.20 E-value=0.017 Score=36.86 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHCCCHHHHHH-CCCCCCCHHHHHHHHHHHHH-----H--------HCCCCHHHHCCCEEEEEEEEEEECC
Q ss_conf 89999999983899989850-44885898999999999998-----9--------7498376853631442376775046
Q gi|254780875|r 5 RDSHSFLCRVTGLSSHQVIV-DPDSVLDDRQRFFLTNAIVR-----S--------LKHESIHRILGWRDFYNVRLTLSSD 70 (264)
Q Consensus 5 ~dA~~Ll~~~l~~~~~~l~~-~~~~~l~~~~~~~l~~~i~r-----r--------~~g~Pl~YIlg~~~F~~~~f~v~~~ 70 (264)
|-.+-+|+.+++-+..+=+. .++.+++ ....+.+.+.+ + .+|+-++-=+|-..++++.-.+-.|
T Consensus 22 R~Ve~vl~ail~~~d~wkIvd~s~~plp--~v~~i~~~l~~egiv~~~~g~v~~TekG~E~~e~~gi~~~~~~~C~~CeG 99 (354)
T COG1568 22 RSVENVLSAILATNDFWKIVDYSDLPLP--LVASILEILEDEGIVKIEEGGVELTEKGEELAEELGIKKKYDYTCECCEG 99 (354)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCCH--HHHHHHHHHHHCCCEEEECCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 8999999999747527757653158726--89999999986681898548476426269999984877466641466568
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCC--------------------------CCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 205122356555310123321101--------------------------246860566421421123312222333210
Q gi|254780875|r 71 TFEPRPETELLVDSALAFSLPRIE--------------------------KRDVVRILDLGTGTGAVCLALLKESPFFKG 124 (264)
Q Consensus 71 vLIPRpeTE~lv~~~l~~~~~~~~--------------------------~~~~~~vLDlG~GsG~i~i~la~~~~~~~v 124 (264)
.=||=.+-+.|.+..-+..+.++. ...+..|+=+| ---.-+|++|.....-++
T Consensus 100 rgi~l~~f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~i 178 (354)
T COG1568 100 RGISLQAFKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRI 178 (354)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC-CCHHHHHHHHHCCCCCEE
T ss_conf 6503531899999999998449986100135645753101344321104675787689970-750657889863887337
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHCCHHH
Q ss_conf 01333222002444201100012222222222222221----0023332011333
Q gi|254780875|r 125 VGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE----GLFDVIVSNPPYI 175 (264)
Q Consensus 125 ~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~----~~fD~IvsNPPYI 175 (264)
.-+||++.-++.-++-++..|+. +++.+.-|+-++++ .+||+++..|||-
T Consensus 179 aVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeT 232 (354)
T COG1568 179 AVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDLKRKFDVFITDPPET 232 (354)
T ss_pred EEEECHHHHHHHHHHHHHHHCCC-CHHHEEEHHCCCCHHHHHHHCCEEECCCHHH
T ss_conf 99831589999999999984833-1554030510458398885077643596335
No 214
>KOG2793 consensus
Probab=96.19 E-value=0.032 Score=35.02 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=69.6
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-----CCCCCCCCCCCCCCCC-----CCCH-H
Q ss_conf 686056642142112331222233321001333222002444201100-----0122222222222222-----2100-2
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN-----GVSERFDTLQSDWFSS-----VEGL-F 165 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~-----~~~~~i~~~~~d~~~~-----~~~~-f 165 (264)
+..++|++|+|+|..+++.|... .+++...|.... +..-+.|...+ +....+.+..-+|-+. ..+. |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred CCEEEEEECCCCCHHHHHHHHHH-CCEECCCCCHHH-HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCC
T ss_conf 64058996687558999999873-664512775026-7888886656566664037823699874688655755268765
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC--CCHHHHHHHHHHHC-
Q ss_conf 333201133321001221111123575433210112321025689999985378878999817--66799999999978-
Q gi|254780875|r 166 DVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG--YNQKVDVVRIFESR- 242 (264)
Q Consensus 166 D~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig--~~q~~~v~~ll~~~- 242 (264)
|+|++- ++ -|||+ .+..++.....+|..+|.++++.. .++..+...++.+.
T Consensus 164 Dlilas--------------Dv-vy~~~-----------~~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~~~ 217 (248)
T KOG2793 164 DLILAS--------------DV-VYEEE-----------SFEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFKKD 217 (248)
T ss_pred CEEEEE--------------EE-EECCC-----------CCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 579985--------------30-55177-----------61469999999974388489998600206778778875321
Q ss_pred -CCCEEEEEE
Q ss_conf -980589980
Q gi|254780875|r 243 -KLFLVNAFK 251 (264)
Q Consensus 243 -gf~~v~~~k 251 (264)
+...+....
T Consensus 218 ~~~~~v~~~~ 227 (248)
T KOG2793 218 LKIFDVVQES 227 (248)
T ss_pred HCCCEEEEEE
T ss_conf 0235366675
No 215
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.06 E-value=0.0055 Score=40.12 Aligned_cols=172 Identities=25% Similarity=0.284 Sum_probs=110.1
Q ss_pred CCCCHHHHCCCEEEEEEEEEEECCC----CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-C
Q ss_conf 4983768536314423767750462----0512235655531012332110124686056642142112331222233-3
Q gi|254780875|r 47 KHESIHRILGWRDFYNVRLTLSSDT----FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP-F 121 (264)
Q Consensus 47 ~g~Pl~YIlg~~~F~~~~f~v~~~v----LIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~-~ 121 (264)
...|.|.|.=.++=-+++++.|-|. ..----||-||--+++.. +...++|=+|-|-|-- +--..++| -
T Consensus 241 ~qspYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~------~~a~~vLvlGGGDGLA-lRellkyP~~ 313 (508)
T COG4262 241 IQSPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSV------RGARSVLVLGGGDGLA-LRELLKYPQV 313 (508)
T ss_pred CCCCCCEEEEEEECCCEEEEECCCEEEEECHHHHHHHEEEECCCCCC------CCCCEEEEECCCCHHH-HHHHHHCCCC
T ss_conf 25760057888715735899738612410214332111441241346------6642699972875187-9999718885
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCC-----C-CCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 210013332220024442011000-----1-222222222222222---1002333201133321001221111123575
Q gi|254780875|r 122 FKGVGVDISCKALEIAKSNAVTNG-----V-SERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDP 192 (264)
Q Consensus 122 ~~v~~~Dis~~al~~A~~N~~~~~-----~-~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP 192 (264)
.+++-+|.+|++++++++|...-. . +-|++++..|.++.+ .++||.++-.-| | |+ .|
T Consensus 314 ~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-----D-----P~----tp 379 (508)
T COG4262 314 EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-----D-----PS----TP 379 (508)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEECC-----C-----CC----CC
T ss_conf 5278974388999873002676660367766875699965478899741345557999689-----9-----89----95
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHH-----HHHHHHHHHCCCCE
Q ss_conf 4332101123210256899999853788789998176679-----99999999789805
Q gi|254780875|r 193 RISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK-----VDVVRIFESRKLFL 246 (264)
Q Consensus 193 ~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~-----~~v~~ll~~~gf~~ 246 (264)
.+| --...+ +-..++++|+++|.++..-|.... =.+..-+++.||..
T Consensus 380 s~~---rlYS~e----FY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~ 431 (508)
T COG4262 380 SIG---RLYSVE----FYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRV 431 (508)
T ss_pred CHH---HHHHHH----HHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEHHHHHHCCCEE
T ss_conf 134---321089----9999997337575499954887657730112054787376255
No 216
>PTZ00146 fibrillarin; Provisional
Probab=95.69 E-value=0.031 Score=35.19 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=76.4
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCC----HHHHHHCCCCCCCCCCCCCCCCCCCCC-----C
Q ss_conf 1012468605664214211233122223-33210013332220----024442011000122222222222222-----2
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKA----LEIAKSNAVTNGVSERFDTLQSDWFSS-----V 161 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~a----l~~A~~N~~~~~~~~~i~~~~~d~~~~-----~ 161 (264)
...-++..+||=||..||.-.--++.-. +.-.|+|+|.|+.+ +.+|++- .|+--+..|.-.+ +
T Consensus 130 ~i~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~R-------~NIvPIleDAr~P~kYr~l 202 (296)
T PTZ00146 130 SIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKRR-------TNIVPIIEDARYPQKYRML 202 (296)
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCC-------CCCEEEECCCCCHHHHHHH
T ss_conf 444379998998514679865566650178861999970646688999997227-------9833577778974675542
Q ss_pred CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCH----------
Q ss_conf 1002333201133321001221111123575433210112321025689999985378878999817667----------
Q gi|254780875|r 162 EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQ---------- 231 (264)
Q Consensus 162 ~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q---------- 231 (264)
-+..|+|++. |.+ |..| +-++.++..+||++|.+++-|-...
T Consensus 203 V~~VDvIf~D---------------VAQ--pdQa-----------rI~~~Na~~FLK~gG~~~i~IKArsIDst~~p~~V 254 (296)
T PTZ00146 203 VPMVDCIFAD---------------VAQ--PDQA-----------RIVALNAQHFLKNGGHFVISIKANCIDSTADPEVV 254 (296)
T ss_pred CCCCCEEEEC---------------CCC--HHHH-----------HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH
T ss_conf 4555589961---------------787--6589-----------99999999853169889999972663256798999
Q ss_pred HHHHHHHHHHCCCCEEEEE-ECCCCCCEEE
Q ss_conf 9999999997898058998-0568997599
Q gi|254780875|r 232 KVDVVRIFESRKLFLVNAF-KDYGGNDRVL 260 (264)
Q Consensus 232 ~~~v~~ll~~~gf~~v~~~-kD~~g~~R~v 260 (264)
..+-.+.|++.+|..++.. -|-+.++-++
T Consensus 255 F~~Ev~kL~~~~f~~~e~v~LePy~rdHa~ 284 (296)
T PTZ00146 255 FASEVQKLKKEGLKPKEQLTLEPFERDHAV 284 (296)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCEE
T ss_conf 999999998728963688704777788289
No 217
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=95.65 E-value=0.0021 Score=42.80 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=65.7
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-------C
Q ss_conf 0124686056642142112331222233---32100133322200244420110001222222222222222-------1
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESP---FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-------E 162 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~---~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-------~ 162 (264)
..+.+-+.|+|-=+|||.=+|--|.|.+ -.++++=||+|+|++.-+.|+..|++++ +++...|--..+ .
T Consensus 90 nrnePyi~~~dALSasGiRaiRya~E~~fngv~~v~~ND~~P~Ave~I~~N~~~N~v~N-~~v~n~Da~~~L~~~nkat~ 168 (462)
T TIGR00308 90 NRNEPYIEIADALSASGIRAIRYALEVEFNGVKKVFANDINPKAVESIKNNVKLNSVEN-IEVINEDAAAVLRKRNKATF 168 (462)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHCHHHC
T ss_conf 56543789998751040889999874465761067753477378899884123244227-65455037999875121123
Q ss_pred CHHHHHHHCC-----HHHHHH
Q ss_conf 0023332011-----333210
Q gi|254780875|r 163 GLFDVIVSNP-----PYIESV 178 (264)
Q Consensus 163 ~~fD~IvsNP-----PYI~~~ 178 (264)
++||+|==-| ||++..
T Consensus 169 ~~F~viDiDPFGspAPFvd~A 189 (462)
T TIGR00308 169 RKFEVIDIDPFGSPAPFVDSA 189 (462)
T ss_pred CCCCEEEECCCCCCCCHHHHH
T ss_conf 676437647877974158999
No 218
>pfam04672 DUF574 Protein of unknown function (DUF574). Family of uncharacterized proteins.
Probab=95.63 E-value=0.065 Score=33.03 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCCCC--CCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCHHH
Q ss_conf 860566421421123--31222-23332100133322200244420110001222222222222222--------10023
Q gi|254780875|r 98 VVRILDLGTGTGAVC--LALLK-ESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV--------EGLFD 166 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~--i~la~-~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~--------~~~fD 166 (264)
--.+||+|||--.-+ =-+|+ ..|.++|+-+|+++-++.-++.=...+ -+.+..++++|+.+.- .+.+|
T Consensus 70 IrQFLDlGsGlPT~~nvHeVAq~~~P~aRVVYVD~DPvvlaHaraLL~~~-~~~~t~~v~aDlrdp~~iL~~p~~~~~lD 148 (268)
T pfam04672 70 IRQFLDIGTGLPTEPNVHQVAQRVAPESRVVYVDNDPIVLTHARALLTST-PEGATDYIHADVRDPEEILEHPEARRTLD 148 (268)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCC-CCCCEEEEECCCCCHHHHHCCHHHHHHCC
T ss_conf 50577605699999972146673299863999889827999999995689-87746999777779899865987885378
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC-----CHHHHHHHHHHH
Q ss_conf 332011333210012211111235754332101123210256899999853788789998176-----679999999997
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY-----NQKVDVVRIFES 241 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~-----~q~~~v~~ll~~ 241 (264)
+= .-..-+...|..|=| .+ +....++......|.||.+|.+-|.. .+.+.+.+.+.+
T Consensus 149 ~~---------rPValll~~vLh~v~------D~---~~p~~iv~~l~d~l~pGS~L~ish~t~d~~p~~~~~~~~~~~~ 210 (268)
T pfam04672 149 FD---------RPVALSLVAILHFVP------DD---DDPYGIVRRLMDALPAGSYLVLSHGTSDLNPELVEAVADVYAK 210 (268)
T ss_pred CC---------CCCHHHHHHHHCCCC------CC---CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 78---------861345334434578------61---0499999999972699765999843588888899999999970
Q ss_pred CC
Q ss_conf 89
Q gi|254780875|r 242 RK 243 (264)
Q Consensus 242 ~g 243 (264)
.+
T Consensus 211 ~~ 212 (268)
T pfam04672 211 GG 212 (268)
T ss_pred CC
T ss_conf 79
No 219
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=95.41 E-value=0.009 Score=38.67 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=57.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHH
Q ss_conf 468605664214211233122223332100133322200244420110001222222222222222-10023332
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-EGLFDVIV 169 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-~~~fD~Iv 169 (264)
.++.+|+|+|||=-.+++--..+.+++..+|.||+...++....-....+++.++ ...|+.... .+..|+.+
T Consensus 101 ~~p~sVlDlaCGlNPLa~pwm~~~~~~~Y~a~DId~~~i~fi~~~l~~l~v~~~~--~~~Dl~~~~p~~~~DvaL 173 (248)
T pfam07091 101 PPPRSVLDLACGLNPLAVPWMPLAPDATYHAYDIDRALIEFIRAFLALLGVPGEV--RVRDLLTDPPAEPADVAL 173 (248)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCE--EEEEECCCCCCCCCCCHH
T ss_conf 9986442000268830142336899867999707778999999999862987637--987610479988734004
No 220
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=95.41 E-value=0.029 Score=35.36 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHCCCCC---CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 12235655531012332---11012468605664214211233122223332--10013332220024442011000122
Q gi|254780875|r 74 PRPETELLVDSALAFSL---PRIEKRDVVRILDLGTGTGAVCLALLKESPFF--KGVGVDISCKALEIAKSNAVTNGVSE 148 (264)
Q Consensus 74 PRpeTE~lv~~~l~~~~---~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~--~v~~~Dis~~al~~A~~N~~~~~~~~ 148 (264)
-+.||+.|-..+-.+.. .......-.+|+|.-+|-|-.+-+|.. .|-| +|+-++ ++..|.+-- .-|+
T Consensus 339 f~~D~~~Wk~~V~~Y~~l~~~~i~~~~~RNVMDMnA~~GGFAAAL~~-~~vWVMNVVP~~-~~nTL~vIy----dRGL-- 410 (506)
T pfam03141 339 FKADTELWKRRVSKYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALID-DPVWVMNVVPVD-SPDTLPVIY----DRGL-- 410 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCC-CCEEEEEECCCC-CCCCCCEEE----ECCC--
T ss_conf 89899999999999998740225567601222124442158898637-980499835589-998754587----5442--
Q ss_pred CCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 2222222222222---1002333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 149 RFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 149 ~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
+- .-.||-+++ +-.||+|=+|-= ...+. +.- .+..|+-+..+.|.|+|++++
T Consensus 411 -iG-~yHDWCE~FsTYPRTYDLlHA~~l------fS~~~----------------~rC-~~~dillEMDRILRP~G~vIi 465 (506)
T pfam03141 411 -IG-IYHDWCEPFSTYPRTYDLLHADHL------FSLYK----------------KRC-NLEDILLEMDRILRPGGAVII 465 (506)
T ss_pred -CC-EEECCCCCCCCCCCCHHHHHHHHH------HHHHC----------------CCC-CHHHHHHHHHHHCCCCCEEEE
T ss_conf -10-100224557888850777735323------47761----------------786-589999888760068814999
Q ss_pred EECCCHHHHHHHHHHHCCCCEE-EEEEC-CCCCCEEEEEEC
Q ss_conf 8176679999999997898058-99805-689975999979
Q gi|254780875|r 226 EIGYNQKVDVVRIFESRKLFLV-NAFKD-YGGNDRVLLFCR 264 (264)
Q Consensus 226 Eig~~q~~~v~~ll~~~gf~~v-~~~kD-~~g~~R~vi~~r 264 (264)
-=..+--.++.++++...+... .-.+| -.+.+|+++++|
T Consensus 466 RD~~~vl~~v~~i~~~m~W~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T pfam03141 466 RDDVDVLDKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506 (506)
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEC
T ss_conf 46799999999999738640698765668998713899869
No 221
>KOG4058 consensus
Probab=95.18 E-value=0.0074 Score=39.24 Aligned_cols=106 Identities=19% Similarity=0.267 Sum_probs=75.2
Q ss_pred CCCHHHHCCCEEEEEEEEEEECCCCCHH-HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9837685363144237677504620512-235655531012332110124686056642142112331222233321001
Q gi|254780875|r 48 HESIHRILGWRDFYNVRLTLSSDTFEPR-PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVG 126 (264)
Q Consensus 48 g~Pl~YIlg~~~F~~~~f~v~~~vLIPR-peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~ 126 (264)
|.-++--.-++.|-.--|. .+-+|- |-|..-++.++.+.. ..+.-+.+|+|+|-|-|-++.++.. --.-+|
T Consensus 29 g~gla~sav~a~fvaPafR---R~cvPYVpAtteQv~nVLSll~----~n~~GklvDlGSGDGRiVlaaar~g-~~~a~G 100 (199)
T KOG4058 29 GSGLAASAVWALFVAPAFR---RLCVPYVPATTEQVENVLSLLR----GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVG 100 (199)
T ss_pred CHHHHHHHHHHHHHHHHHH---EECCCCCCCCHHHHHHHHHHCC----CCCCCCEEECCCCCCEEEHHHHHHC-CCCCCC
T ss_conf 2058899999997347764---1025656730999999998714----8998817852589852446666507-776774
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33322200244420110001222222222222222
Q gi|254780875|r 127 VDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV 161 (264)
Q Consensus 127 ~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~ 161 (264)
++.++--+.+++-.+-+.|+..+..|..-|++..-
T Consensus 101 vELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058 101 VELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred EECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 33038999999999998742533102232110044
No 222
>KOG0822 consensus
Probab=95.03 E-value=0.025 Score=35.80 Aligned_cols=75 Identities=23% Similarity=0.186 Sum_probs=55.3
Q ss_pred CCCCCCEEEEECCCCCCCCCC---CCC-CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHH
Q ss_conf 246860566421421123312---222-33321001333222002444201100012222222222222221--002333
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLAL---LKE-SPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--GLFDVI 168 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~l---a~~-~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~I 168 (264)
.+....++=+|.|-|.+.-+. |.+ ....++++++++|.|+-.-+. .+....+++|+++.+|+....+ .+.|++
T Consensus 365 a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~ 443 (649)
T KOG0822 365 AKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADII 443 (649)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH-HCHHHHCCEEEEEECCCCCCCCCHHHCCCH
T ss_conf 4732899996388760788999999872471579999338544042454-243654681699934312468844421203
Q ss_pred HH
Q ss_conf 20
Q gi|254780875|r 169 VS 170 (264)
Q Consensus 169 vs 170 (264)
||
T Consensus 444 VS 445 (649)
T KOG0822 444 VS 445 (649)
T ss_pred HH
T ss_conf 99
No 223
>KOG2352 consensus
Probab=94.94 E-value=0.021 Score=36.24 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=74.3
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC---------CCHHH
Q ss_conf 468605664214211233122223332100133322200244420110001222222222222222---------10023
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV---------EGLFD 166 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~---------~~~fD 166 (264)
....++|=+|-|+|.++..+...+|.+.+++++++|.++++|..+.....-. |..+.-.|-++++ +..||
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred CCCCCEEEEECCCCCCCCCEEEECCCCCEEEEEECHHHHHCCHHHHCHHHHH-HHHHHHHHCHHHHHHHHHCCCCCCCCC
T ss_conf 5667579983287754002002057341159997816840557652535655-220037303599999861564466875
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 332011333210012211111235754332101123210256899999853788789998
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
++.-. ++..+.+.+.. |..|. .-..++...+..|.|.|.+++-
T Consensus 373 vl~~d---vds~d~~g~~~------pp~~f--------va~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352 373 VLMVD---VDSKDSHGMQC------PPPAF--------VAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEEEE---CCCCCCCCCCC------CCHHH--------HHHHHHHHHHHCCCCCCEEEEE
T ss_conf 79997---78998566728------96478--------7899988776106866348998
No 224
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.90 E-value=0.062 Score=33.15 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC-CCCC----CCCCHHHHHH
Q ss_conf 2468605664214211233122223332100133322200244420110001222222222-2222----2210023332
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS-DWFS----SVEGLFDVIV 169 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~-d~~~----~~~~~fD~Iv 169 (264)
..++..+||+|+-||-..-. +.++...+|+|+|+...-+..--+| +.|+..++. |+.. .+.+..|+++
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~-lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d~~v 149 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDV-LLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPDLIV 149 (245)
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHCCCCEEEEEECCCCCCCHHHHC------CCCEEEEECCCHHHCCHHHCCCCCCEEE
T ss_conf 88997899826787629999-9875874799997037743786735------9847998527831189878176778479
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE------EECCC-------------
Q ss_conf 01133321001221111123575433210112321025689999985378878999------81766-------------
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV------EIGYN------------- 230 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l------Eig~~------------- 230 (264)
|.--+|+- +.++......++++|.+++ |.|..
T Consensus 150 ~DvSFISL-----------------------------~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~ 200 (245)
T COG1189 150 IDVSFISL-----------------------------KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKL 200 (245)
T ss_pred EEEEHHHH-----------------------------HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEECCCCH
T ss_conf 96423319-----------------------------9888999974278863899736555540432276863448015
Q ss_pred H---HHHHHHHHHHCCCCEEEEE
Q ss_conf 7---9999999997898058998
Q gi|254780875|r 231 Q---KVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 231 q---~~~v~~ll~~~gf~~v~~~ 250 (264)
+ ..++.+++++.||....+.
T Consensus 201 ~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 201 HAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 89999999988864595786557
No 225
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.83 E-value=0.0083 Score=38.93 Aligned_cols=145 Identities=21% Similarity=0.202 Sum_probs=81.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCC-HHHHHHHC
Q ss_conf 6860566421421123312222333210013332220024442011000122222222222222----210-02333201
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEG-LFDVIVSN 171 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~-~fD~IvsN 171 (264)
...+++||+||.|.+.+.+...- ---+.++|+++.|++.-+.|... -.+.++|..+. +.+ .+|+++.-
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred CCCEEEEECCCCCHHHHHHHHCC-CEEEEEEECCHHHHHHHHHHCCC------CCCHHHHHHHHCHHHCCCCCCCEEEEC
T ss_conf 98549986587565889998649-84899874698899999985888------742030376605222355676379858
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC------C-CHHHHHHHHHHHCCC
Q ss_conf 133321001221111123575433210112321025689999985378878999817------6-679999999997898
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG------Y-NQKVDVVRIFESRKL 244 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig------~-~q~~~v~~ll~~~gf 244 (264)
||==+.+....- . ..-+|+..|+ ..+++.+ ..++| -++++|-= . .-.+.+.+.|++.||
T Consensus 75 pPCQ~FS~aG~r-~--~~~D~R~~L~---------~~~~r~I-~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY 140 (328)
T COG0270 75 PPCQDFSIAGKR-R--GYDDPRGSLF---------LEFIRLI-EQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGY 140 (328)
T ss_pred CCCCCHHHHCCC-C--CCCCCHHHHH---------HHHHHHH-HHHCC-CEEEEECCHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 997213340776-6--7767334769---------9999999-96389-8799966466665441699999999987588
Q ss_pred CEE-EE--EECC---CCCCEEEEE
Q ss_conf 058-99--8056---899759999
Q gi|254780875|r 245 FLV-NA--FKDY---GGNDRVLLF 262 (264)
Q Consensus 245 ~~v-~~--~kD~---~g~~R~vi~ 262 (264)
... .+ -+|+ +.++|+.+.
T Consensus 141 ~~~~~ilna~dyGvPQ~ReRvfii 164 (328)
T COG0270 141 GVEFNILNAADYGVPQSRERVFIV 164 (328)
T ss_pred CCCCEEECHHHCCCCCCCCEEEEE
T ss_conf 531403039885999865379999
No 226
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=94.80 E-value=0.07 Score=32.81 Aligned_cols=186 Identities=15% Similarity=0.143 Sum_probs=108.6
Q ss_pred CCCEEEEEEEEEEECCCCCHHHHHHHHHHHHC-----CCCCC-CCCCC--CCCCEEEEECCCCCCCCCCCC--CCCCCCC
Q ss_conf 36314423767750462051223565553101-----23321-10124--686056642142112331222--2333210
Q gi|254780875|r 55 LGWRDFYNVRLTLSSDTFEPRPETELLVDSAL-----AFSLP-RIEKR--DVVRILDLGTGTGAVCLALLK--ESPFFKG 124 (264)
Q Consensus 55 lg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l-----~~~~~-~~~~~--~~~~vLDlG~GsG~i~i~la~--~~~~~~v 124 (264)
+++..||+.+..-++--+=-=| |.|.-.-. +++-. .++.. ++.+|||++.-=|.=..-|+. ++.+ -|
T Consensus 29 ~~~~~~~~~~v~~s~~~iG~tP--EyL~G~y~~q~aSSmiPp~aL~p~Gn~~~~vlD~AAaPGgKTT~is~~m~N~G-~i 105 (284)
T TIGR00446 29 TCEEGFFIEEVKESPLSIGSTP--EYLLGYYYVQEASSMIPPLALEPEGNEKERVLDMAAAPGGKTTQISALMKNEG-AI 105 (284)
T ss_pred CCCCCEEEEEEECCCCCCCCCH--HHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCC-EE
T ss_conf 0027427765402677646516--78853789987873676030177876888799974088964899999865885-18
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCH----HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 013332220024442011000122222222222222--2100----2333201133321001221111123575433210
Q gi|254780875|r 125 VGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGL----FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDG 198 (264)
Q Consensus 125 ~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~----fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~g 198 (264)
+|.|+++.=++.-..|+.+.|+.+ +.+.+.|...+ .-.+ ||-|+=-=|=--.+.+..-+...+++-++--.
T Consensus 106 ~Ane~~ksR~k~L~~NI~R~G~~n-~~v~~~DgR~f~~~~~~~eifFD~iLLDAPCSG~GvI~KD~~~~~~~~~eD~~-- 182 (284)
T TIGR00446 106 VANEVSKSRTKVLIANINRMGVLN-VAVINVDGRKFGAVVLKMEIFFDRILLDAPCSGEGVIRKDPSRKKNRSEEDIL-- 182 (284)
T ss_pred EEECCCCCCCHHHHHHHHHHHHEE-EEEEECCCCHHHHHHCCCEEEEEEEEECCCCCCCCEEEECHHHHCCCCHHHHH--
T ss_conf 997376341066786555621003-33241376300123144303432145257879883376572331147724577--
Q ss_pred CCCCC-CCHHHHHHHHHHHCCC----CCEEEE---EECCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 11232-1025689999985378----878999---817667999999999789805899
Q gi|254780875|r 199 GIDGL-SHYRTIADGVSRHLNK----DGLCSV---EIGYNQKVDVVRIFESRKLFLVNA 249 (264)
Q Consensus 199 g~dGl-~~~~~ii~~~~~~L~~----~G~l~l---Eig~~q~~~v~~ll~~~gf~~v~~ 249 (264)
++ ..=|.++..|.+.|++ ||.++- -.....-|+|.+++.+.-=..+++
T Consensus 183 ---~~s~lQkeL~~~A~d~lk~nskhGGv~VYSTCsl~~eENE~V~dy~L~~r~~v~e~ 238 (284)
T TIGR00446 183 ---EISKLQKELILAAFDALKPNSKHGGVLVYSTCSLEVEENEEVVDYLLRKRPDVVEE 238 (284)
T ss_pred ---HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf ---64676799999998750445666888898503277122748999986179970775
No 227
>KOG2078 consensus
Probab=94.69 E-value=0.0093 Score=38.59 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=53.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 468605664214211233122223332100133322200244420110001222-222222222222
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSER-FDTLQSDWFSSV 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~-i~~~~~d~~~~~ 161 (264)
+.+-.+.|++||.|..++..+++ ++.|++-|.+++++++-+.|+..|.+... ++.+..|.-.++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078 248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CCCCHHHHHHCCCCCCCCCHHHC--CCEEEECCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHH
T ss_conf 87413344404767433502225--858993479978999999756536656136366446188874
No 228
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=94.53 E-value=0.012 Score=37.97 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 5553101233211012468605664214211233122223-33210013332220024442011000122222222222
Q gi|254780875|r 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDW 157 (264)
Q Consensus 80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~ 157 (264)
.|++.+++.+ ...+...++|.-.|.|--+-+++..+ |+.+++|+|.++.|++.|++....++ +|+.++++++
T Consensus 10 Vll~Evl~~L----~~~~~g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~a~~~l~~~~--~r~~~~~~nF 82 (309)
T PRK00050 10 VLLDEVVDGL----AIKPDGIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAAAKERLDPFG--GRFTIVHGNF 82 (309)
T ss_pred CCHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCH
T ss_conf 3189999836----82899999993889839999999727999889999898899999999865258--8289992779
No 229
>PRK13699 putative methylase; Provisional
Probab=94.43 E-value=0.01 Score=38.29 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=54.2
Q ss_pred CCCCCCCCCCC----CCHHHHHHHCCHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 22222222222----1002333201133321-001221111123575433210112321025689999985378878999
Q gi|254780875|r 151 DTLQSDWFSSV----EGLFDVIVSNPPYIES-VIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 151 ~~~~~d~~~~~----~~~fD~IvsNPPYI~~-~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
++++||.++.+ ++.+|+|++.|||--. .+.. ... ..++..-+.+...+.+..+.|+++|.++.
T Consensus 3 kii~GDcle~l~~lpd~SVDliiTDPPY~~g~~~~~--~~~----------~~~d~~~ew~~~~~~e~~Rvlk~~g~~~~ 70 (227)
T PRK13699 3 RFILGNCVDVMARFPDNAVDFILTDPPYLVGFRDRQ--GRT----------IAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CEEHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC--CCC----------CCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 443301999995288877297998989988987889--974----------45762089999999999999568816999
Q ss_pred EECCCHHHHHHHHHHHCCCCEE
Q ss_conf 8176679999999997898058
Q gi|254780875|r 226 EIGYNQKVDVVRIFESRKLFLV 247 (264)
Q Consensus 226 Eig~~q~~~v~~ll~~~gf~~v 247 (264)
-.+..+........+..||...
T Consensus 71 ~~~~~~~~~~~~~~~~~gf~~~ 92 (227)
T PRK13699 71 FYGWNRVDRFMAAWKNAGFSVV 92 (227)
T ss_pred EECCCHHHHHHHHHHHCCCCCC
T ss_conf 9331004699999997488661
No 230
>KOG2798 consensus
Probab=94.34 E-value=0.095 Score=31.94 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=39.1
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5553101233211012468605664214211233122223332100133322200244
Q gi|254780875|r 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIA 137 (264)
Q Consensus 80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A 137 (264)
.+++..-.+.......+...+||=-|||.|-++..||...+..++. +.|--++-+.
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S 188 (369)
T KOG2798 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICS 188 (369)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCC--HHHHHHHHHH
T ss_conf 4799987418986665558628814887116789988743333430--7899999999
No 231
>PRK11524 putative methyltransferase; Provisional
Probab=94.20 E-value=0.014 Score=37.48 Aligned_cols=10 Identities=50% Similarity=1.232 Sum_probs=3.3
Q ss_pred HHHHHHCCHH
Q ss_conf 2333201133
Q gi|254780875|r 165 FDVIVSNPPY 174 (264)
Q Consensus 165 fD~IvsNPPY 174 (264)
+|+|++-|||
T Consensus 28 IDLIiTDPPY 37 (284)
T PRK11524 28 VDLIFADPPY 37 (284)
T ss_pred CCEEEECCCC
T ss_conf 3879989999
No 232
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.13 E-value=0.02 Score=36.38 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=65.2
Q ss_pred HHHCCCEEE--EEEEEEEECCCCCHHHHHHHHHHHHCC------C--CCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCC
Q ss_conf 685363144--237677504620512235655531012------3--3211012468605664214-2112331222233
Q gi|254780875|r 52 HRILGWRDF--YNVRLTLSSDTFEPRPETELLVDSALA------F--SLPRIEKRDVVRILDLGTG-TGAVCLALLKESP 120 (264)
Q Consensus 52 ~YIlg~~~F--~~~~f~v~~~vLIPRpeTE~lv~~~l~------~--~~~~~~~~~~~~vLDlG~G-sG~i~i~la~~~~ 120 (264)
+-+.|+.-. |..-..|+..-+++=|+.--+...+.- . .++..+.++..+|+=.|+| .|.+++-+|+..-
T Consensus 111 ~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g 190 (339)
T COG1064 111 QKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG 190 (339)
T ss_pred CCCCCEEECCCCEEEEEECHHHEEECCCCCCHHHHHHHHCCEEEEEEEHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 66265560584211799765785888899986661154367005760046538999989999877489999999999869
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 321001333222002444201100012222222222222221002333201
Q gi|254780875|r 121 FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSN 171 (264)
Q Consensus 121 ~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsN 171 (264)
++|+++|+|++-.+.|++=...+-+ .....|..+...+.||+|+.-
T Consensus 191 -a~Via~~~~~~K~e~a~~lGAd~~i----~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 191 -AEVIAITRSEEKLELAKKLGADHVI----NSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred -CEEEEEECCHHHHHHHHHHCCCEEE----ECCCCHHHHHHHHHCCEEEEC
T ss_conf -9699995787799999984882899----767811667767347399998
No 233
>KOG4589 consensus
Probab=93.95 E-value=0.032 Score=35.10 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=68.5
Q ss_pred CCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCC-CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHCC
Q ss_conf 468605664214211233122-2233321001333222-0024442011000122222222222222210-023332011
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALL-KESPFFKGVGVDISCK-ALEIAKSNAVTNGVSERFDTLQSDWFSSVEG-LFDVIVSNP 172 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la-~~~~~~~v~~~Dis~~-al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~-~fD~IvsNP 172 (264)
++..+|||+||--|..+-... +-.|+..|.|+|+..- ++.-|.. ...+.+.+- -..-.+++.+++ +.|+|+|..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~-i~~~dvtdp--~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATI-IQGNDVTDP--ETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC-CCCCCCCCH--HHHHHHHHHCCCCCCCEEEECC
T ss_conf 8887799816788718999988628874288874331148887640-143246888--8999999867998321887135
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3332100122111112357543321011232102568999998537887899981766-799999999978980589980
Q gi|254780875|r 173 PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN-QKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 173 PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~-q~~~v~~ll~~~gf~~v~~~k 251 (264)
- + +..--.+++|+-.+-|+ ...+..+-..+.|+|.++.-+=.+ +...+.+.+. .-|..|+..|
T Consensus 145 a---p---naTGvr~~Dh~~~i~LC---------~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~-~~f~~Vk~vK 208 (232)
T KOG4589 145 A---P---NATGVRIRDHYRSIELC---------DSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQ-AVFTNVKKVK 208 (232)
T ss_pred C---C---CCCCCCHHHHHHHHHHH---------HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHH-HHHHHCEEEC
T ss_conf 7---7---87675124378999999---------99998863214778579999704973289999999-9863217627
Q ss_pred C
Q ss_conf 5
Q gi|254780875|r 252 D 252 (264)
Q Consensus 252 D 252 (264)
-
T Consensus 209 P 209 (232)
T KOG4589 209 P 209 (232)
T ss_pred C
T ss_conf 7
No 234
>KOG3178 consensus
Probab=93.90 E-value=0.055 Score=33.51 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=64.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHH
Q ss_conf 86056642142112331222233321001333222002444201100012222222222222221002333201133321
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIES 177 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~ 177 (264)
....+|+|.|.|.+.=.+.+++|. +.+++.+...+..+..+.. .| |+.+-+|.|... .+=|+|+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~-P~~daI~m------- 242 (342)
T KOG3178 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT-PKGDAIWM------- 242 (342)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCC--CCEEECCHHHHHHHHHHHC-CC----CCEECCCCCCCC-CCCCEEEE-------
T ss_conf 766887587476999999975887--7255147899985223206-78----651236453458-87675998-------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 001221111123575433210112321025689999985378878999
Q gi|254780875|r 178 VIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 178 ~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
+.|+.+= +-+..-+|++.+.+-|+|+|.+++
T Consensus 243 -------kWiLhdw----------tDedcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178 243 -------KWILHDW----------TDEDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred -------EEECCCC----------CHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf -------7000568----------768899999999985899888999
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.88 E-value=0.18 Score=30.14 Aligned_cols=133 Identities=21% Similarity=0.167 Sum_probs=74.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------CC-CH
Q ss_conf 468605664214211233122223-33210013332220024442011000122222222222222---------21-00
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------VE-GL 164 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~~-~~ 164 (264)
.+...|+|||+--|..+-.+++.. +...|+|+|+.|-.. . .+ +.++++|+... +. .+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~---------~--~~-V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------I--PG-VIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC---------C--CC-CEEEEEECCCCCHHHHHHHHCCCCC
T ss_conf 5898799838799849999999738888489997754556---------7--89-4688413248437999998707787
Q ss_pred HHHHHHCC-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH--H
Q ss_conf 23332011-33321001221111123575433210112321025689999985378878999817667999999999--7
Q gi|254780875|r 165 FDVIVSNP-PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFE--S 241 (264)
Q Consensus 165 fD~IvsNP-PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~--~ 241 (264)
+|+|+|.+ | ........ +| +.+ +..-...++.+..+|+++|.++.-. -|++...+++. +
T Consensus 112 ~DvV~sD~ap--~~~g~~~~-----Dh-~r~--------~~L~~~a~~~a~~vL~~~G~fv~K~--fqg~~~~~~l~~~~ 173 (205)
T COG0293 112 VDVVLSDMAP--NTSGNRSV-----DH-ARS--------MYLCELALEFALEVLKPGGSFVAKV--FQGEDFEDLLKALR 173 (205)
T ss_pred CCEEEECCCC--CCCCCCCC-----CH-HHH--------HHHHHHHHHHHHHEECCCCEEEEEE--EECCCHHHHHHHHH
T ss_conf 6668725887--76787220-----08-899--------9999999999987257898399999--75798799999999
Q ss_pred CCCCEEEEEECCCCCCE
Q ss_conf 89805899805689975
Q gi|254780875|r 242 RKLFLVNAFKDYGGNDR 258 (264)
Q Consensus 242 ~gf~~v~~~kD~~g~~R 258 (264)
..|..+++.|=-+-+.+
T Consensus 174 ~~F~~v~~~KP~aSR~~ 190 (205)
T COG0293 174 RLFRKVKIFKPKASRKR 190 (205)
T ss_pred HHHCEEEEECCCCCCCC
T ss_conf 86320677358554677
No 236
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=93.77 E-value=0.19 Score=30.03 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCC---CC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH--
Q ss_conf 124686056642142112331222---23-332100133322200244420110001222222222222222100233--
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLK---ES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDV-- 167 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~---~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~-- 167 (264)
...+|-.|+++|+..|.=++-.|. .. ...+|+++||.-....-...+ ..|+++++||.-+. +.++-
T Consensus 29 ~~~kPd~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~~~i~------~~~I~lieg~s~d~--~~~~~v~ 100 (202)
T pfam04989 29 WELKPDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNRPAIE------APRITFIQGSSTDP--EIIEQVR 100 (202)
T ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHC------CCCEEEEECCCCCH--HHHHHHH
T ss_conf 985999899961676628999999999738998799995764433543531------68769997685678--8998899
Q ss_pred -HHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC------------------
Q ss_conf -3201133321001221111123575433210112321025689999985378878999817------------------
Q gi|254780875|r 168 -IVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG------------------ 228 (264)
Q Consensus 168 -IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig------------------ 228 (264)
++. +| ...+ .-|++-- --+..-+.+..-..++++|.++++|=+
T Consensus 101 ~~~~-~~---~~vl-------------VilDs~H-t~~hVl~eL~~y~~lv~~GsY~IVeDTii~~~p~~~~~~r~w~~g 162 (202)
T pfam04989 101 SLAE-PP---HPVL-------------VILDSDH-THEHVLAELRAYAPLVSEGSYLVVEDTIIEDLPESPFPDRPWGKG 162 (202)
T ss_pred HHHC-CC---CCEE-------------EEECCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCCCCCC
T ss_conf 9853-79---8589-------------9964886-568899999987521576889999576243175566788868789
Q ss_pred CCHHHHHHHHHHHC-CCCEEEEEEC
Q ss_conf 66799999999978-9805899805
Q gi|254780875|r 229 YNQKVDVVRIFESR-KLFLVNAFKD 252 (264)
Q Consensus 229 ~~q~~~v~~ll~~~-gf~~v~~~kD 252 (264)
.+-..++.++|+++ +|..=+.+.|
T Consensus 163 nnP~~Av~eFL~~~~~F~iD~~~~~ 187 (202)
T pfam04989 163 NNPKTAVTEFLAEHPEFEIDTAIED 187 (202)
T ss_pred CCHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 8979999999987899386532022
No 237
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.67 E-value=0.062 Score=33.19 Aligned_cols=97 Identities=26% Similarity=0.322 Sum_probs=54.8
Q ss_pred EEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC---CCC--CHHHHHHHCCHH
Q ss_conf 566421421123312222333-21001333222002444201100012222222222222---221--002333201133
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKESPF-FKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS---SVE--GLFDVIVSNPPY 174 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~~~-~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~---~~~--~~fD~IvsNPPY 174 (264)
++|+|||+|... .++...+. ..++++|+++.++..++......+. ..+.+..++... .+. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred EEEEECCCCHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC-CCEEEEECCCCCCCCCCCCCCEEEEEEECCHH
T ss_conf 588603854689-9999735785799936888999999986300456-63576760421355675666657789861234
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 3210012211111235754332101123210256899999853788789998
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
.+. . ....+....+.++++|.+++.
T Consensus 130 --------------~~~------------~-~~~~~~~~~~~l~~~g~~~~~ 154 (257)
T COG0500 130 --------------HLL------------P-PAKALRELLRVLKPGGRLVLS 154 (257)
T ss_pred --------------HHH------------H-HHHHHHHHHHHCCCCCEEEEE
T ss_conf --------------430------------2-899999999870788689999
No 238
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=93.52 E-value=0.062 Score=33.19 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=72.0
Q ss_pred CCCCC--CCCCCCCCCC-CCCCCCCCCCCCCH-----HHHHHCCCCCCCCCCCCCCCC-C------CCCCCCCHHHHHHH
Q ss_conf 14211--2331222233-32100133322200-----244420110001222222222-2------22222100233320
Q gi|254780875|r 106 TGTGA--VCLALLKESP-FFKGVGVDISCKAL-----EIAKSNAVTNGVSERFDTLQS-D------WFSSVEGLFDVIVS 170 (264)
Q Consensus 106 ~GsG~--i~i~la~~~~-~~~v~~~Dis~~al-----~~A~~N~~~~~~~~~i~~~~~-d------~~~~~~~~fD~Ivs 170 (264)
+|=|- -+++|++.++ ..+++|+-.+.... .-|..|.+.+.-. .+.+.++ | ++..-..+||.||.
T Consensus 3 VGeGdFSFS~aL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~gVDAt~l~~~~~~~~~~fD~IiF 81 (166)
T pfam10354 3 VGEGDFSFSLSLATAFGSPTNLTATSLDSREELEEKYGDAEENLEELEEL-GVTVLHGVDATKLKKHFSLKKNRFDRIIF 81 (166)
T ss_pred EECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 66643289999999629998389974589999987675599999999858-99599857445366684434783578998
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHCCCCEE
Q ss_conf 11333210012211111235754332101123210256899999853788789998176679---999999997898058
Q gi|254780875|r 171 NPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK---VDVVRIFESRKLFLV 247 (264)
Q Consensus 171 NPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~---~~v~~ll~~~gf~~v 247 (264)
|=|=..... ......++.+ . ..++.++..+..+|+++|.+.+-+-..|. =.+..+..+.|+..+
T Consensus 82 NFPH~G~~~-~~~~~~i~~n---r---------~Ll~~Ff~sa~~~l~~~G~i~vTl~~g~py~~W~i~~lA~~~gl~l~ 148 (166)
T pfam10354 82 NFPHAGGKI-KDSDRNIRLN---R---------ELLRGFFKNASELLKPGGEIHVTLKDGEPYNSWNIEALAAEAGLKLE 148 (166)
T ss_pred CCCCCCCCC-CCHHHHHHHH---H---------HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEECHHHHHHHCCCEEE
T ss_conf 799888877-4125558999---9---------99999999999982799899999538999873038899974795898
Q ss_pred EEE
Q ss_conf 998
Q gi|254780875|r 248 NAF 250 (264)
Q Consensus 248 ~~~ 250 (264)
+..
T Consensus 149 ~~~ 151 (166)
T pfam10354 149 ESV 151 (166)
T ss_pred EEE
T ss_conf 875
No 239
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=93.43 E-value=0.028 Score=35.43 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=54.3
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 55531012332110124686056642142112331222233-3210013332220024442011000122222222222
Q gi|254780875|r 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDW 157 (264)
Q Consensus 80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~ 157 (264)
.|++.+++.+ ...+...++|.--|.|--+-+++..++ +.+++|+|.++.|++.|+++...+ .+|+.++++++
T Consensus 7 Vll~Evi~~L----~~~~~g~yvD~T~G~GGHS~~iL~~~~~~~~li~iDrD~~ai~~a~~~l~~~--~~r~~~~~~nF 79 (310)
T pfam01795 7 VLLQEVVELL----NIKPDGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPF--KGRVTLIHSNF 79 (310)
T ss_pred CCHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCC--CCCEEEEECCH
T ss_conf 1199999726----8389999999588971999999984899997999989899999999853025--88589992537
No 240
>KOG1709 consensus
Probab=93.35 E-value=0.091 Score=32.06 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 51223565553101233211012468605664214211233122223332100133322200244420110001222222
Q gi|254780875|r 73 EPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDT 152 (264)
Q Consensus 73 IPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~ 152 (264)
--|.||-++--.+-.. ..+..+||.+|-|-|.|...+-..-|.- -+-++-.++-++--+.+.-.- ..+|..
T Consensus 83 Mm~WEtpiMha~A~ai------~tkggrvLnVGFGMgIidT~iQe~~p~~-H~IiE~hp~V~krmr~~gw~e--k~nVii 153 (271)
T KOG1709 83 MMRWETPIMHALAEAI------STKGGRVLNVGFGMGIIDTFIQEAPPDE-HWIIEAHPDVLKRMRDWGWRE--KENVII 153 (271)
T ss_pred HHHHHHHHHHHHHHHH------HHCCCEEEEECCCHHHHHHHHHHCCCCC-EEEEECCHHHHHHHHHCCCCC--CCCEEE
T ss_conf 5652148999999998------6179648984231677888886359863-178735978999998636654--454688
Q ss_pred CCCCCCCCC----CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 222222222----1002333201133321001221111123575433210112321025689999985378878999817
Q gi|254780875|r 153 LQSDWFSSV----EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG 228 (264)
Q Consensus 153 ~~~d~~~~~----~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig 228 (264)
+.+-|.+-+ ++.||-|.- ++ ..+ .| +.++.+-+.+..+|||+|++-+--|
T Consensus 154 l~g~WeDvl~~L~d~~FDGI~y-----DT-----y~e---~y-------------Edl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709 154 LEGRWEDVLNTLPDKHFDGIYY-----DT-----YSE---LY-------------EDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred EECCHHHHHCCCCCCCCCEEEE-----EC-----HHH---HH-------------HHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 7134676440144567562675-----13-----016---78-------------9999999877640087744888437
Q ss_pred CCH
Q ss_conf 667
Q gi|254780875|r 229 YNQ 231 (264)
Q Consensus 229 ~~q 231 (264)
..-
T Consensus 208 ~~~ 210 (271)
T KOG1709 208 LGA 210 (271)
T ss_pred CCC
T ss_conf 664
No 241
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=93.34 E-value=0.058 Score=33.37 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC-------------
Q ss_conf 0233320113332100122111112357543321011232102568999998537887899981766-------------
Q gi|254780875|r 164 LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN------------- 230 (264)
Q Consensus 164 ~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~------------- 230 (264)
+||+|.| .+|..| +-|.-|++||. +++....+.|+|||.+++|--+=
T Consensus 1 ~fD~i~c--------------lSvtkW---IHLN~GD~Gl~---~~f~~~~~~l~pgg~lilEpQ~w~sY~k~kkl~~~~ 60 (110)
T pfam06859 1 EFDVILC--------------LSVTKW---VHLNWGDEGLK---RFFRRIYRLLRPGGILILEPQPWDSYKKRKKLSETI 60 (110)
T ss_pred CCCEEEE--------------EEEEEE---EECCCCCHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCHHH
T ss_conf 9658999--------------662024---55546428899---999999996188988999678846688773147999
Q ss_pred ---------HHHHHHHHHH--HCCCCEEEEEECCC----CCCEEEE
Q ss_conf ---------7999999999--78980589980568----9975999
Q gi|254780875|r 231 ---------QKVDVVRIFE--SRKLFLVNAFKDYG----GNDRVLL 261 (264)
Q Consensus 231 ---------q~~~v~~ll~--~~gf~~v~~~kD~~----g~~R~vi 261 (264)
..+...++|. +.||..++...-.. |-+|-+.
T Consensus 61 ~~ny~~I~~rPd~F~~yLl~~evGF~s~e~~~~~~~~skGF~Rpi~ 106 (110)
T pfam06859 61 YKNYERIKLKPDQFEEYLLSPEVGFSSYELVGVPNNTSKGFKRPIY 106 (110)
T ss_pred HHHHHHHEECHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEE
T ss_conf 8535542778788899980546680789994378888888777545
No 242
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=93.21 E-value=0.19 Score=29.93 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=85.3
Q ss_pred EEEEECCCCCCCCCCCCCC-----CCCCCCCCCC--CCCCHHHHHHCCCCC-CC-CCCCC-CCCCCCCCCC-CCHHHHHH
Q ss_conf 5664214211233122223-----3321001333--222002444201100-01-22222-2222222222-10023332
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES-----PFFKGVGVDI--SCKALEIAKSNAVTN-GV-SERFD-TLQSDWFSSV-EGLFDVIV 169 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~-----~~~~v~~~Di--s~~al~~A~~N~~~~-~~-~~~i~-~~~~d~~~~~-~~~fD~Iv 169 (264)
+.||+||-|.+-+.+-... +-..|.+.|+ ++.|++.=+.|.... .+ ..-|. +-..|.+... -..||+++
T Consensus 1 ~idLFaGiGG~rlGfe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~~~~~~~~~DI~~i~~~~~~~~~~~Pd~D~L~ 80 (425)
T TIGR00675 1 VIDLFAGIGGIRLGFEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFGNDEKVPFGDITKISPSDLLRHIAIPDFDILL 80 (425)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 94542551357899997410141113788720166877899999976478842067763336601150012488678996
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE------EEECC---CHH-HHHHHHH
Q ss_conf 0113332100122111112357543321011232102568999998537887899------98176---679-9999999
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS------VEIGY---NQK-VDVVRIF 239 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~------lEig~---~q~-~~v~~ll 239 (264)
+=+|=-+-+.--...+ -+.||- -+.-|.-|+ .+++-. +--+|...|+ +.|.. .+. .-+.+-|
T Consensus 81 gGFPCQ~FS~AG~~~~-~~GF~d-----ED~RGtLFF-e~~Ril-K~KkP~~FllENVkgL~~hd~~~~G~Tf~vI~~~L 152 (425)
T TIGR00675 81 GGFPCQPFSIAGKRKG-ELGFED-----EDTRGTLFF-EIVRIL-KEKKPKFFLLENVKGLVSHDKSQRGRTFKVIIETL 152 (425)
T ss_pred CCCCCCHHHHHCCCCC-CCCCCC-----CCCCCCHHH-HHHHHH-HHCCCCEEEEECCCHHCCCCCCCCCCHHHHHHHHH
T ss_conf 3899713446411676-688656-----677775289-989999-85189578844361101788613452789999999
Q ss_pred HHCCCCEE-E-EE--ECCCCC----CEEEE
Q ss_conf 97898058-9-98--056899----75999
Q gi|254780875|r 240 ESRKLFLV-N-AF--KDYGGN----DRVLL 261 (264)
Q Consensus 240 ~~~gf~~v-~-~~--kD~~g~----~R~vi 261 (264)
++.||..- + ++ +|+.+. +|+.|
T Consensus 153 e~lGY~v~~~~VLNa~dFGNvPQ~ReRiyI 182 (425)
T TIGR00675 153 EELGYKVEYKEVLNAKDFGNVPQNRERIYI 182 (425)
T ss_pred HHCCCEEEHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 873887733646616651787665058999
No 243
>KOG2198 consensus
Probab=92.52 E-value=0.28 Score=28.82 Aligned_cols=162 Identities=17% Similarity=0.078 Sum_probs=84.7
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCC----CCCCCCCCCCCCCHHHHHHCCCCCC-----CC-CCCCCCCCC----CC
Q ss_conf 0124686056642142112331222233----3210013332220024442011000-----12-222222222----22
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESP----FFKGVGVDISCKALEIAKSNAVTNG-----VS-ERFDTLQSD----WF 158 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~----~~~v~~~Dis~~al~~A~~N~~~~~-----~~-~~i~~~~~d----~~ 158 (264)
+.-++.-+|||+|.--|.=++.+..... .-.+++=|.++.-+..-..-..... +. +.+.+..+. +-
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCCC
T ss_conf 22679984442013898448999999723777773675345788999999998526984333431211005641014676
Q ss_pred CCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCH-HHHHHHHHHHCCCCCEEEE---EECCCHHH
Q ss_conf 2221002333201133321001221111123575-43321011232102-5689999985378878999---81766799
Q gi|254780875|r 159 SSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDP-RISLDGGIDGLSHY-RTIADGVSRHLNKDGLCSV---EIGYNQKV 233 (264)
Q Consensus 159 ~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP-~~AL~gg~dGl~~~-~~ii~~~~~~L~~~G~l~l---Eig~~q~~ 233 (264)
+.-..+||-|+|.-|- ++| ..+.++..-|-+ ....- ..||... -+|+..+.+.|++||.++. -..+.|-+
T Consensus 231 ~~~~~~fDrVLvDVPC--S~D-gt~rk~~~i~~~~w~~~~--~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE 305 (375)
T KOG2198 231 DKEQLKFDRVLVDVPC--SGD-GTLRKNPNIWKEGWKTQR--ALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE 305 (375)
T ss_pred HHHHHHCCEEEEECCC--CCC-CCCCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf 0334412536871456--898-430228027666555411--35973899999999998725787799942578720027
Q ss_pred H-HHHHHHHCC--CCEEEEEECCCCCCEE
Q ss_conf 9-999999789--8058998056899759
Q gi|254780875|r 234 D-VVRIFESRK--LFLVNAFKDYGGNDRV 259 (264)
Q Consensus 234 ~-v~~ll~~~g--f~~v~~~kD~~g~~R~ 259 (264)
. |..+++..| +..+.+..|+.+.-|.
T Consensus 306 aVV~~~L~~~~~~~~lv~~~~~lp~l~r~ 334 (375)
T KOG2198 306 AVVQEALQKVGGAVELVDVSGDLPGLKRM 334 (375)
T ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCEEC
T ss_conf 99999999836854322303656552514
No 244
>KOG2920 consensus
Probab=92.39 E-value=0.067 Score=32.95 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHCCCCCCC--------CCCCCCCCC---CCCCCCCC
Q ss_conf 4686056642142112331222233321001333222002-44420110001--------222222222---22222210
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALE-IAKSNAVTNGV--------SERFDTLQS---DWFSSVEG 163 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~-~A~~N~~~~~~--------~~~i~~~~~---d~~~~~~~ 163 (264)
....+|||+|||+|.-++.....- ...++..|.|.+.+. +.--|+..+-. ..-....++ ||-....+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ECCCEEEECCCCCCCCCHHHHHHC-CCEEEEEECCHHHEEEECCCCEECCHHHHHHHHHCCCCEECCCCCCCCCHHHHCC
T ss_conf 447556863786456416666403-5323347335112465214653302001023441365212123433220100003
Q ss_pred --HHHHHHH
Q ss_conf --0233320
Q gi|254780875|r 164 --LFDVIVS 170 (264)
Q Consensus 164 --~fD~Ivs 170 (264)
+||+|.+
T Consensus 194 ~~~ydlIls 202 (282)
T KOG2920 194 RTHYDLILS 202 (282)
T ss_pred CCCHHHHHH
T ss_conf 311122110
No 245
>PRK08507 prephenate dehydrogenase; Validated
Probab=92.36 E-value=0.3 Score=28.66 Aligned_cols=39 Identities=18% Similarity=-0.054 Sum_probs=25.6
Q ss_pred CEEEEECCCCCCCCCCCCC----CCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 0566421421123312222----3332100133322200244420
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKE----SPFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~----~~~~~v~~~Dis~~al~~A~~N 140 (264)
+|.=+ |.|-||-|+|+. .+..+|+|+|.++..++.|.+.
T Consensus 2 ~I~Ii--GlGLiGgSla~alk~~~~~~~V~g~d~~~~~~~~A~~~ 44 (275)
T PRK08507 2 KIGII--GLGLMGGSLGLALKENKLISCVYGYDHNEEHEKDALDL 44 (275)
T ss_pred EEEEE--ECCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHC
T ss_conf 89999--00878999999999509986799995999999999986
No 246
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=92.31 E-value=0.2 Score=29.81 Aligned_cols=76 Identities=21% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHC--
Q ss_conf 233320113332100122111112357543321011232102568999998537887899981766799999999978--
Q gi|254780875|r 165 FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESR-- 242 (264)
Q Consensus 165 fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~-- 242 (264)
.|+|++-|||=...+...-..+ ...++=+.+++.++.++.+.|+++|.+++-++......+..++.+.
T Consensus 1 IDli~tdPPY~~~~~~~~~~~~----------~~~~~y~~~~~~~~~~~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~ 70 (221)
T pfam01555 1 VDLIVTDPPYNLGKDYGQWDDK----------DSYEEYLEWLEEWLKEVRRVLKPGGSIFINIGDKYIKSLKALALEILG 70 (221)
T ss_pred CEEEEECCCCCCCCCCCCCCCC----------CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 9199989999777756626788----------899999999999999999982688659997671757999999999745
Q ss_pred CCCEEEEE
Q ss_conf 98058998
Q gi|254780875|r 243 KLFLVNAF 250 (264)
Q Consensus 243 gf~~v~~~ 250 (264)
+|.....+
T Consensus 71 ~~~~~~~i 78 (221)
T pfam01555 71 IFKLLNDI 78 (221)
T ss_pred CCCCCCEE
T ss_conf 34223369
No 247
>KOG1331 consensus
Probab=92.08 E-value=0.17 Score=30.30 Aligned_cols=113 Identities=24% Similarity=0.297 Sum_probs=65.3
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 04620512235655531012332110124686056642142112331222233321001333222002444201100012
Q gi|254780875|r 68 SSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVS 147 (264)
Q Consensus 68 ~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~ 147 (264)
+...+-|=|.+...++. ......++|.|||.|-- ..-.|...++|+|++..-+..|++--.
T Consensus 26 s~tr~~~Wp~v~qfl~~----------~~~gsv~~d~gCGngky----~~~~p~~~~ig~D~c~~l~~~ak~~~~----- 86 (293)
T KOG1331 26 SATRAAPWPMVRQFLDS----------QPTGSVGLDVGCGNGKY----LGVNPLCLIIGCDLCTGLLGGAKRSGG----- 86 (293)
T ss_pred CCCCCCCCHHHHHHHHC----------CCCCCEEEECCCCCCCC----CCCCCCCEEEECCHHHHHCCCCCCCCC-----
T ss_conf 65444761789999850----------68764045424687655----767986315403022322053334798-----
Q ss_pred CCCCCCCCCCCCCC--CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 22222222222222--100233320113332100122111112357543321011232102568999998537887899
Q gi|254780875|r 148 ERFDTLQSDWFSSV--EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS 224 (264)
Q Consensus 148 ~~i~~~~~d~~~~~--~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~ 224 (264)
+ ....+|.+... +..||..+| .+..+.+...-++ +++++...+.|+|+|...
T Consensus 87 ~--~~~~ad~l~~p~~~~s~d~~ls------iavihhlsT~~RR-----------------~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331 87 D--NVCRADALKLPFREESFDAALS------IAVIHHLSTRERR-----------------ERALEELLRVLRPGGNAL 140 (293)
T ss_pred C--EEEHHHHHCCCCCCCCCCCCHH------HHHHHHHHHHHHH-----------------HHHHHHHHHHHCCCCCEE
T ss_conf 6--2561244428987876000323------3544444367789-----------------999999998726788568
No 248
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=91.66 E-value=0.058 Score=33.34 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=50.1
Q ss_pred CEEEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHCCCCCCCCCC-CCCCCCCC
Q ss_conf 0566421421123312222333--2100133322200244420110001222-22222222
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKESPF--FKGVGVDISCKALEIAKSNAVTNGVSER-FDTLQSDW 157 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~~~--~~v~~~Dis~~al~~A~~N~~~~~~~~~-i~~~~~d~ 157 (264)
.++|+|+..|-.++.+++..+. ++|++++=.|.+.+..++|...|++.+. +.+++.-+
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~~~~v~afEP~p~~~~~l~~n~~~n~~~~~~~~~~~~A~ 61 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEGGGRVIAFEPLPDAYEILEENVKLNGLPNKEVKLLNAAV 61 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEEEE
T ss_conf 9787017704799999974178873189986895799999986203787873289973000
No 249
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=91.56 E-value=0.085 Score=32.28 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=70.9
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHCC-----------CCCCCCCCCCCCCCCCCCCC
Q ss_conf 1246860566421421123312222333210013332220024-44201-----------10001222222222222222
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEI-AKSNA-----------VTNGVSERFDTLQSDWFSSV 161 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~-A~~N~-----------~~~~~~~~i~~~~~d~~~~~ 161 (264)
...++.+|+=-.||-..=..-+|. .+.+|+|+|+|+.|++- -.+|- ..+. .+.+++++||+|+..
T Consensus 40 ~~~~~~rVfVPLCGKSlDm~WLa~--qG~~VvGvELse~Av~~FF~E~~l~~~v~~~~~~~~y~-~~~I~i~~GD~F~L~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHH--CCCEEEEEEHHHHHHHHHHHHCCCCCEEECCCCCEEEE-CCCEEEEECCCCCCC
T ss_conf 889998699967887898999997--89825643101899999999769984551378812885-188769963621586
Q ss_pred C-----CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EECCCH----
Q ss_conf 1-----002333201133321001221111123575433210112321025689999985378878999-817667----
Q gi|254780875|r 162 E-----GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-EIGYNQ---- 231 (264)
Q Consensus 162 ~-----~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-Eig~~q---- 231 (264)
. +.||.| .+...+-.++++.+ .+.++....+|++++.+++ -..++|
T Consensus 117 ~~~~~lg~~dai------YDRAALVALP~~mR------------------~~Ya~~L~~ll~~~~~~LLitl~Y~q~~~g 172 (226)
T PRK13256 117 KIANNLPVFDIW------YDRGAYIALPNDLR------------------TNYAKMMLEVCSNNTQILLLVMEHDKKSQT 172 (226)
T ss_pred CHHCCCCCCCEE------EEEHHHHCCCHHHH------------------HHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 201157640369------74022531998999------------------999999998658777099999864754579
Q ss_pred ------HHHHHHHHHHC
Q ss_conf ------99999999978
Q gi|254780875|r 232 ------KVDVVRIFESR 242 (264)
Q Consensus 232 ------~~~v~~ll~~~ 242 (264)
.++|.+++...
T Consensus 173 PPFsV~~~EV~~lf~~~ 189 (226)
T PRK13256 173 PPYSVTQAELIKNFSAK 189 (226)
T ss_pred CCCCCCHHHHHHHHCCC
T ss_conf 49979999999984898
No 250
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.46 E-value=0.031 Score=35.16 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=73.2
Q ss_pred HCCCCHHHHCCCEEEEE-EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC----C-
Q ss_conf 74983768536314423-76775046205122356555310123321101246860566421421123312222----3-
Q gi|254780875|r 46 LKHESIHRILGWRDFYN-VRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKE----S- 119 (264)
Q Consensus 46 ~~g~Pl~YIlg~~~F~~-~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~----~- 119 (264)
+..-+..|-.+...|.. -+|...| -+-+-=-|++..+.+.... ......+..++++|.|+|.++--+++. .
T Consensus 28 L~~p~~GYYs~~~~~G~~GDFiTAp--els~lFGella~~~~~~wq-~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P 104 (370)
T COG1565 28 LYDPEHGYYSSAVKIGRKGDFITAP--ELSQLFGELLAEQFLQLWQ-ELGRPAPLKLVEIGAGRGTLASDILRTLRRLYP 104 (370)
T ss_pred HCCCCCCCCCCCHHCCCCCCEEECH--HHHHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCH
T ss_conf 7188876502301124458745244--2688999999999999999-836899844899679967699999999987597
Q ss_pred ---CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHC
Q ss_conf ---3321001333222002444201100012222222222222221002-333201
Q gi|254780875|r 120 ---PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLF-DVIVSN 171 (264)
Q Consensus 120 ---~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~f-D~IvsN 171 (264)
..+++.-++.|+.-.+.-+++.+... +. +....|.+.+++.+ -++|||
T Consensus 105 ~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~--~~--~~~~~~~e~~p~~~~~i~~~N 156 (370)
T COG1565 105 ELYEALSYYIIEPSPELRARQKETLKATE--DL--IRWVEWVEDLPKKFPGIVVSN 156 (370)
T ss_pred HHHHHCEEEEEECCHHHHHHHHHHHHCCC--CC--HHHHHHHHHCCCCCCEEEEEC
T ss_conf 87730559999259899999999874332--11--166766875446675699851
No 251
>KOG1227 consensus
Probab=91.30 E-value=0.038 Score=34.55 Aligned_cols=72 Identities=22% Similarity=0.154 Sum_probs=54.4
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCHHHHH
Q ss_conf 6860566421421123312222333210013332220024442011000122222222222222-21002333
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-VEGLFDVI 168 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-~~~~fD~I 168 (264)
..-.|.|+-.|-|-..+...-......|+|+|.+|.+++--+.|++.|++.+|....++|--.. ....-|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrV 266 (351)
T KOG1227 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRV 266 (351)
T ss_pred CCCHHHHHHCCCCEEEEEHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHE
T ss_conf 6530122342654487402300574579999458799999998777411578878665102366755320203
No 252
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.21 E-value=0.84 Score=25.71 Aligned_cols=138 Identities=23% Similarity=0.249 Sum_probs=69.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 235655531012332110124686056642142112331222233321-0013332220024442011000122222222
Q gi|254780875|r 76 PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFK-GVGVDISCKALEIAKSNAVTNGVSERFDTLQ 154 (264)
Q Consensus 76 peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~-v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~ 154 (264)
|-|=--|-++|..+......-.+.++||+|.|-|.-..++..-+|..+ ++-++.|+.-=++... +..++..-.
T Consensus 92 p~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t------l~~nv~t~~ 165 (484)
T COG5459 92 PQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT------LAENVSTEK 165 (484)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH------HHHHCCCCC
T ss_conf 57899999999999974888686102003778752123320337880221234048999999999------986045334
Q ss_pred CCCCCC--------C--CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCEE
Q ss_conf 222222--------2--10023332011333210012211111235754332101123210-256899999853788789
Q gi|254780875|r 155 SDWFSS--------V--EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSH-YRTIADGVSRHLNKDGLC 223 (264)
Q Consensus 155 ~d~~~~--------~--~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~-~~~ii~~~~~~L~~~G~l 223 (264)
.||-.. + ...|++++. .++ +-+ ||.+. +...++...+++.|||.+
T Consensus 166 td~r~s~vt~dRl~lp~ad~ytl~i~------~~e---Ll~---------------d~~ek~i~~~ie~lw~l~~~gg~l 221 (484)
T COG5459 166 TDWRASDVTEDRLSLPAADLYTLAIV------LDE---LLP---------------DGNEKPIQVNIERLWNLLAPGGHL 221 (484)
T ss_pred CCCCCCCCCHHCCCCCCCCEEEHHHH------HHH---HCC---------------CCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 77778865021047883223633343------544---443---------------557431889999999860689749
Q ss_pred E-EEECCCHH----HHHHHHHHHCC
Q ss_conf 9-98176679----99999999789
Q gi|254780875|r 224 S-VEIGYNQK----VDVVRIFESRK 243 (264)
Q Consensus 224 ~-lEig~~q~----~~v~~ll~~~g 243 (264)
+ +|-|...+ ....+++-..|
T Consensus 222 VivErGtp~Gf~~I~rAR~~ll~~~ 246 (484)
T COG5459 222 VIVERGTPAGFERILRARQILLAPG 246 (484)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 9971798236999999999984577
No 253
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.77 E-value=0.22 Score=29.60 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=34.9
Q ss_pred CCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 124686056642142-112331222233321001333222002444201
Q gi|254780875|r 94 EKRDVVRILDLGTGT-GAVCLALLKESPFFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 94 ~~~~~~~vLDlG~Gs-G~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~ 141 (264)
.....-+++=+|+|. |.+++.+|+.....+|+++|.+++.++.|++.-
T Consensus 166 ~~~~g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~~G 214 (343)
T PRK09880 166 GDLQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLARQMG 214 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC
T ss_conf 7756988999847767999999999869987999979789999999729
No 254
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=89.73 E-value=0.091 Score=32.09 Aligned_cols=34 Identities=26% Similarity=0.586 Sum_probs=24.6
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 468605664214211233122223332100133322
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISC 131 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~ 131 (264)
.++.++.|+|||.|.+.-.|.++ +..+.|+|.-.
T Consensus 57 ~~~~~FvDlGCGNGlLV~IL~~E--Gy~G~GiD~R~ 90 (112)
T pfam07757 57 ESLQSFVDIGCGNGLLVYILASE--GYRGYGIDLRK 90 (112)
T ss_pred CCCCCEEEECCCCHHHHHHHHHC--CCCCCCCCCCC
T ss_conf 57885377147722899989867--88773314100
No 255
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.53 E-value=0.23 Score=29.39 Aligned_cols=48 Identities=21% Similarity=0.087 Sum_probs=34.5
Q ss_pred CCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 01246860566421421-1233122223332100133322200244420
Q gi|254780875|r 93 IEKRDVVRILDLGTGTG-AVCLALLKESPFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG-~i~i~la~~~~~~~v~~~Dis~~al~~A~~N 140 (264)
..-+..-+||=+|+|.. .+++.+|+.....+|+++|.++.-++.|++.
T Consensus 172 ~~~~~g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~l 220 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF 220 (358)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
T ss_conf 0799998899967376999999999983991899991988999999965
No 256
>COG4889 Predicted helicase [General function prediction only]
Probab=88.32 E-value=0.14 Score=30.90 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=69.6
Q ss_pred HHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC----------CCCCCCCCCCCCCCCCHHHHHHCCCC--CCCCCCC
Q ss_conf 31012332110124686056642142112331222----------23332100133322200244420110--0012222
Q gi|254780875|r 83 DSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLK----------ESPFFKGVGVDISCKALEIAKSNAVT--NGVSERF 150 (264)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~----------~~~~~~v~~~Dis~~al~~A~~N~~~--~~~~~~i 150 (264)
+-+++..+-+.-..+...|||-.||+|....-+.+ .+.+ ..+|.||---+.=+|-.|++. ++++.-.
T Consensus 831 d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~-eLhA~eIvLLsYYIAaiNIe~t~~~~~gd~ 909 (1518)
T COG4889 831 DDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQK-ELHAFEIVLLSYYIAAINIEQTAQNRDGDL 909 (1518)
T ss_pred CHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 1388987188866577066347787407899999986588999999985-530778799999999862798765414871
Q ss_pred CC----CCCCCCCCCC---------------------CHHHHHHHCCHHHHHHCCCC-CCCCCCCCCC------------
Q ss_conf 22----2222222221---------------------00233320113332100122-1111123575------------
Q gi|254780875|r 151 DT----LQSDWFSSVE---------------------GLFDVIVSNPPYIESVIVDC-LGLEVRDFDP------------ 192 (264)
Q Consensus 151 ~~----~~~d~~~~~~---------------------~~fD~IvsNPPYI~~~~~~~-l~~~v~~~EP------------ 192 (264)
.- ..+|-|+..+ -+.-+|+.||||-....-.+ ....+ .|+-
T Consensus 910 ~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl-~ypkLd~rv~~sy~k~ 988 (1518)
T COG4889 910 KNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNL-SYPKLDKRVYESYGKN 988 (1518)
T ss_pred CCCCCCEECCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCC
T ss_conf 137871540235442235455654575378998613785499917998765656767655455-6622788999987202
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 43321011232102568999998537887899981
Q gi|254780875|r 193 RISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI 227 (264)
Q Consensus 193 ~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi 227 (264)
+.|- ....=.+-|-+-++.+...++.+|++-|..
T Consensus 989 STA~-nknsl~Dsyira~RwasDri~d~GVigFV~ 1022 (1518)
T COG4889 989 STAT-NKNSLRDSYIRAIRWASDRIKDNGVIGFVV 1022 (1518)
T ss_pred CHHH-CCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 2120-234258999999998765315685599995
No 257
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=86.96 E-value=0.27 Score=28.95 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=53.7
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 555310123321101246860566421421123312222333-210013332220024442011000122222222222
Q gi|254780875|r 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPF-FKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDW 157 (264)
Q Consensus 80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~-~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~ 157 (264)
.|.+.+++.+ ..++....+|.--|-|.-+-.+...++. ..++|+|.++.|++.|++....++ .|+.++++++
T Consensus 10 VLl~E~i~~L----~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F 82 (314)
T COG0275 10 VLLNEVVELL----APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF 82 (314)
T ss_pred HHHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC--CCEEEEECCH
T ss_conf 1799999852----64899479982377747689999858988708997689899999999853037--8489995768
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.48 E-value=2.8 Score=22.26 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=78.4
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 553101233211012468605664214211233122223332100133322200----2444201100012222222222
Q gi|254780875|r 81 LVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKAL----EIAKSNAVTNGVSERFDTLQSD 156 (264)
Q Consensus 81 lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al----~~A~~N~~~~~~~~~i~~~~~d 156 (264)
|.-.++.- +....-+...+||=||.-||--.--++.-.+.-.++|++.|+... .+|++ + .|+--+.+|
T Consensus 61 LaAaIl~G-l~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R----~Ni~PIL~D 132 (231)
T COG1889 61 LAAAILKG-LKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---R----PNIIPILED 132 (231)
T ss_pred HHHHHHCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHH---C----CCCEEEECC
T ss_conf 79999737-002776999878995036798576777604787089999644469999999874---7----874002013
Q ss_pred CCCC-----CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC--
Q ss_conf 2222-----210023332011333210012211111235754332101123210256899999853788789998176--
Q gi|254780875|r 157 WFSS-----VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY-- 229 (264)
Q Consensus 157 ~~~~-----~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~-- 229 (264)
.-.+ +-+..|+|.+ +|.+ |..| +-++.++..+|+++|.+++-+-.
T Consensus 133 A~~P~~Y~~~Ve~VDviy~---------------DVAQ--p~Qa-----------~I~~~Na~~FLk~~G~~~i~iKArS 184 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQ---------------DVAQ--PNQA-----------EILADNAEFFLKKGGYVVIAIKARS 184 (231)
T ss_pred CCCCHHHHHHCCCCCEEEE---------------ECCC--CHHH-----------HHHHHHHHHHCCCCCEEEEEEEEEC
T ss_conf 6883776531245438998---------------3688--1078-----------9999889973216973999998512
Q ss_pred ---C----H-HHHHHHHHHHCCCCEEEEE-ECCCCCCEEEE
Q ss_conf ---6----7-9999999997898058998-05689975999
Q gi|254780875|r 230 ---N----Q-KVDVVRIFESRKLFLVNAF-KDYGGNDRVLL 261 (264)
Q Consensus 230 ---~----q-~~~v~~ll~~~gf~~v~~~-kD~~g~~R~vi 261 (264)
. + ..+-.+.|++.+|...+.. -+-...+-+.+
T Consensus 185 IdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~DH~~i 225 (231)
T COG1889 185 IDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALI 225 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEE
T ss_conf 30458989999999999985695046776367766642899
No 259
>KOG3350 consensus
Probab=86.27 E-value=0.72 Score=26.14 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=73.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHH----HCCCCHHHHCCCE--EEEEEEEEEECCCCCHHHHH-HHHHHHHCCCCCCCCCCCC
Q ss_conf 448858989999999999989----7498376853631--44237677504620512235-6555310123321101246
Q gi|254780875|r 25 DPDSVLDDRQRFFLTNAIVRS----LKHESIHRILGWR--DFYNVRLTLSSDTFEPRPET-ELLVDSALAFSLPRIEKRD 97 (264)
Q Consensus 25 ~~~~~l~~~~~~~l~~~i~rr----~~g~Pl~YIlg~~--~F~~~~f~v~~~vLIPRpeT-E~lv~~~l~~~~~~~~~~~ 97 (264)
+-+-.+|......+.+....+ ...++..|+++.. +|.--.|.-. +|| +.|++.+++.. ..
T Consensus 7 Dd~~~LsA~aLAaL~eF~aEq~k~~e~~~~~~~~i~~~~eDwQlsqfwy~-------~eta~~La~e~v~~s------~e 73 (217)
T KOG3350 7 DDDLQLSADALAALNEFLAEQQKRIEEEENQSDIIEKIGEDWQLSQFWYS-------DETARKLAAERVEAS------GE 73 (217)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCC-------HHHHHHHHHHHHHHC------CC
T ss_conf 76654678899999999999875540167634466530203303655137-------779999999998523------56
Q ss_pred CCCEEEEECCCCCCCCCCCCC-----CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC------CCCCCCCCHHH
Q ss_conf 860566421421123312222-----3332100133322200244420110001222222222------22222210023
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKE-----SPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS------DWFSSVEGLFD 166 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~-----~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~------d~~~~~~~~fD 166 (264)
+.+|.=+-|-| +.+-++ .|+.+|+-.+.++. .+.+| -+|+.- |+-+.+.++||
T Consensus 74 ~~rIacvS~Ps----ly~y~k~re~~~~~~~v~lfEfDkR--------Fe~yg----~eFvfYDyN~p~dlp~~lk~~fd 137 (217)
T KOG3350 74 GSRIACVSCPS----LYVYQKKREIEIPHDQVYLFEFDKR--------FELYG----TEFVFYDYNCPLDLPDELKAHFD 137 (217)
T ss_pred CCEEEEEECCH----HHHHHHHHHCCCCCEEEEEEEEHHH--------HHHCC----CEEEEECCCCCCCCHHHHHHCCC
T ss_conf 85699971760----7765521311677506999872246--------77504----52578506897777799974016
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 3320113332100122111112357543321011232102568999998537887899981766799999999
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIF 239 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll 239 (264)
+||+.|||.... ++.+-...+..+.+++-++++.-|.--.+-+.+++
T Consensus 138 iivaDPPfL~~e--------------------------Cl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l 184 (217)
T KOG3350 138 IIVADPPFLSEE--------------------------CLAKTSETIKRLQRNQKKVILCTGEIMEEWASALL 184 (217)
T ss_pred EEEECCCCCCCH--------------------------HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH
T ss_conf 897178654616--------------------------66666899999706885399834067689999875
No 260
>KOG2352 consensus
Probab=86.18 E-value=0.71 Score=26.19 Aligned_cols=107 Identities=22% Similarity=0.307 Sum_probs=59.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHCCHHHH
Q ss_conf 6056642142112331222233321001333222002444201100012222222222222--22100233320113332
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS--SVEGLFDVIVSNPPYIE 176 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~--~~~~~fD~IvsNPPYI~ 176 (264)
.+++-+|||.--+..-+-+. -.-.++.+|+|+.+++....--.+..-. +.+...|... +-++.||+++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~--~~~~~~d~~~l~fedESFdiVId------ 120 (482)
T KOG2352 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPE--MQMVEMDMDQLVFEDESFDIVID------ 120 (482)
T ss_pred CEEEEECCCCCHHHHHHHHC-CCCCCEECCCCHHHHHHHHHCCCCCCCC--EEEEEECCHHCCCCCCCEEEEEE------
T ss_conf 11476158877999999865-8777422005689999987514567742--48898021103578753148873------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 100122111112357543321011232102568999998537887899
Q gi|254780875|r 177 SVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS 224 (264)
Q Consensus 177 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~ 224 (264)
.+..+.+ +++..|+.-- ...........+.|+++|..+
T Consensus 121 kGtlDal------~~de~a~~~~----~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352 121 KGTLDAL------FEDEDALLNT----AHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred CCCCCCC------CCCCHHHHHH----HHHHHHHHHHHHHHCCCCEEE
T ss_conf 2764001------4785002346----776677766788742698789
No 261
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.80 E-value=0.52 Score=27.09 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=27.2
Q ss_pred CEEEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 05664214--2112331222233321001333222002444201
Q gi|254780875|r 100 RILDLGTG--TGAVCLALLKESPFFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 100 ~vLDlG~G--sG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~ 141 (264)
+|+=+|+| -|.|+.++.+..+..+|+|+|.++++++.|++.-
T Consensus 8 ~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g 51 (307)
T PRK07502 8 RVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRARARELG 51 (307)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCC
T ss_conf 68999278799999999985499857999849999999999869
No 262
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.50 E-value=1.5 Score=24.04 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=4.8
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 68999998537887
Q gi|254780875|r 208 TIADGVSRHLNKDG 221 (264)
Q Consensus 208 ~ii~~~~~~L~~~G 221 (264)
..++...++|+++-
T Consensus 100 ~a~~~I~~~l~~~~ 113 (415)
T PRK11064 100 AAAKSIAPVLKKGD 113 (415)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 89999997526886
No 263
>KOG1201 consensus
Probab=85.00 E-value=0.28 Score=28.83 Aligned_cols=78 Identities=22% Similarity=0.125 Sum_probs=52.2
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------
Q ss_conf 1012468605664214211233122223--33210013332220024442011000122222222222222---------
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--------- 160 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--------- 160 (264)
....-.+..||=-|.||| ++=.+|.++ -++++.-+|++++...-+.+...++| ++..+..|+-+.
T Consensus 32 ~~k~v~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201 32 PLKSVSGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred CHHHCCCCEEEEECCCCH-HHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCC---CEEEEEECCCCHHHHHHHHHH
T ss_conf 334406988999689860-7899999999707848999556512399999998448---525899558988999999999
Q ss_pred C---CCHHHHHHHCCH
Q ss_conf 2---100233320113
Q gi|254780875|r 161 V---EGLFDVIVSNPP 173 (264)
Q Consensus 161 ~---~~~fD~IvsNPP 173 (264)
+ -|..|++|.|-=
T Consensus 108 Vk~e~G~V~ILVNNAG 123 (300)
T KOG1201 108 VKKEVGDVDILVNNAG 123 (300)
T ss_pred HHHHCCCCEEEEECCC
T ss_conf 9986199549983664
No 264
>PRK05876 short chain dehydrogenase; Provisional
Probab=84.18 E-value=0.24 Score=29.31 Aligned_cols=85 Identities=19% Similarity=0.074 Sum_probs=49.8
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
+..++=-|.+|| |+.++|+.+ .+++|+.+|++.++++-+.+.....+.. +..+..|+-+. . -+
T Consensus 6 gKvavITGaasG-IG~a~A~~la~~Ga~Vvi~d~~~~~l~~~~~~l~~~g~~--~~~~~~Dvt~~~~v~~l~~~~~~~~G 82 (275)
T PRK05876 6 GRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFD--VHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 987999282669-999999999987998999979889999999999826984--79997888999999999999999848
Q ss_pred HHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 0233320113332100122111
Q gi|254780875|r 164 LFDVIVSNPPYIESVIVDCLGL 185 (264)
Q Consensus 164 ~fD~IvsNPPYI~~~~~~~l~~ 185 (264)
+.|++++|-=......+..++.
T Consensus 83 ~iDilvnNAGi~~~~~~~~~~~ 104 (275)
T PRK05876 83 HVDVVFSNAGIVVGGPIVEMTH 104 (275)
T ss_pred CCCEEECCCCCCCCCCCCCCCH
T ss_conf 9885121574468987232999
No 265
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=83.91 E-value=1.4 Score=24.28 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=15.1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 8605664214211233122223332100133322200244420
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N 140 (264)
...|||.-+|||-.+++ ...-+-..+|+|+++.-++++.+-
T Consensus 223 ~diVlDpf~GsGtt~~a--a~~~~r~~ig~e~~~~y~~~~~~r 263 (302)
T COG0863 223 GDIVLDPFAGSGTTGIA--AKNLGRRFIGIEINPEYVEVALKR 263 (302)
T ss_pred CCEEEECCCCCCCHHHH--HHHHCCCEECCCCCHHHHHHHHHH
T ss_conf 77887417688719999--998114134352348899999999
No 266
>PRK09422 alcohol dehydrogenase; Provisional
Probab=83.71 E-value=0.54 Score=26.99 Aligned_cols=79 Identities=20% Similarity=0.157 Sum_probs=46.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC------C-C-CCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3767750462051223565553101------2-3-3211012468605664214-2112331222233321001333222
Q gi|254780875|r 62 NVRLTLSSDTFEPRPETELLVDSAL------A-F-SLPRIEKRDVVRILDLGTG-TGAVCLALLKESPFFKGVGVDISCK 132 (264)
Q Consensus 62 ~~~f~v~~~vLIPRpeTE~lv~~~l------~-~-~~~~~~~~~~~~vLDlG~G-sG~i~i~la~~~~~~~v~~~Dis~~ 132 (264)
..-..|+..-++|-||+=-..+.+. . + ......-++.-+||=.|+| .|.+++.+|+...+++|+++|.|++
T Consensus 119 AEy~~v~~~~~~~iP~~l~~~~AA~l~~~~~t~~~al~~~~~~~G~~VlV~GaGgvG~~aiq~ak~~~g~~Vi~~~~~~~ 198 (338)
T PRK09422 119 AEQCIVTADYAVKVPEGLDPAAASSITCAGVTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDD 198 (338)
T ss_pred EEEEECCHHHEEECCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 44411253529987899988897523304676889999848999988999688689999999999808986999989999
Q ss_pred CHHHHHHC
Q ss_conf 00244420
Q gi|254780875|r 133 ALEIAKSN 140 (264)
Q Consensus 133 al~~A~~N 140 (264)
-++.|++.
T Consensus 199 k~~~a~~l 206 (338)
T PRK09422 199 KLALAKEV 206 (338)
T ss_pred HHHHHHHC
T ss_conf 99999972
No 267
>PRK04148 hypothetical protein; Provisional
Probab=83.69 E-value=0.27 Score=28.98 Aligned_cols=66 Identities=27% Similarity=0.265 Sum_probs=43.7
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHH
Q ss_conf 12468605664214211233122223--332100133322200244420110001222222222222222---1002333
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV---EGLFDVI 168 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~I 168 (264)
...++.+|.++|-|-=- ..|... -+..|+++|+++.|+.-|+. .| +.++.-|+|++- -...|+|
T Consensus 13 ~~~~~~kIvEvGIGf~~---~vA~~L~e~g~dv~~~Din~~aV~~a~~----~G----l~~v~DDif~P~l~iY~~a~lI 81 (135)
T PRK04148 13 PHLKNGKIAELGIGFYF---KVAKKLKESGFDVIVIDINKKAVEKAKK----LG----LNAFVDDIFNPNLEIYKNAKLI 81 (135)
T ss_pred CCCCCCEEEEEECCCCH---HHHHHHHHCCCCEEEEECCHHHHHHHHH----CC----CCEEECCCCCCCHHHHCCCCEE
T ss_conf 21128738999236667---8999998749988999576554322123----28----7637515889988885178879
Q ss_pred HH
Q ss_conf 20
Q gi|254780875|r 169 VS 170 (264)
Q Consensus 169 vs 170 (264)
-|
T Consensus 82 YS 83 (135)
T PRK04148 82 YS 83 (135)
T ss_pred EE
T ss_conf 98
No 268
>PRK05650 short chain dehydrogenase; Provisional
Probab=83.57 E-value=0.19 Score=30.02 Aligned_cols=71 Identities=20% Similarity=0.083 Sum_probs=36.0
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222---------2---1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~f 165 (264)
|||=-|.+|| |+.++|.++ .+++|..+|++++.++-..+-....+.+ +.++..|+-+. . -+..
T Consensus 2 rVlITGassG-IG~alA~~la~~G~~V~l~~r~~~~l~~~~~~l~~~g~~--~~~~~~Dvt~~~~~~~~~~~v~~~~g~i 78 (270)
T PRK05650 2 RVMITGAASG-LGRAIALRWAREGWRLALADVNEEGGEETLKELREAGGD--GFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 7999887649-999999999988998999979889999999999844992--8999845899999999999999983997
Q ss_pred HHHHHCCH
Q ss_conf 33320113
Q gi|254780875|r 166 DVIVSNPP 173 (264)
Q Consensus 166 D~IvsNPP 173 (264)
|++|.|-=
T Consensus 79 DiLVNNAG 86 (270)
T PRK05650 79 DVIVNNAG 86 (270)
T ss_pred CEEEECCC
T ss_conf 78962476
No 269
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=83.46 E-value=0.39 Score=27.94 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=63.1
Q ss_pred CCCCCCEEEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----CHHHHH
Q ss_conf 2468605664214--2112331222233321001333222002444201100012222222222222221----002333
Q gi|254780875|r 95 KRDVVRILDLGTG--TGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE----GLFDVI 168 (264)
Q Consensus 95 ~~~~~~vLDlG~G--sG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~----~~fD~I 168 (264)
.....++|=+|.+ .|.|.|-||+...+.+|+|+==-|++-++++++=..+=+++ ..++-..++ +..++|
T Consensus 148 ~~~~~~lLIiGgAGGVGSI~iQLAR~LT~ltVIaTASRpEs~~Wv~~LGAH~VIDH-----skPL~~ql~~L~l~~v~~V 222 (338)
T TIGR02817 148 AGAKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDH-----SKPLKAQLEKLGLEAVSYV 222 (338)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEECC-----CCCHHHHHHHHCCCCCCEE
T ss_conf 88887478973885178999999998549649997285789999997399188658-----8436899998288998557
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 2011333210012211111235754332101123210256899999853788789998176679999
Q gi|254780875|r 169 VSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDV 235 (264)
Q Consensus 169 vsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v 235 (264)
+| . ... .+-++++-++|+|.|+|.+ |+.-+.-++
T Consensus 223 ~S------l---T~T-----------------------DqH~~~ive~laPQGrlaL-IDDP~~LD~ 256 (338)
T TIGR02817 223 FS------L---THT-----------------------DQHFKEIVELLAPQGRLAL-IDDPAELDV 256 (338)
T ss_pred EC------C---CHH-----------------------HHHHHHHHHHHCCCCCEEC-CCCCCCCCH
T ss_conf 51------6---607-----------------------8999999998567874000-028700163
No 270
>pfam02636 DUF185 Uncharacterized ACR, COG1565. This family contains several uncharacterized proteins. One member has been described as an ATP synthase beta subunit transcription termination factor rho protein.
Probab=83.15 E-value=0.21 Score=29.68 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=35.7
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCC----C----CCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 2468605664214211233122223----3----321001333222002444201100
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKES----P----FFKGVGVDISCKALEIAKSNAVTN 144 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~----~----~~~v~~~Dis~~al~~A~~N~~~~ 144 (264)
...+.+|+|+|.|+|.++..+...+ | ..+++.+|+|+...+.-+++....
T Consensus 15 ~p~~~~ivE~G~G~G~L~~dil~~l~~~~p~~~~~~~y~lvE~s~~L~~~Q~~~L~~~ 72 (240)
T pfam02636 15 SPPPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPALRERQKERLAGS 72 (240)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 8997089997997189999999999875946575346999808999999999975214
No 271
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=82.53 E-value=0.62 Score=26.57 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=30.2
Q ss_pred CCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 86056642142-11233122223332100133322200244420
Q gi|254780875|r 98 VVRILDLGTGT-GAVCLALLKESPFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 98 ~~~vLDlG~Gs-G~i~i~la~~~~~~~v~~~Dis~~al~~A~~N 140 (264)
.-+||=+|+|. |.+++.+|+.....+|+++|.++.-++.|++-
T Consensus 164 g~~VlV~GaG~vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~l 207 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM 207 (341)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHC
T ss_conf 88699989975432999999984992899994899999989864
No 272
>PRK06914 short chain dehydrogenase; Provisional
Probab=82.49 E-value=0.24 Score=29.34 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=8.0
Q ss_pred CCCCCEEEEECCCCCCC
Q ss_conf 46860566421421123
Q gi|254780875|r 96 RDVVRILDLGTGTGAVC 112 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~ 112 (264)
....+|+-+++-+|.++
T Consensus 130 ~~~G~IvnisS~~g~~~ 146 (280)
T PRK06914 130 QKSGKIINISSISGQVG 146 (280)
T ss_pred CCCCEEEEECCHHHCCC
T ss_conf 69958999834133268
No 273
>pfam11265 Med25_VWA Mediator complex subunit 25 von Willebrand factor type A. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex.
Probab=81.86 E-value=3.6 Score=21.55 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=39.1
Q ss_pred HHHHHHHHCC--CCCEEEEEECCCHHHHHHHHHHHCCCC--EEEEEECCCCCCEEEEEEC
Q ss_conf 8999998537--887899981766799999999978980--5899805689975999979
Q gi|254780875|r 209 IADGVSRHLN--KDGLCSVEIGYNQKVDVVRIFESRKLF--LVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 209 ii~~~~~~L~--~~G~l~lEig~~q~~~v~~ll~~~gf~--~v~~~kD~~g~~R~vi~~r 264 (264)
.+++....++ ..+.-+--|.+.|-..+.+++.+.+=. .....+||+..+|.+++-|
T Consensus 157 t~dqla~~~~f~e~~i~lSIisPRklP~L~~lf~ka~~d~~~~~~~~dyaKdprhLVLl~ 216 (219)
T pfam11265 157 TSDQLAAAINFAERSISLSIICPRKLPALRLLFNKAKRDQPLADSSKDYAKNPRHLVLLS 216 (219)
T ss_pred CHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 689999874120046258997643048999999842887555667543356872689960
No 274
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=81.64 E-value=0.57 Score=26.82 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=51.1
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53101233211012468605664214-2112331222233321001333222002444201100012222222222222
Q gi|254780875|r 82 VDSALAFSLPRIEKRDVVRILDLGTG-TGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159 (264)
Q Consensus 82 v~~~l~~~~~~~~~~~~~~vLDlG~G-sG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~ 159 (264)
|+++|+. +...-.+|=.||| -|.+++++||..-..+|+.+|.|+--+++||+ -|.+--|...+-|..+
T Consensus 152 VhTvL~~------~~~G~~vlv~GaGPiGlma~AVAKa~GA~~Vi~~d~neyRleLAkk----~Gat~~vn~~kEd~~k 220 (341)
T TIGR00692 152 VHTVLES------DLAGEDVLVIGAGPIGLMAVAVAKAAGARNVIVIDKNEYRLELAKK----MGATRVVNVAKEDLVK 220 (341)
T ss_pred HHHHHCC------CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH----CCCCEEEECCCCCHHH
T ss_conf 4465257------7688718998577478999999877278405996586479999987----0986587010147689
No 275
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=79.95 E-value=0.91 Score=25.49 Aligned_cols=83 Identities=25% Similarity=0.308 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----C-HHHHHHHCCHHHHHHCCC
Q ss_conf 42112331222233321001333222002444201100012222222222222221----0-023332011333210012
Q gi|254780875|r 107 GTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE----G-LFDVIVSNPPYIESVIVD 181 (264)
Q Consensus 107 GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~----~-~fD~IvsNPPYI~~~~~~ 181 (264)
|-|..++.+|+.....+|+++|.+++-++.|++. |.+.-+.....|+.+.+. + .+|+++--.
T Consensus 1 giG~~~iq~ak~~Ga~~Vi~~~~~~~r~~~a~~l----Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~--------- 67 (131)
T pfam00107 1 GVGLAAVQLAKALGAARVIAVDRSEEKLELAKEL----GADHVINYRDEDFVERVRELTGGRGVDVVIDCV--------- 67 (131)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECC---------
T ss_conf 9589999999984998799996988999999975----997323533221245565404997764988668---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21111123575433210112321025689999985378878999
Q gi|254780875|r 182 CLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 182 ~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
| ....+..+.+.++++|.+.+
T Consensus 68 -----------------g------~~~~~~~~~~~~~~~G~iv~ 88 (131)
T pfam00107 68 -----------------G------APATLEQALELLRPGGRVVV 88 (131)
T ss_pred -----------------C------CHHHHHHHHHHHCCCCEEEE
T ss_conf -----------------8------66679999875359978999
No 276
>PRK06194 hypothetical protein; Provisional
Probab=79.92 E-value=0.36 Score=28.10 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=5.3
Q ss_pred CEEEEECCCCCC
Q ss_conf 056642142112
Q gi|254780875|r 100 RILDLGTGTGAV 111 (264)
Q Consensus 100 ~vLDlG~GsG~i 111 (264)
+|+-+++-+|.+
T Consensus 142 ~IVNisSiaG~~ 153 (301)
T PRK06194 142 HIVNTASMAGLL 153 (301)
T ss_pred EEEEECCHHHCC
T ss_conf 999945423235
No 277
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=79.83 E-value=0.69 Score=26.29 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHCCH
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222221--00233320113
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSNPP 173 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsNPP 173 (264)
....+.+|||.--|-..-.|.++ +..|+|||--+-+=.+. . +..|+.+..|-|.+-+ .++|.+||.
T Consensus 209 ~~Gm~aVDLGAaPGGWT~qLv~r--g~~V~AVDnG~m~~~L~-----~---~~~V~H~~~dgf~f~P~~~~vdwlVCD-- 276 (356)
T PRK11760 209 ASGMRAVDLGACPGGWTYQLVRR--GMFVTAVDNGPMAESLM-----D---TGQVEHLRADGFKFRPTRKNVDWLVCD-- 276 (356)
T ss_pred CCCCEEEECCCCCCHHHHHHHHC--CCEEEEECCCCCCHHHH-----C---CCCEEEEECCCEEECCCCCCEEEEEEE--
T ss_conf 69975875586997058999977--98899865876787575-----2---887578814670563699852089970--
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCE---EEEEE--CCCH--------HHHHHHHHH
Q ss_conf 3321001221111123575433210112321025689999985378878---99981--7667--------999999999
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGL---CSVEI--GYNQ--------KVDVVRIFE 240 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~---l~lEi--g~~q--------~~~v~~ll~ 240 (264)
|-.. | .++.....++|.. || .+|-. ...+ .+.+.+.+.
T Consensus 277 ------mvek--------P--------------~rva~lm~~Wl~~-gw~~~aifnLKLPMKkR~~eV~~~l~~i~~~l~ 327 (356)
T PRK11760 277 ------MVEK--------P--------------ARVAELMAQWLVN-GWCREAIFNLKLPMKKRYEEVRQCLERIEEQLD 327 (356)
T ss_pred ------CCCC--------H--------------HHHHHHHHHHHHC-CCCHHEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ------5368--------8--------------9999999998755-600205788516776639999999999999998
Q ss_pred HCCCC-EEEEEECCCCCCEEEEE
Q ss_conf 78980-58998056899759999
Q gi|254780875|r 241 SRKLF-LVNAFKDYGGNDRVLLF 262 (264)
Q Consensus 241 ~~gf~-~v~~~kD~~g~~R~vi~ 262 (264)
+.|.. .++..+=|..++-+.+.
T Consensus 328 ~~g~~~~l~aKhLYHDREEVTv~ 350 (356)
T PRK11760 328 ENGINFQIQAKQLYHDREEVTVH 350 (356)
T ss_pred HCCCCCEEEHHHCCCCCCEEEEE
T ss_conf 64876257611223566016888
No 278
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=79.81 E-value=0.42 Score=27.69 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=53.1
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-------HHHCCCC-CCCCCCCCCCCCCCCCCC---CC
Q ss_conf 246860566421421123312222333210013332220024-------4420110-001222222222222222---10
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEI-------AKSNAVT-NGVSERFDTLQSDWFSSV---EG 163 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~-------A~~N~~~-~~~~~~i~~~~~d~~~~~---~~ 163 (264)
....++|+|.-.|-|-=+..||.. +++|+++|.|+-...+ |+.+.+. ..+..|++++++|-.+.+ ..
T Consensus 73 ~~~~p~VlDATAGLG~DafiLAsL--G~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~~~~ 150 (235)
T pfam04445 73 GGYLPTVLDATAGLGRDAFVLASL--GCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEPNID 150 (235)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHCCC
T ss_conf 899983898787757889999818--996999978899999999999998748155799996289983887999752468
Q ss_pred HHHHHHHCCHH
Q ss_conf 02333201133
Q gi|254780875|r 164 LFDVIVSNPPY 174 (264)
Q Consensus 164 ~fD~IvsNPPY 174 (264)
.+|+|.-.|=|
T Consensus 151 ~~DvIYLDPMF 161 (235)
T pfam04445 151 QPDVVYLDPMY 161 (235)
T ss_pred CCCEEEECCCC
T ss_conf 98789973768
No 279
>KOG1562 consensus
Probab=78.70 E-value=2.2 Score=22.96 Aligned_cols=108 Identities=24% Similarity=0.280 Sum_probs=69.8
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC--CC-CCCCCCCCCCCCCCC----CCHHHHH
Q ss_conf 4686056642142112331222233321001333222002444201100--01-222222222222222----1002333
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN--GV-SERFDTLQSDWFSSV----EGLFDVI 168 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~--~~-~~~i~~~~~d~~~~~----~~~fD~I 168 (264)
..+.++|=+|-|-|...=..+++-.--++.-+|++..-+++.++-.... +. ..++.+.-||-+.++ .++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCEEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCEEE
T ss_conf 89874799944884130113103460106754336789999998738875367897148995568999987036974189
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 169 VSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 169 vsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
+. ..+++.. |..+| |-+.++....+-||++|++..
T Consensus 200 i~-----dssdpvg---------pa~~l--------f~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562 200 IT-----DSSDPVG---------PACAL--------FQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EE-----ECCCCCC---------HHHHH--------HHHHHHHHHHHHHCCCCEEEE
T ss_conf 97-----1677675---------58898--------888899999985179927997
No 280
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=78.63 E-value=5.5 Score=20.34 Aligned_cols=136 Identities=24% Similarity=0.252 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHCC---CCCCCCCCCCC-CCCCCCC--CC---CCHHHHH-HHCC-H
Q ss_conf 421123312222--33321001333222002444201---10001222222-2222222--22---1002333-2011-3
Q gi|254780875|r 107 GTGAVCLALLKE--SPFFKGVGVDISCKALEIAKSNA---VTNGVSERFDT-LQSDWFS--SV---EGLFDVI-VSNP-P 173 (264)
Q Consensus 107 GsG~i~i~la~~--~~~~~v~~~Dis~~al~~A~~N~---~~~~~~~~i~~-~~~d~~~--~~---~~~fD~I-vsNP-P 173 (264)
|-|-+++.+|.. -.+.+|+|+|++++-++.-+... ..-+++.-+.- ....+.. .. -...|++ ||=| |
T Consensus 7 GlGyVGl~~a~~la~~G~~V~g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~~~~~~~~~~~~~~~~i~~~d~i~I~VpTP 86 (185)
T pfam03721 7 GLGYVGLPTAVCLAEIGHDVVGVDINQSKIDKLNNGKIPIYEPGLEELLKANVSGRLRFTTDVAEAIKEADVIFIAVPTP 86 (185)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCEEEEECCCC
T ss_conf 97874899999999489939999799899999862689746758899998734089699878799884498999973687
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--CCCHHHH-HHHHHHHCC------C
Q ss_conf 332100122111112357543321011232102568999998537887899981--7667999-999999789------8
Q gi|254780875|r 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--GYNQKVD-VVRIFESRK------L 244 (264)
Q Consensus 174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g~~q~~~-v~~ll~~~g------f 244 (264)
. . .+.+| -+.++...++...++++++-.+++|- .+.-.++ +..++++.+ |
T Consensus 87 ~-----~-------~~~~~---------d~s~l~~~~~~i~~~l~~~~liii~STVppGtt~~~~~~l~~~~~~~~~~d~ 145 (185)
T pfam03721 87 S-----K-------KGGAP---------DLTYVESAARTIGPVLKKGKVVVVKSTVPPGTTEEVVKPILEKRSGKKAVDF 145 (185)
T ss_pred C-----C-------CCCCC---------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCE
T ss_conf 6-----5-------57676---------6359999999997446799899991899988689999999997266778744
Q ss_pred CEE---------EEEECCCCCCEEEEEE
Q ss_conf 058---------9980568997599997
Q gi|254780875|r 245 FLV---------NAFKDYGGNDRVLLFC 263 (264)
Q Consensus 245 ~~v---------~~~kD~~g~~R~vi~~ 263 (264)
..+ ....|+...+|+|++.
T Consensus 146 ~l~~~PErl~~G~a~~d~~~~~riv~G~ 173 (185)
T pfam03721 146 NVASNPEFLREGNAIHDLLNPDRVVIGV 173 (185)
T ss_pred EEEECHHHCCCCCHHHHCCCCCEEEEEC
T ss_conf 8987833236642233316999799907
No 281
>PRK06500 short chain dehydrogenase; Provisional
Probab=78.61 E-value=0.53 Score=27.03 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
++.+++=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+... .++..+++|.-+. . -
T Consensus 5 ~gK~~lITGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 5 QGKTALITGGTSG-IGLETARQFAAEGARVAITGRDAATLEAARAELG-----EDALVIRNDAGSVAAQRALAQALAEAG 78 (249)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC-----CCEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 9988999376878-9999999999879999999699899999999858-----975999951799999999999999976
Q ss_pred CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 002333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 163 GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 163 ~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
++.|++|.|--+.......++..+ +|+- .+.---.| .-.+++.+..+|+.+|-+++
T Consensus 79 g~iDiLvnnAG~~~~~~~~~~~~e--~w~~--~~~vNl~~---~f~~~~~~~p~m~~~g~iI~ 134 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEA--MFDR--SFNTNVKG---PYFLIQALLPLLNNPASIVL 134 (249)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHH--HHHH--HHHHHHHH---HHHHHHHHHHHHHCCCCEEE
T ss_conf 999899989987899991669999--9999--99986456---99999999998622981899
No 282
>PRK05872 short chain dehydrogenase; Provisional
Probab=77.97 E-value=1 Score=25.08 Aligned_cols=84 Identities=21% Similarity=0.097 Sum_probs=50.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
-++..+|=-|++|| |+.++|+.+ .+++|..+|.+++.++-+.+.. ..++..+..|+-+. .
T Consensus 7 L~gKvalITGassG-IG~aiA~~la~~Ga~Vvl~dr~~~~l~~~~~~l-----g~~~~~~~~DVtd~~~v~~~v~~i~~~ 80 (296)
T PRK05872 7 LDGKVVFVTGAARG-VGAELARRLHARGAKVALVDLEEAELAALAAEL-----GDRVLTVVADVTDLAAMQAAAEEAVER 80 (296)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-----CCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 59987999271058-999999999987998999989999999999983-----887389998279999999999999997
Q ss_pred CCHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 100233320113332100122111
Q gi|254780875|r 162 EGLFDVIVSNPPYIESVIVDCLGL 185 (264)
Q Consensus 162 ~~~fD~IvsNPPYI~~~~~~~l~~ 185 (264)
-++.|++|.|-=......+.+++.
T Consensus 81 ~G~iDiLVnNAGi~~~~~~~~~~~ 104 (296)
T PRK05872 81 FGGIDVVVANAGIASYGSVLQVDP 104 (296)
T ss_pred HCCCCEEEECCCCCCCCCHHHCCH
T ss_conf 199878765562579976421998
No 283
>KOG3924 consensus
Probab=77.77 E-value=0.47 Score=27.38 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC-------C-CCCCCCCCCCCCCC-----C
Q ss_conf 246860566421421123312222333210013332220024442011000-------1-22222222222222-----2
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG-------V-SERFDTLQSDWFSS-----V 161 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~-------~-~~~i~~~~~d~~~~-----~ 161 (264)
..+.-.+.|+|.|.|-....+|....-..-+|+++....-.+|..|.+.++ - -+.++.+++++... +
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH
T ss_conf 69887234777651023678887534001034054158478899999999999998477867214036354788889988
Q ss_pred CCHHHHHHHC
Q ss_conf 1002333201
Q gi|254780875|r 162 EGLFDVIVSN 171 (264)
Q Consensus 162 ~~~fD~IvsN 171 (264)
...-++|+.|
T Consensus 270 ~~eatvi~vN 279 (419)
T KOG3924 270 QTEATVIFVN 279 (419)
T ss_pred HHCCEEEEEE
T ss_conf 6305288870
No 284
>PRK10904 DNA adenine methylase; Provisional
Probab=77.60 E-value=4.5 Score=20.92 Aligned_cols=95 Identities=11% Similarity=0.090 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCCC--CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 22222222222221--0023332011333210012211111235754332101123210256899999853788789998
Q gi|254780875|r 149 RFDTLQSDWFSSVE--GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 149 ~i~~~~~d~~~~~~--~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
++++.++|+.+.+. ++=|+|-+.|||.+.+...+- ..|. ...|+ .+.-+++.+.+..+-+.|+.+++-
T Consensus 157 ~~~i~~~df~~~~~~~~~~dfvYlDPPY~p~s~~~~F----~~Y~--~~~F~----~~d~~~L~~~~~~l~~~g~~~~lS 226 (271)
T PRK10904 157 NAFFYCESYADSMARADDGSVVYCDPPYAPLSATANF----TAYH--TNSFS----LEQQAHLAEIAEGLVERRIPVLIS 226 (271)
T ss_pred CCEEEECCHHHHHHHCCCCCEEEECCCCCCCCCCCCC----CCCC--CCCCC----HHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9979918999999732778789867987665677776----5423--57999----899999999999998579989998
Q ss_pred ECCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 17667999999999789805899805689
Q gi|254780875|r 227 IGYNQKVDVVRIFESRKLFLVNAFKDYGG 255 (264)
Q Consensus 227 ig~~q~~~v~~ll~~~gf~~v~~~kD~~g 255 (264)
.. -.+.+.++.+......+.+..-.+.
T Consensus 227 Ns--d~~~irelY~~~~i~~i~~~r~In~ 253 (271)
T PRK10904 227 NH--DTMLTREWYQRAKLHVVKVRRSISS 253 (271)
T ss_pred CC--CCHHHHHHHCCCCEEEEEEEEEEEC
T ss_conf 48--9989999865796499997888852
No 285
>KOG3790 consensus
Probab=77.15 E-value=2.2 Score=23.02 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=48.1
Q ss_pred ECCCCCHHHHHH----HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 046205122356----5553101233211012468605664214211233122223332100133322200244420110
Q gi|254780875|r 68 SSDTFEPRPETE----LLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVT 143 (264)
Q Consensus 68 ~~~vLIPRpeTE----~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~ 143 (264)
+|.-.+||-|-- .|.+.+.. -...+....|+|||.|..- ....--+...+|.|+++.++.-..+....
T Consensus 184 ~p~p~kpiyed~~iaiylh~lvsS------v~~~p~~f~d~gcgngllv--hllna~gllgyg~dhrkr~iwgy~krd~h 255 (529)
T KOG3790 184 NPNPQKPIYEDCGIAIYLHELVSS------VPSKPNKFVDIGCGNGLLV--HLLNAIGLLGYGIDHRKRNIWGYTKRDVH 255 (529)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHC------CCCCCCCHHCCCCCCHHHH--HHHHHHHHHHHHHHHHHCCHHCCCCCCCC
T ss_conf 888776420320589999998750------5555661001356742699--99988888753367642420035665331
Q ss_pred CCCCCCCCCCCCCCCCCC-CCHHHHHHHC
Q ss_conf 001222222222222222-1002333201
Q gi|254780875|r 144 NGVSERFDTLQSDWFSSV-EGLFDVIVSN 171 (264)
Q Consensus 144 ~~~~~~i~~~~~d~~~~~-~~~fD~IvsN 171 (264)
-.+..++.|.. -+..+ ++..|+.|-|
T Consensus 256 d~Vvek~vfqN--ty~~lfdkyvd~LigN 282 (529)
T KOG3790 256 DPVVEKIVFQN--TYEPLFDKYVDLLIGN 282 (529)
T ss_pred CHHHHHHCCCC--CEEECCCCHHHHHHCC
T ss_conf 01233211566--3355242157776314
No 286
>KOG0919 consensus
Probab=76.82 E-value=0.77 Score=25.96 Aligned_cols=141 Identities=19% Similarity=0.197 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHCCHH
Q ss_conf 686056642142112331222-23332100133322200244420110001222-2222222222221002333201133
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLK-ESPFFKGVGVDISCKALEIAKSNAVTNGVSER-FDTLQSDWFSSVEGLFDVIVSNPPY 174 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~-~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~-i~~~~~d~~~~~~~~fD~IvsNPPY 174 (264)
.+++||++-.|.|-.--++-. ..|.--|-|+|++..|=++-+-|-+.+-+..+ |+-... -++-.=.+|++..-||-
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~--kefd~l~~~m~lMSPpC 79 (338)
T KOG0919 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTV--KEFDKLQANMLLMSPPC 79 (338)
T ss_pred CCEEHHHHHHCCCHHHHHHHHHCCCHHHEEEEECCHHHHHHHHCCCCCCHHHCCCCCEEEH--HHHHHCCCCEEEECCCC
T ss_conf 8413335554321456567651686452787733426778884185431220135441128--66410145558507999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--C--CCH-HHHHHHHHHHCCCCEEEE
Q ss_conf 32100122111112357543321011232102568999998537887899981--7--667-999999999789805899
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--G--YNQ-KVDVVRIFESRKLFLVNA 249 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g--~~q-~~~v~~ll~~~gf~~v~~ 249 (264)
=|...+ ..+.+.. +|+. |.+-.+-.++..+.++ --++.+|- | ..| .+...+-+++.||...++
T Consensus 80 QPfTRi-G~q~D~~--D~Rs------~aflhil~~lP~~q~L---PeYIL~ENVkGFE~S~ar~~~i~~lencGf~~~Ef 147 (338)
T KOG0919 80 QPFTRI-GLQRDTE--DKRS------DAFLHILGLLPECQEL---PEYILMENVKGFESSQARNQFIESLENCGFHWREF 147 (338)
T ss_pred CCHHHH-CCCCCCC--CCHH------HHHHHHHHHHHHHHHH---HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHE
T ss_conf 841232-2324555--7106------8899997343665410---47787762244014668999999999558024520
Q ss_pred EE
Q ss_conf 80
Q gi|254780875|r 250 FK 251 (264)
Q Consensus 250 ~k 251 (264)
+-
T Consensus 148 iL 149 (338)
T KOG0919 148 IL 149 (338)
T ss_pred EC
T ss_conf 43
No 287
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=76.57 E-value=0.38 Score=27.97 Aligned_cols=106 Identities=25% Similarity=0.232 Sum_probs=65.1
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCCCCCCCC--CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------------CCH
Q ss_conf 5664214211233122223--33210013332--2200244420110001222222222222222------------100
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES--PFFKGVGVDIS--CKALEIAKSNAVTNGVSERFDTLQSDWFSSV------------EGL 164 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis--~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------------~~~ 164 (264)
+|==|..|| |+..+|+++ .+++|...|.+ ++..+.+.+.+..+|.+ +.-+..|+-+.- -+.
T Consensus 4 alVTGaaSG-IG~~iA~~LA~aGa~v~~~d~~~~~~~~~~~~~~~~~~G~~--v~~~~~D~T~~~e~~~~~~~~~~~fG~ 80 (258)
T TIGR01963 4 ALVTGAASG-IGLAIAKALAAAGANVVVNDLGEADEGAEAAAKVATDAGGS--VIYLVADVTKEEEIADMIQAVAAEFGG 80 (258)
T ss_pred EEEECCCHH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999658716-78999999987298899846788789999999999961883--577514788889999999999998568
Q ss_pred HHHHHHCCHHHHHHC-----CCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 233320113332100-----1221111123575433--2101123210256899999853788789
Q gi|254780875|r 165 FDVIVSNPPYIESVI-----VDCLGLEVRDFDPRIS--LDGGIDGLSHYRTIADGVSRHLNKDGLC 223 (264)
Q Consensus 165 fD~IvsNPPYI~~~~-----~~~l~~~v~~~EP~~A--L~gg~dGl~~~~~ii~~~~~~L~~~G~l 223 (264)
.|+.|.| ..- +++-|++ +|+-.+| |.+ --..++.+-.++|+.||=
T Consensus 81 ~DiLVNN-----AG~QhVaPiEeFP~~--~w~~iiav~Lts-------aF~t~raAlP~Mk~~gwG 132 (258)
T TIGR01963 81 LDILVNN-----AGIQHVAPIEEFPPE--KWDRIIAVMLTS-------AFHTIRAALPHMKKQGWG 132 (258)
T ss_pred CCEEEEC-----CCEEECCCCCCCCHH--HHHHHHHHCCCH-------HHHHHHHCCCCCCCCCCC
T ss_conf 8748844-----640141765477866--787373021688-------899997506432137855
No 288
>pfam05711 TylF Macrocin-O-methyltransferase (TylF). This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex.
Probab=75.97 E-value=5 Score=20.65 Aligned_cols=194 Identities=12% Similarity=0.083 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHCCCC------HHHHCCCEEE------EEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 99999999998974983------7685363144------23767750462051223565553101233211012468605
Q gi|254780875|r 34 QRFFLTNAIVRSLKHES------IHRILGWRDF------YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRI 101 (264)
Q Consensus 34 ~~~~l~~~i~rr~~g~P------l~YIlg~~~F------~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~v 101 (264)
....+.++++|-+.+.. .........| .|.+.-...++.|-|..-+-|...+-.. ..+.-+--+
T Consensus 4 ~~~~yldll~~~l~~~~y~~~~~~~~~~~~~~~~~~~r~~g~dwp~~a~tM~g~~RL~nl~~~ve~V----i~~~IpGDf 79 (249)
T pfam05711 4 TRELYLDLLKRVLTNTIYEDPTHVAGLVTDSAFDPEARELGLDWPTVAHTMIGLKRLDNLQQCVERV----LRDGVPGDF 79 (249)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH----HHCCCCCCE
T ss_conf 6899999999997487257887667655467788667753687886331255799999999999999----975999757
Q ss_pred EEEECCCCCCCCCCCCCC-----CCCCCCCCCC--------------------------CCCCHHHHHHCCCCCCC-CCC
Q ss_conf 664214211233122223-----3321001333--------------------------22200244420110001-222
Q gi|254780875|r 102 LDLGTGTGAVCLALLKES-----PFFKGVGVDI--------------------------SCKALEIAKSNAVTNGV-SER 149 (264)
Q Consensus 102 LDlG~GsG~i~i~la~~~-----~~~~v~~~Di--------------------------s~~al~~A~~N~~~~~~-~~~ 149 (264)
++.|+--|.-.+.++... .+-+|.+.|- ....++.-++|..++++ +++
T Consensus 80 VEcGVWrGGs~ilm~~~L~~~g~~~R~V~lfDTFeGmp~pt~~d~~~d~~~~~~~~~~~~~~s~e~Vk~Nf~~~~l~dd~ 159 (249)
T pfam05711 80 IETGVWRGGACIFMRGVLAAYGVTDRTVWVADSFAGVPAPDEDDHPLDREMRLHEYNEVLAVPLETVRENFARYGLLDDQ 159 (249)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 99754347999999999997088788499971578989997112433236777641403239899999999970688545
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-EC
Q ss_conf 22222222222210023332011333210012211111235754332101123210256899999853788789998-17
Q gi|254780875|r 150 FDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE-IG 228 (264)
Q Consensus 150 i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE-ig 228 (264)
+.|++|.+.+.+++ .|| ..+.-+-.+.=-||+ .+..++.....|.+||.+++- .+
T Consensus 160 V~fikG~f~DTLp~-------~~~----~~Ia~lrlD~D~YeS-------------t~~~Le~lypkl~~GG~iiiDDY~ 215 (249)
T pfam05711 160 VRFLPGWFKDTLPT-------API----ERLAVLRLDGDLYES-------------TMDALTNLYPKLSPGGFVIVDDYC 215 (249)
T ss_pred EEEECCCHHHHCCC-------CCC----CCEEEEEEECCCHHH-------------HHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 17955652320154-------884----527899952431188-------------999999973406888289992689
Q ss_pred C-CHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 6-67999999999789805899805689
Q gi|254780875|r 229 Y-NQKVDVVRIFESRKLFLVNAFKDYGG 255 (264)
Q Consensus 229 ~-~q~~~v~~ll~~~gf~~v~~~kD~~g 255 (264)
. ...+.|.++..+.|...--..=|..|
T Consensus 216 ~~gcr~Av~ef~~~~~i~~~l~~ID~tg 243 (249)
T pfam05711 216 IPACRQAVHDYRDRHGITDPIHEIDRTG 243 (249)
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEECCCE
T ss_conf 6679999999999629987717860752
No 289
>PRK06139 short chain dehydrogenase; Provisional
Probab=75.93 E-value=0.53 Score=27.04 Aligned_cols=84 Identities=14% Similarity=-0.033 Sum_probs=52.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222------------210
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~ 163 (264)
+..++=-|++|| |+-++|+.+ .+++|+.++.+++.++-+.+.+...+.+ +.++..|+-+. ..+
T Consensus 6 gKvvlITGASsG-IG~aiA~~~A~~Ga~Vvl~~R~~~~L~~~a~e~~~~G~~--~~~v~~DVsd~~~v~~~~~~~~~~~G 82 (324)
T PRK06139 6 GAVVVITGASSG-IGRATAEAFARRGARLVLAARDEEALFEVAEECRALGAE--VLVVPTDVTHADQVQALATQAASFLG 82 (324)
T ss_pred CCEEEEECHHHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 977999382549-999999999987998999989999999999999954994--89997667885789999999999749
Q ss_pred HHHHHHHCCHHHHHHCCCCCC
Q ss_conf 023332011333210012211
Q gi|254780875|r 164 LFDVIVSNPPYIESVIVDCLG 184 (264)
Q Consensus 164 ~fD~IvsNPPYI~~~~~~~l~ 184 (264)
+.|++|.|-=+-....+.+++
T Consensus 83 ~IDiLVNNAGi~~~g~~~e~~ 103 (324)
T PRK06139 83 RIDVWFNNVGVGAVGRFEETP 103 (324)
T ss_pred CCCEEEECCCCCCCCCCCCCC
T ss_conf 987886457557777535599
No 290
>PRK06181 short chain dehydrogenase; Provisional
Probab=75.69 E-value=0.52 Score=27.08 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=32.6
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCCHHH
Q ss_conf 5664214211233122223--33210013332220024442011000122222222222222------------210023
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEGLFD 166 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~~fD 166 (264)
+|=-|++|| |+.++|+.+ .+++|+.+|.+++.++-+.+.....+.+ +..+..|+-+. .-++.|
T Consensus 4 ~lITGassG-IG~a~A~~la~~Ga~vvl~~r~~~~l~~~~~~l~~~g~~--~~~~~~Dvs~~~~~~~~~~~~~~~~G~iD 80 (263)
T PRK06181 4 VIITGASEG-IGRALAVRLARAGARLVLAARNEERLASLAQELANYGAE--ALVVATDVSDAEACERLIEAAVAHFGGID 80 (263)
T ss_pred EEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999581019-999999999987998999988999999999999954996--79998079999999999999999829964
Q ss_pred HHHHCC
Q ss_conf 332011
Q gi|254780875|r 167 VIVSNP 172 (264)
Q Consensus 167 ~IvsNP 172 (264)
++|.|-
T Consensus 81 iLVNNA 86 (263)
T PRK06181 81 ILVNNA 86 (263)
T ss_pred EEEECC
T ss_conf 899878
No 291
>PRK07109 short chain dehydrogenase; Provisional
Probab=75.60 E-value=0.59 Score=26.75 Aligned_cols=75 Identities=19% Similarity=0.038 Sum_probs=49.3
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
.++..++=-|+.|| |+.++|+.+ .+++|..++.++++++-+.+-+...|. ++..+..|+-+. .
T Consensus 6 l~~KvVvITGASsG-IGra~A~~fA~~Ga~Vvl~aR~~~~L~~~a~e~~~~G~--~~~~~~~DVsd~~~v~~~~~~~~~~ 82 (338)
T PRK07109 6 LGRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEGLAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEE 82 (338)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 69898999484349-99999999998799899998999999999999996398--1899980179999999999999998
Q ss_pred CCHHHHHHHCCH
Q ss_conf 100233320113
Q gi|254780875|r 162 EGLFDVIVSNPP 173 (264)
Q Consensus 162 ~~~fD~IvsNPP 173 (264)
.+.+|+.|.|-=
T Consensus 83 ~G~IDvlVNNAG 94 (338)
T PRK07109 83 LGPIDTWVNNAM 94 (338)
T ss_pred HCCCCEEEECCC
T ss_conf 499888865466
No 292
>PRK07832 short chain dehydrogenase; Provisional
Probab=75.43 E-value=0.49 Score=27.25 Aligned_cols=83 Identities=17% Similarity=0.040 Sum_probs=45.3
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222---------2---1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~f 165 (264)
++|=-|++|| |+.++|.++ .+++|+.+|.+++.++-..+.+...+-+. ..+...|+-+. . .++.
T Consensus 2 ~alITGassG-IG~a~A~~la~~Ga~v~l~~r~~~~l~~~~~~l~~~g~~~-~~~~~~Dvsd~~~v~~~~~~~~~~~g~i 79 (272)
T PRK07832 2 RCFVTGAASG-IGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTV-PEHRALDISDYDAVAAFAADIHAAHPSM 79 (272)
T ss_pred EEEEECCCHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCE-EEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 7999472019-9999999999889989999898899999999998458971-4788566899999999999999972998
Q ss_pred HHHHHCCHHHHHHCCCCCC
Q ss_conf 3332011333210012211
Q gi|254780875|r 166 DVIVSNPPYIESVIVDCLG 184 (264)
Q Consensus 166 D~IvsNPPYI~~~~~~~l~ 184 (264)
|++|.|--.-.......++
T Consensus 80 DiLiNNAGi~~~g~~~~~~ 98 (272)
T PRK07832 80 DVVMNIAGISAWGTVDRLT 98 (272)
T ss_pred CEEEECCCCCCCCCCCCCC
T ss_conf 8899878768888734589
No 293
>pfam03686 UPF0146 Uncharacterized protein family (UPF0146). The function of this family of proteins is unknown.
Probab=75.38 E-value=0.97 Score=25.31 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=41.1
Q ss_pred CCCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHH-
Q ss_conf 468605664214211-2331222233321001333222002444201100012222222222222221---00233320-
Q gi|254780875|r 96 RDVVRILDLGTGTGA-VCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE---GLFDVIVS- 170 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~-i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~---~~fD~Ivs- 170 (264)
....++.++|-|.=- ++..|+. .+..++++|+++.|+. . -+.++.-|+|++-. ...|+|-|
T Consensus 12 ~~~gkiVEVGIG~~~~vA~~L~~--~g~dv~~tDi~~~av~--------~----gl~~v~DDif~P~~~lY~~A~lIYSI 77 (127)
T pfam03686 12 NARGKVVEVGIGFFLDVAKRLAE--RGFDVLATDINEKAVP--------E----GLRFVVDDITNPNISIYEGADLIYSI 77 (127)
T ss_pred CCCCCEEEEECCCCHHHHHHHHH--CCCCEEEEECCCCCCC--------C----CCCEEECCCCCCCHHHHCCCCEEEEC
T ss_conf 87885899913688899999998--5996899977765766--------7----88878725889898895587889981
Q ss_pred CCH
Q ss_conf 113
Q gi|254780875|r 171 NPP 173 (264)
Q Consensus 171 NPP 173 (264)
+||
T Consensus 78 RPp 80 (127)
T pfam03686 78 RPP 80 (127)
T ss_pred CCC
T ss_conf 898
No 294
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=75.28 E-value=2.2 Score=22.97 Aligned_cols=40 Identities=23% Similarity=0.032 Sum_probs=26.5
Q ss_pred CEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 0566421421123312222--33321001333222002444201
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKE--SPFFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~--~~~~~v~~~Dis~~al~~A~~N~ 141 (264)
+|+=+|+ |.||-|+|+. ..+.+|+|+|.++.+++.|.++-
T Consensus 3 kI~IiGl--GLIGgSla~al~~~~~~V~g~d~~~~~~~~A~~~g 44 (280)
T PRK07417 3 NIGIVGL--GLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERG 44 (280)
T ss_pred EEEEEEC--CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
T ss_conf 8999931--85799999999968997999979999999999869
No 295
>PRK05866 short chain dehydrogenase; Provisional
Probab=75.18 E-value=0.39 Score=27.93 Aligned_cols=76 Identities=20% Similarity=0.133 Sum_probs=50.7
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C-
Q ss_conf 12468605664214211233122223--33210013332220024442011000122222222222222---------2-
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V- 161 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~- 161 (264)
.+-+...+|=-|.+|| |+-++|+.+ .+++|+.++.+++.++-..+.....|- ++..+..|+-+. .
T Consensus 36 ~dL~GKvaLITGassG-IG~aiA~~la~~Ga~Vvl~~R~~~~l~~~~~~i~~~g~--~~~~~~~Dvtd~~~v~~~v~~~~ 112 (290)
T PRK05866 36 VDLTGKRILLTGASSG-IGEAAAEKFARRGATVVAVARRKDLLDAVADRITAAGG--DAMAIPCDLSDLDAVDALVADVE 112 (290)
T ss_pred CCCCCCEEEECCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7899998999081309-99999999998699899998999999999999996499--08999778898999999999999
Q ss_pred --CCHHHHHHHCC
Q ss_conf --10023332011
Q gi|254780875|r 162 --EGLFDVIVSNP 172 (264)
Q Consensus 162 --~~~fD~IvsNP 172 (264)
.+..|++|.|=
T Consensus 113 ~~~G~iDiLVNNA 125 (290)
T PRK05866 113 ERIGGVDILINNA 125 (290)
T ss_pred HHHCCCCEEEECC
T ss_conf 9859988899757
No 296
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=74.97 E-value=6.9 Score=19.71 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCC----CCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 122356555310123321101246860566421421123----312222333210013332220024
Q gi|254780875|r 74 PRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVC----LALLKESPFFKGVGVDISCKALEI 136 (264)
Q Consensus 74 PRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~----i~la~~~~~~~v~~~Dis~~al~~ 136 (264)
-|.|++++--.+-+.. ........+|+|+|+.-=. =+++.+..-...+.+|+|..-+.-
T Consensus 59 TRtEaaIl~~~a~Eia----~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ 121 (321)
T COG4301 59 TRTEAAILQARAAEIA----SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRA 121 (321)
T ss_pred CHHHHHHHHHHHHHHH----HHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 3268999999999999----76086548971689628899999975213774035540222899998
No 297
>PRK07102 short chain dehydrogenase; Provisional
Probab=74.43 E-value=0.51 Score=27.16 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=38.4
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC---------CCCCHHHHH
Q ss_conf 05664214211233122223--3321001333222002444201100012222222222222---------221002333
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS---------SVEGLFDVI 168 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~---------~~~~~fD~I 168 (264)
+||=.|.+|| |+.++|+++ .+++|+.++.+.+.++-..+.....+- ..+.+...|..+ ...+.+|++
T Consensus 3 ~vlITGassG-IG~a~A~~la~~G~~v~l~~R~~~~l~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~ 80 (243)
T PRK07102 3 KILIIGATSD-IARACARRYAAAGARLYLAARDTERLERIAADLEARGA-VAVATHELDILDTARHAAFLDNLPALPDTV 80 (243)
T ss_pred EEEEECCCHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHHHHCCEE
T ss_conf 7999157459-99999999998799899998988999999999985358-628998434036999999999987537979
Q ss_pred HHCCH
Q ss_conf 20113
Q gi|254780875|r 169 VSNPP 173 (264)
Q Consensus 169 vsNPP 173 (264)
+.|-=
T Consensus 81 v~~aG 85 (243)
T PRK07102 81 LIAVG 85 (243)
T ss_pred EEEEE
T ss_conf 99730
No 298
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.96 E-value=0.62 Score=26.58 Aligned_cols=79 Identities=19% Similarity=0.098 Sum_probs=49.9
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
+..+|=.|.++| |+.++++.+ .+++|+.+|.+++.++-+.+.....+ .++.++..|+-+. . -+
T Consensus 6 gK~alITGgs~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (253)
T PRK12826 6 GRVALVTGAARG-IGRAIAVRFAADGADVIVVDICGQAAAATAELVAAAG--GKARAYQVDVRDRAALKALVAAGVERFG 82 (253)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 988999489778-9999999999879989999898899999999998509--9589999517999999999999999839
Q ss_pred HHHHHHHCCHHHHHHC
Q ss_conf 0233320113332100
Q gi|254780875|r 164 LFDVIVSNPPYIESVI 179 (264)
Q Consensus 164 ~fD~IvsNPPYI~~~~ 179 (264)
+.|++|.|--+.....
T Consensus 83 ~iD~lvnnAg~~~~~~ 98 (253)
T PRK12826 83 RLDILVANAGIFPLTP 98 (253)
T ss_pred CCCEEEECCCCCCCCC
T ss_conf 9878998998899998
No 299
>PRK08251 short chain dehydrogenase; Provisional
Probab=72.93 E-value=0.67 Score=26.38 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=35.6
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222---------2---1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~f 165 (264)
+||=.|++|| |+.++|+++ .+++++.++.+.+.++-...-.....-..++.++..|+-+. . -+..
T Consensus 4 ~vlITGAssG-IG~alA~~la~~G~~v~l~~r~~~~l~~~~~el~~~~~~~~v~~~~~Dvsd~~~v~~~~~~~~~~~g~i 82 (248)
T PRK08251 4 KILITGASSG-LGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFSDELGGL 82 (248)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8999478639-999999999987998999989888999999999873799739999786786899999999999980999
Q ss_pred HHHHHCCH
Q ss_conf 33320113
Q gi|254780875|r 166 DVIVSNPP 173 (264)
Q Consensus 166 D~IvsNPP 173 (264)
|++|.|-=
T Consensus 83 D~lvnNAG 90 (248)
T PRK08251 83 DRVIVNAG 90 (248)
T ss_pred CEEEECCC
T ss_conf 89998576
No 300
>PRK07024 short chain dehydrogenase; Provisional
Probab=72.64 E-value=0.82 Score=25.79 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHH
Q ss_conf 05664214211233122223--33210013332220024442
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~ 139 (264)
+||=.|++|| |+.++|+++ .++++..++.+.+.++-..+
T Consensus 4 ~VlITGassG-IG~a~A~~la~~G~~v~l~~R~~~~L~~~~~ 44 (256)
T PRK07024 4 KVFITGASSG-IGQALAREYARQGATLGLVARRTDALQAFAA 44 (256)
T ss_pred EEEEECCCHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 8999846029-9999999999889989999898899999999
No 301
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=72.64 E-value=0.52 Score=27.08 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=43.6
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------C------CCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222------2------1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------V------EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------~------~~~f 165 (264)
+||=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+.....+ ++.++..|+-+. + -++.
T Consensus 2 nVlITGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i 77 (259)
T PRK08340 2 NVLVTASSRG-IGFNVARELLKKGARVVISSRNEENLEKALKELKELG---EVYAIKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC---CEEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 8999758778-9999999999879999999799899999999987418---87999963699899999999999985998
Q ss_pred HHHHHCCHHH
Q ss_conf 3332011333
Q gi|254780875|r 166 DVIVSNPPYI 175 (264)
Q Consensus 166 D~IvsNPPYI 175 (264)
|++|.|.+.+
T Consensus 78 D~LVnNAg~~ 87 (259)
T PRK08340 78 DALVWNAGNV 87 (259)
T ss_pred CEEEECCCCC
T ss_conf 8899857667
No 302
>PRK07677 short chain dehydrogenase; Provisional
Probab=72.28 E-value=0.49 Score=27.28 Aligned_cols=70 Identities=21% Similarity=0.119 Sum_probs=47.0
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222---------2---1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~f 165 (264)
.+|=-| ||+-|+.++|+++ .+++|+.+|.+.+.++-+.+..+..+- ++.++++|+-+. . -+++
T Consensus 5 ~alVTG-gs~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i 81 (254)
T PRK07677 5 VVIITG-GSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPG--QVLTVQMDVRNPDDVQKMIEQIDEKFGRI 81 (254)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 899958-767899999999998799999996999999999999985699--09999803899999999999999983998
Q ss_pred HHHHHCC
Q ss_conf 3332011
Q gi|254780875|r 166 DVIVSNP 172 (264)
Q Consensus 166 D~IvsNP 172 (264)
|++|.|-
T Consensus 82 DiLVnNA 88 (254)
T PRK07677 82 DALINNA 88 (254)
T ss_pred CEEEECC
T ss_conf 8899757
No 303
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.09 E-value=0.82 Score=25.79 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=46.5
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222---------2---100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~ 164 (264)
..+|=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+-.+..+. ++.++..|+-+. . -+.
T Consensus 6 K~~lITGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (253)
T PRK08217 6 KVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQEKLEEAVAQCAALGG--EAEVYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 88999488778-99999999998799899997999999999999996599--4899982479999999999999998399
Q ss_pred HHHHHHCC
Q ss_conf 23332011
Q gi|254780875|r 165 FDVIVSNP 172 (264)
Q Consensus 165 fD~IvsNP 172 (264)
.|++|.|-
T Consensus 83 iD~lVnNA 90 (253)
T PRK08217 83 LNGLINNA 90 (253)
T ss_pred CCEEEECC
T ss_conf 85999857
No 304
>pfam04378 DUF519 Protein of unknown function (DUF519). Bacterial family of unknown function, possibly secreted.
Probab=71.47 E-value=4 Score=21.27 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=53.6
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------CCHHHHHHHCCHH
Q ss_conf 5664214211233122223332100133322200244420110001222222222222222------1002333201133
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV------EGLFDVIVSNPPY 174 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------~~~fD~IvsNPPY 174 (264)
-++.-.||=.|+-.+.+ ++-+.+.+|..+.-.+.-++|... ..|+.+.+.|-++.+ .++=-+|+-.|||
T Consensus 61 ~l~~YPGSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~a~lPP~~rRglVLIDPpY 135 (245)
T pfam04378 61 KLRYYPGSPLLARQLLR--AQDRLVLCELHPSDYPLLKAEFAG---DRRVRVHQADGFAALKAFLPPKERRGLVLIDPPF 135 (245)
T ss_pred CCCCCCCCHHHHHHHCC--CCCCEEEEECCHHHHHHHHHHHCC---CCCCEEEECCHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 96888998999998489--667689885597999999987455---8765799365899999668997786799967986
Q ss_pred HHHHC
Q ss_conf 32100
Q gi|254780875|r 175 IESVI 179 (264)
Q Consensus 175 I~~~~ 179 (264)
=..+|
T Consensus 136 E~k~e 140 (245)
T pfam04378 136 ELKDE 140 (245)
T ss_pred CCHHH
T ss_conf 66569
No 305
>PRK10742 putative methyltransferase; Provisional
Probab=71.35 E-value=0.94 Score=25.41 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=53.7
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-------HHHHHHCCCCCC-CCCCCCCCCCCCCCCC---CC
Q ss_conf 246860566421421123312222333210013332220-------024442011000-1222222222222222---10
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKA-------LEIAKSNAVTNG-VSERFDTLQSDWFSSV---EG 163 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~a-------l~~A~~N~~~~~-~~~~i~~~~~d~~~~~---~~ 163 (264)
....++|+|.-.|-|-=+..||.. +++|+.+|.||.. ++-|..+.+... +.+|++++++|-.+.+ ..
T Consensus 86 ~~~~P~VlDATAGLGrDAfvLAsl--Gc~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~gds~~~L~~~~~ 163 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHCCC
T ss_conf 899981898788746889999817--986999978899999999999998738155899996167865868999973588
Q ss_pred HHHHHHHCCHH
Q ss_conf 02333201133
Q gi|254780875|r 164 LFDVIVSNPPY 174 (264)
Q Consensus 164 ~fD~IvsNPPY 174 (264)
.+|+|.-.|=|
T Consensus 164 ~~DVIYLDPMF 174 (250)
T PRK10742 164 RPQVVYLDPMF 174 (250)
T ss_pred CCCEEEECCCC
T ss_conf 98889973667
No 306
>PRK08945 short chain dehydrogenase; Provisional
Probab=71.16 E-value=1.2 Score=24.74 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=48.9
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC-----------C
Q ss_conf 012468605664214211233122223--332100133322200244420110001222222222222-----------2
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF-----------S 159 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~-----------~ 159 (264)
.+.-++..+|=-|.++| |+.++|+.+ .+++|+.++.+.+.++-+.+.....+-. +..++..|+. +
T Consensus 8 ~~~L~gK~~lITGas~G-IG~aiA~~la~~Ga~Vil~~r~~~~l~~~~~el~~~~~~-~~~~~~~d~~~~~~~~~~~~~~ 85 (245)
T PRK08945 8 PDLLKDRIILVTGAGDG-IGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDLLGATEQNYQDLAD 85 (245)
T ss_pred CCCCCCCEEEEECCCHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEEEECCCCCHHHHHHHHH
T ss_conf 86789798999488618-999999999987998999969889999999999974798-4489994467599999999999
Q ss_pred CC---CCHHHHHHHCCHH
Q ss_conf 22---1002333201133
Q gi|254780875|r 160 SV---EGLFDVIVSNPPY 174 (264)
Q Consensus 160 ~~---~~~fD~IvsNPPY 174 (264)
.. -++.|++|.|--+
T Consensus 86 ~i~~~~g~iD~lVnNAG~ 103 (245)
T PRK08945 86 TIEEQFGRLDGVLHNAGL 103 (245)
T ss_pred HHHHHHCCCCEEEECCCC
T ss_conf 999980998799988875
No 307
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=70.42 E-value=1 Score=25.19 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
-++..+|=-|.++| |+.++|+.+ .+++|+.+|.+.+.++-+.+.....+- ++.+++.|+-+. .
T Consensus 8 L~gKvalVTGas~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dvtd~~~v~~~~~~~~~~ 84 (278)
T PRK08277 8 LKGKVAVITGGGGV-LGGAMAKELARAGAKVAILDRNQEKAEAVVEEIKANGG--EAIALKADVLDKESLEQARQQILKD 84 (278)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 89998999586748-99999999998799899997988999999999984599--0999982489999999999999998
Q ss_pred CCHHHHHHHC
Q ss_conf 1002333201
Q gi|254780875|r 162 EGLFDVIVSN 171 (264)
Q Consensus 162 ~~~fD~IvsN 171 (264)
-++.|++|.|
T Consensus 85 ~G~iDiLVNn 94 (278)
T PRK08277 85 FGRCDILING 94 (278)
T ss_pred HCCCCEEEEC
T ss_conf 4998889988
No 308
>KOG1596 consensus
Probab=68.78 E-value=9.7 Score=18.74 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCH----HHHHHCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 101246860566421421123312222--3332100133322200----24442011000122222222222222-----
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAVCLALLKE--SPFFKGVGVDISCKAL----EIAKSNAVTNGVSERFDTLQSDWFSS----- 160 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i~i~la~~--~~~~~v~~~Dis~~al----~~A~~N~~~~~~~~~i~~~~~d~~~~----- 160 (264)
++..++..+||=||.+||-- +|-.+. -|.--|+|++.|+.+= .+|++. .+ |.-+--|..-+
T Consensus 151 nihikpGsKVLYLGAasGtt-VSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------tN-iiPIiEDArhP~KYRm 222 (317)
T KOG1596 151 NIHIKPGSKVLYLGAASGTT-VSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------TN-IIPIIEDARHPAKYRM 222 (317)
T ss_pred CEEECCCCEEEEEECCCCCE-EEHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCC------CC-CEEEEECCCCCHHEEE
T ss_conf 12535886699963367843-3300003077743999984355328899876426------87-0024504778500356
Q ss_pred CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCH------HHH
Q ss_conf 21002333201133321001221111123575433210112321025689999985378878999817667------999
Q gi|254780875|r 161 VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQ------KVD 234 (264)
Q Consensus 161 ~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q------~~~ 234 (264)
+-+..|+|+|.-| + |. -.+-+.-++..+||++|.+.+-|..+. .+.
T Consensus 223 lVgmVDvIFaDva----------q-------pd-----------q~RivaLNA~~FLk~gGhfvisikancidstv~ae~ 274 (317)
T KOG1596 223 LVGMVDVIFADVA----------Q-------PD-----------QARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEA 274 (317)
T ss_pred EEEEEEEEECCCC----------C-------CH-----------HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHH
T ss_conf 6105778962689----------7-------03-----------445453346665026871899985465444454788
Q ss_pred ----HHHHHHHCCCCEEEE
Q ss_conf ----999999789805899
Q gi|254780875|r 235 ----VVRIFESRKLFLVNA 249 (264)
Q Consensus 235 ----v~~ll~~~gf~~v~~ 249 (264)
=.+.|++..++..|.
T Consensus 275 vFa~Ev~klqee~lkP~Eq 293 (317)
T KOG1596 275 VFAAEVKKLQEEQLKPKEQ 293 (317)
T ss_pred HHHHHHHHHHHHCCCCHHE
T ss_conf 8999999988752680232
No 309
>PRK07062 short chain dehydrogenase; Provisional
Probab=68.36 E-value=0.92 Score=25.46 Aligned_cols=76 Identities=17% Similarity=0.052 Sum_probs=48.4
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
...+|=-|.++| |+.++++.+ .+++|+.+|.+++.++-+.+......-..++..+..|+.+. . -+
T Consensus 8 gK~alITG~s~G-IG~a~a~~la~~Ga~Vvi~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G 86 (265)
T PRK07062 8 GRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 998999575779-9999999999879999999798899999999998736996599997579999999999999999839
Q ss_pred HHHHHHHCCHH
Q ss_conf 02333201133
Q gi|254780875|r 164 LFDVIVSNPPY 174 (264)
Q Consensus 164 ~fD~IvsNPPY 174 (264)
+.|++|.|...
T Consensus 87 ~iDiLVnNAg~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
T ss_conf 98889977888
No 310
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=68.13 E-value=0.66 Score=26.40 Aligned_cols=71 Identities=23% Similarity=0.104 Sum_probs=47.6
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222---------2---100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~ 164 (264)
..++=.|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+.....+. ++.+++.|+.+. . .++
T Consensus 6 Kv~lITGgs~G-IG~a~a~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (246)
T PRK05653 6 KTALVTGASRG-IGRAIALRLAADGARVVIYDSNEEAAEALAEELRAAGG--EAALLVFDVTDEAAVRALIEAAVERFGG 82 (246)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 88999389758-99999999998799999997999999999999996599--4899997289999999999999997499
Q ss_pred HHHHHHCC
Q ss_conf 23332011
Q gi|254780875|r 165 FDVIVSNP 172 (264)
Q Consensus 165 fD~IvsNP 172 (264)
.|.+|.|-
T Consensus 83 iDilvnnA 90 (246)
T PRK05653 83 LDVLVNNA 90 (246)
T ss_pred CCEEEECC
T ss_conf 86999899
No 311
>KOG1209 consensus
Probab=67.78 E-value=1.3 Score=24.56 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCC-CHHHHH-HCCCCCCCC----CCCCCCCCCCCCCCCCHHHH
Q ss_conf 468605664214211233122223--3321001333222-002444-201100012----22222222222222100233
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCK-ALEIAK-SNAVTNGVS----ERFDTLQSDWFSSVEGLFDV 167 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~-al~~A~-~N~~~~~~~----~~i~~~~~d~~~~~~~~fD~ 167 (264)
..+..||=.||.+|-|+-++|+++ .+.+|+|+--+-+ +-+++. .-..-++++ +.+.-+.+.+.++..|+.|+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~ 84 (289)
T KOG1209 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL 84 (289)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 67975999605776534999999986781999970224607667886097058705687277899888886189982688
Q ss_pred HHHC
Q ss_conf 3201
Q gi|254780875|r 168 IVSN 171 (264)
Q Consensus 168 IvsN 171 (264)
.+-|
T Consensus 85 L~NN 88 (289)
T KOG1209 85 LYNN 88 (289)
T ss_pred EECC
T ss_conf 8717
No 312
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=67.19 E-value=0.68 Score=26.33 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=41.3
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHHH
Q ss_conf 5664214211233122223--33210013332220024442011000122222222222222---------2---10023
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLFD 166 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~fD 166 (264)
+|=-|.++| |+.++|+.+ .+++|+.+|.+.+.++-+.+......-..++..++.|+.+. . -++.|
T Consensus 5 alITG~s~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 83 (259)
T PRK12384 5 AVVIGGGQT-LGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRVD 83 (259)
T ss_pred EEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999468868-9999999999879999999798899999999998624886089998327999999999999999829971
Q ss_pred HHHHCCHHHHHH
Q ss_conf 332011333210
Q gi|254780875|r 167 VIVSNPPYIESV 178 (264)
Q Consensus 167 ~IvsNPPYI~~~ 178 (264)
++|.|--+....
T Consensus 84 ilVnnAG~~~~~ 95 (259)
T PRK12384 84 LLVYSAGIAKAA 95 (259)
T ss_pred EEEECCCCCCCC
T ss_conf 999899777889
No 313
>PRK09242 tropinone reductase; Provisional
Probab=67.04 E-value=1.5 Score=24.11 Aligned_cols=76 Identities=21% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
-++.++|=-|.++| |+.++++.+ .+++|+.+|.+.+.++.+...........++.++..|+-+. .
T Consensus 8 L~gK~alITGgs~G-IG~a~a~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 86 (258)
T PRK09242 8 LDGQTALITGASKG-IGLAIARELLGLGADVLIVARDADALAQARDELAEEFPERELHGLAADVSDDEDRRAILDWVEDH 86 (258)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 79999999484868-99999999998799899996988999999999986447972999993079999999999999997
Q ss_pred CCHHHHHHHCC
Q ss_conf 10023332011
Q gi|254780875|r 162 EGLFDVIVSNP 172 (264)
Q Consensus 162 ~~~fD~IvsNP 172 (264)
.++.|++|.|-
T Consensus 87 ~g~iDiLVnnA 97 (258)
T PRK09242 87 WDGLHILVNNA 97 (258)
T ss_pred CCCCCEEEECC
T ss_conf 49997999899
No 314
>PRK07454 short chain dehydrogenase; Provisional
Probab=66.65 E-value=1.2 Score=24.73 Aligned_cols=72 Identities=21% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222---------2---100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~ 164 (264)
..+|=-|.++| |+-++|+.+ .+++|..++.+.+.++-..+.....+. ++.++..|+-+. . -++
T Consensus 7 KvalITGas~G-IG~a~A~~la~~G~~V~l~~R~~~~l~~~~~e~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 83 (241)
T PRK07454 7 PTALITGASRG-IGKATALAFAKAGWDLALVARSQDALEALAEELRSTGV--KVAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CEEEECCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 88999175878-99999999998799899998999999999999996599--2899995189999999999999997599
Q ss_pred HHHHHHCCH
Q ss_conf 233320113
Q gi|254780875|r 165 FDVIVSNPP 173 (264)
Q Consensus 165 fD~IvsNPP 173 (264)
.|++|.|-=
T Consensus 84 iDiLVnNAG 92 (241)
T PRK07454 84 PSVLINNAG 92 (241)
T ss_pred CCEEEECCC
T ss_conf 889998898
No 315
>KOG2782 consensus
Probab=66.23 E-value=2.2 Score=22.95 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 5122356555310123321101246860566421421123312222333210013332220024442011
Q gi|254780875|r 73 EPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAV 142 (264)
Q Consensus 73 IPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~ 142 (264)
.|-|---.+++.++..+ ...+...++|.--|+|--.-++.+..+.+++++.|.+|-|-++|+--..
T Consensus 23 ~~~~HVPVm~devl~~l----spv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782 23 VPSSHVPVMLDEVLDIL----SPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred CCCCCCCEEHHHHHHHC----CCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 55567754566589872----7778864788750577420788874727664000458689999987557
No 316
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=66.05 E-value=11 Score=18.38 Aligned_cols=121 Identities=22% Similarity=0.240 Sum_probs=64.2
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC-----CCCC-CCCCCCCCCCC-C----CHHH-
Q ss_conf 605664214211233122223332100133322200244420110001-----2222-22222222222-1----0023-
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGV-----SERF-DTLQSDWFSSV-E----GLFD- 166 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~-----~~~i-~~~~~d~~~~~-~----~~fD- 166 (264)
.++-=+|-|-=-++++.+....+.+|+|+||++..++.-+. ....+ +..+ +...+.-|... + ...|
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~--G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR--GESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHC--CCCEEECCCHHHHHHHHHHCCCCEEECCHHHCCCCCE
T ss_conf 28999824644578899998769955757578899888757--8642546868899999986397157568556254888
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--CCCHHHHHHHHHHH
Q ss_conf 3320113332100122111112357543321011232102568999998537887899981--76679999999997
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--GYNQKVDVVRIFES 241 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g~~q~~~v~~ll~~ 241 (264)
+|+|-|-++.. ..||.+ .+.+.-.+....+|++|-.+++|- .+.-.+++...+.+
T Consensus 88 ~iI~VPTPl~~-----------~~~pDl---------s~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 88 FIICVPTPLKK-----------YREPDL---------SYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred EEEEECCCCCC-----------CCCCCH---------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99993577678-----------999884---------8999999999975677888999647899857888999985
No 317
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.99 E-value=1.1 Score=24.89 Aligned_cols=72 Identities=22% Similarity=0.145 Sum_probs=44.4
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222---------2---1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~f 165 (264)
.+|=-|+++| |+.++++.+ .+++|+.+|.+.+.++-+.+-....+. ++.+++.|+-+. . -++.
T Consensus 6 ~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 82 (258)
T PRK12429 6 TALVTGAASG-IGLEIALALAKEGAKVVIADLNDEAAAKAAEAIKKAGG--KAIGVAMDVTDEEAINAGIDKVVETFGGV 82 (258)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8999488758-99999999998799999997988999999999984499--18999835899999999999999982997
Q ss_pred HHHHHCCHH
Q ss_conf 333201133
Q gi|254780875|r 166 DVIVSNPPY 174 (264)
Q Consensus 166 D~IvsNPPY 174 (264)
|++|.|--+
T Consensus 83 DiLVnnAG~ 91 (258)
T PRK12429 83 DILVNNAGI 91 (258)
T ss_pred CEEEECCCC
T ss_conf 099989988
No 318
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.61 E-value=1.3 Score=24.41 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=49.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
++..+|=-|.++| |+-++|..+ .+++|..+|.+++.++-+.+-+...+.. +.++..|+-+. . -
T Consensus 5 ~gKvalITGas~G-IG~aiA~~la~~Ga~V~l~~r~~~~l~~~~~~i~~~g~~--~~~~~~Dvtd~~~v~~~v~~~~~~~ 81 (238)
T PRK07666 5 QGKNALITGAGRG-IGRAVAIALAKEGVNVGLLARSEENLKAVAKEVEAEGVK--AVIATADVSDYEEVTTAIETLKNGL 81 (238)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9998999163778-999999999987998999989999999999999955992--7999930799999999999999981
Q ss_pred CHHHHHHHCCHH
Q ss_conf 002333201133
Q gi|254780875|r 163 GLFDVIVSNPPY 174 (264)
Q Consensus 163 ~~fD~IvsNPPY 174 (264)
++.|++|.|-=.
T Consensus 82 G~iDiLVNNAGi 93 (238)
T PRK07666 82 GSIDILINNAGI 93 (238)
T ss_pred CCCCEEEECCCC
T ss_conf 998789984745
No 319
>PRK06720 hypothetical protein; Provisional
Probab=65.15 E-value=1.7 Score=23.73 Aligned_cols=74 Identities=14% Similarity=-0.020 Sum_probs=48.8
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222------------210
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~ 163 (264)
...++=-|.++| |+-++|..+ .+++|..+|++++.++-+.+-+...+. ++.++..|+-+. -.+
T Consensus 16 gKvalITGa~~G-IG~a~A~~la~~Ga~Vvi~d~~~~~~~~~~~~i~~~g~--~a~~~~~Dvs~~~~v~~~i~~~~~~~g 92 (169)
T PRK06720 16 GKVAIVTGGGIG-IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGG--EALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999897548-99999999998699899952763659999999997499--537897588999999999999999759
Q ss_pred HHHHHHHCCHH
Q ss_conf 02333201133
Q gi|254780875|r 164 LFDVIVSNPPY 174 (264)
Q Consensus 164 ~fD~IvsNPPY 174 (264)
+.|++|.|-=.
T Consensus 93 ~iDiLvNNAGI 103 (169)
T PRK06720 93 RIDMLFQNAGL 103 (169)
T ss_pred CCCEEEECCCC
T ss_conf 89989989421
No 320
>PRK05855 short chain dehydrogenase; Validated
Probab=64.59 E-value=1.5 Score=24.02 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=74.8
Q ss_pred HHCCCCHHHHCCCEEEE---------------EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC---------------
Q ss_conf 97498376853631442---------------376775046205122356555310123321101---------------
Q gi|254780875|r 45 SLKHESIHRILGWRDFY---------------NVRLTLSSDTFEPRPETELLVDSALAFSLPRIE--------------- 94 (264)
Q Consensus 45 r~~g~Pl~YIlg~~~F~---------------~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~--------------- 94 (264)
|....|+|-|+...+-+ -..-.++-+=-+|+.+-|.+..++-++.- ..+
T Consensus 230 r~~~vPVq~iv~~~D~~v~p~l~~~~~~w~~~l~rr~i~a~HW~p~s~P~~iA~~~~efv~-~~~~~~~~~~~~~~~~~~ 308 (582)
T PRK05855 230 RYTHVPVQLIVPTGDPYVRPALYDDLARWVPRLWRREIKAGHWLPMSHPQVLAAAVAELID-AVEGGPPPRALLRARVGR 308 (582)
T ss_pred CCCCCCEEEEEECCCCCCCHHHHCCHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCHHHHCCCCCC
T ss_conf 7788877997517887769777441444178608986037853766798999999999998-635788986673354589
Q ss_pred ---CCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------
Q ss_conf ---2468605664214211233122223--33210013332220024442011000122222222222222---------
Q gi|254780875|r 95 ---KRDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--------- 160 (264)
Q Consensus 95 ---~~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--------- 160 (264)
.-+...++=-|.||| |+-++|..+ .+++|..+|+++++++-+.+-+...|.. ...+..|+-+.
T Consensus 309 ~~~rFsGKvAvVTGA~sG-IGrA~A~~fA~~GA~Vvl~Dr~~~~l~eta~ei~~~G~~--a~~~~~DVtd~~av~al~~~ 385 (582)
T PRK05855 309 PRGRFGGKLVVVTGAGSG-IGRATALAFAREGAEVVASDIDEAAAERTAALIRAAGAV--AHAYRVDVSDADAMEALAEW 385 (582)
T ss_pred CCCCCCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCE--EEEEECCCCCHHHHHHHHHH
T ss_conf 988749958999587578-999999999977999999607999999999999951984--89997558999999999999
Q ss_pred ---CCCHHHHHHHCCH
Q ss_conf ---2100233320113
Q gi|254780875|r 161 ---VEGLFDVIVSNPP 173 (264)
Q Consensus 161 ---~~~~fD~IvsNPP 173 (264)
--+..|++|.|-=
T Consensus 386 v~~~~G~iDILVNNAG 401 (582)
T PRK05855 386 VGAEHGVPDIVVNNAG 401 (582)
T ss_pred HHHHCCCCCEEEECCC
T ss_conf 9997699999998987
No 321
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.22 E-value=1.5 Score=24.11 Aligned_cols=85 Identities=18% Similarity=0.122 Sum_probs=53.8
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
-+...+|=-|.++| |+.++|+++ .+++|+.+|.+++.++-+.+..+..+. ++..+..|+-+. .
T Consensus 8 l~gK~alVTG~s~G-IG~aiA~~la~~Ga~Vii~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~ 84 (265)
T PRK07097 8 LKGKIALITGASYG-IGFAIAKAYAEAGATIVFNDIKQELVDKGLAAYRELGI--EAHGYVCDVTDEDGIQAMVAQIEKE 84 (265)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 89998999585768-99999999998699999995998999999999995499--1799993289999999999999998
Q ss_pred CCHHHHHHHCCHHHHHHCCCCC
Q ss_conf 1002333201133321001221
Q gi|254780875|r 162 EGLFDVIVSNPPYIESVIVDCL 183 (264)
Q Consensus 162 ~~~fD~IvsNPPYI~~~~~~~l 183 (264)
-++.|++|.|-=......+.++
T Consensus 85 ~g~iDiLVnNAG~~~~~~~~~~ 106 (265)
T PRK07097 85 VGVIDILVNNAGIIRRIPMLEM 106 (265)
T ss_pred CCCCCEEEECCCCCCCCCHHHC
T ss_conf 2999899989989999882659
No 322
>PRK06940 short chain dehydrogenase; Provisional
Probab=63.80 E-value=1.3 Score=24.42 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 05664214211233122223-33210013332220024442011000122222222222
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDW 157 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~ 157 (264)
+|+=+| |+|-|+.++|+.+ .+++|+.+|.+++.++-+.+.....+. ++..+..|+
T Consensus 6 kV~v~t-Ga~GIG~aiA~~la~Ga~vvi~~~~~~~l~~~~~~l~~~g~--~~~~~~~Dv 61 (277)
T PRK06940 6 EVVVVI-GAGGMGQAIARRVGSGKTVLLADYNEENLQAVARTLREAGF--DVITQQVDV 61 (277)
T ss_pred CEEEEC-CCCHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCC
T ss_conf 299997-81699999999998199899998988999999999872288--299998257
No 323
>KOG0024 consensus
Probab=63.76 E-value=2.4 Score=22.75 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=39.6
Q ss_pred CCCCCCCCCEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 1012468605664214-21123312222333210013332220024442
Q gi|254780875|r 92 RIEKRDVVRILDLGTG-TGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~G-sG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
+.+-+...++|=+|+| .|...+..|+.+...+|+.+|.++..+++|++
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred HCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
T ss_conf 2476668868997676899999999987498728996067779999998
No 324
>PRK09186 flagellin modification protein A; Provisional
Probab=63.11 E-value=1.6 Score=23.88 Aligned_cols=71 Identities=23% Similarity=0.118 Sum_probs=45.7
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222---------2---1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~f 165 (264)
.++=-|.++| |+.++++.+ .+++|+.+|.+.+.++-+.+.....+ ..++.++..|+-+. . .++.
T Consensus 6 ~~lVTGgs~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~-~~~v~~~~~Dvt~~~~v~~~~~~~~~~~g~i 83 (255)
T PRK09186 6 TILITGAGGL-IGSALVKAILEAGGIVIAADINKEALNKLLESLGTIE-KTKLTLVELDITDQESLEEFLSKSQERYGKI 83 (255)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8999795868-9999999999879999999698899999999998705-9807999846899999999999999981997
Q ss_pred HHHHHCC
Q ss_conf 3332011
Q gi|254780875|r 166 DVIVSNP 172 (264)
Q Consensus 166 D~IvsNP 172 (264)
|++|.|-
T Consensus 84 d~lVnnA 90 (255)
T PRK09186 84 DGAVNCA 90 (255)
T ss_pred CEEEECC
T ss_conf 7899757
No 325
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=63.09 E-value=1.7 Score=23.71 Aligned_cols=75 Identities=20% Similarity=0.119 Sum_probs=50.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------------
Q ss_conf 468605664214211233122223--332100133322200244420110001222222222222222------------
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV------------ 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------------ 161 (264)
-++..+|=-|.++| |+.++|+.+ .+++|..+|.+++.++-+.+.....+.+ +.++..|+-+.-
T Consensus 10 L~gKvalVTG~s~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~--~~~~~~Dv~~~~~v~~~v~~~~~~ 86 (259)
T PRK08213 10 LTGKTALVTGGSRG-LGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGID--ALWLAADVADEADIERLAEETLER 86 (259)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99998999487768-999999999986999999979889999999999954995--899982689999999999999998
Q ss_pred CCHHHHHHHCCH
Q ss_conf 100233320113
Q gi|254780875|r 162 EGLFDVIVSNPP 173 (264)
Q Consensus 162 ~~~fD~IvsNPP 173 (264)
-++.|++|.|--
T Consensus 87 ~G~iDiLVNNAG 98 (259)
T PRK08213 87 FGHIDILVNNAG 98 (259)
T ss_pred HCCCCEEEECCC
T ss_conf 399989998997
No 326
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=62.16 E-value=3.3 Score=21.77 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=49.5
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCCCCCC-CCCCCCCC
Q ss_conf 01246860566421421123312222333-210013332220024442011000122-22222222
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESPF-FKGVGVDISCKALEIAKSNAVTNGVSE-RFDTLQSD 156 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~~-~~v~~~Dis~~al~~A~~N~~~~~~~~-~i~~~~~d 156 (264)
+..++...-+|.=-|-|.-+-.|...++. .+.+|+|.++.|++.|++=...+. + ++...++.
T Consensus 23 L~ik~~G~YiD~T~G~GGHS~~iL~ql~~~g~L~~iD~D~~ai~~A~~~l~~~~--~~~~~~~~~~ 86 (323)
T TIGR00006 23 LNIKPDGIYIDCTLGRGGHSKAILEQLSEKGRLIGIDRDKQAIAFAKELLKDFE--GRRVVLIHDN 86 (323)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHC--CCEEEEECCC
T ss_conf 654888736540258517899998523999507887479899999999853210--6757885076
No 327
>PRK06125 short chain dehydrogenase; Provisional
Probab=62.02 E-value=1.8 Score=23.50 Aligned_cols=119 Identities=16% Similarity=0.093 Sum_probs=65.1
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-----C---CCHHH
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222-----2---10023
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-----V---EGLFD 166 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-----~---~~~fD 166 (264)
++.++|=-|.++| |+.++|+.+ .+++|+.+|.+.+.++-+.+.....+- .++.++..|+-+. + -+..|
T Consensus 6 ~gK~alITG~s~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~g~iD 83 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLVLAARDADALAALAADLRAAHG-VDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 9998999687768-99999999998799899997988999999999987009-866999888999999999999858998
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CEEE
Q ss_conf 332011333210012211111235754332101123210256899999853788--7899
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKD--GLCS 224 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~--G~l~ 224 (264)
++|.|--..+...+.+++.+. |+-...+ -+.-.-.+.+.+..+|+.. |.++
T Consensus 84 iLVnnAG~~~~~~~~~~~~~~--w~~~~~v-----nl~~~~~l~~~~~p~m~~~~~G~Ii 136 (259)
T PRK06125 84 ILVNNAGAIPGGSLDDVDDAA--WRAGWEL-----KVFGYINLTRLFYPRMKARGSGVIV 136 (259)
T ss_pred EEEECCCCCCCCCCCCCCHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999768778998645499999--9999998-----6343788999999976534981999
No 328
>PRK06227 consensus
Probab=61.55 E-value=1.8 Score=23.57 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=50.4
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222---------2---100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~ 164 (264)
..+|=-|.++| |+.++|+.+ .+++|...|.++++...+.+.....+.+ +.++++|+-+. . -++
T Consensus 6 KvalVTGas~G-IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~--~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 82 (256)
T PRK06227 6 KVAIVTGGGQG-IGAAIAQTFAENGAKVVIADIDEEAGLEREEMLRSNGLD--ALFVKTDVSDEEDVKNMVRKTVERYGG 82 (256)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88999586688-999999999987999999969888999999999955991--899981689999999999999998299
Q ss_pred HHHHHHCCHHHHHHCCCCCC
Q ss_conf 23332011333210012211
Q gi|254780875|r 165 FDVIVSNPPYIESVIVDCLG 184 (264)
Q Consensus 165 fD~IvsNPPYI~~~~~~~l~ 184 (264)
.|++|.|-=......+..++
T Consensus 83 iDiLVNNAGi~~~~~~~~~~ 102 (256)
T PRK06227 83 IDILINNAGIFSGKSIFERT 102 (256)
T ss_pred CCEEEECCCCCCCCCHHHCC
T ss_conf 97999899899998903498
No 329
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=61.38 E-value=9.3 Score=18.85 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=49.3
Q ss_pred HHHHH-HHCCHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---CCCCCEEEEE--ECCC--H---
Q ss_conf 02333-2011333210-01221111123575433210112321025689999985---3788789998--1766--7---
Q gi|254780875|r 164 LFDVI-VSNPPYIESV-IVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRH---LNKDGLCSVE--IGYN--Q--- 231 (264)
Q Consensus 164 ~fD~I-vsNPPYI~~~-~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~---L~~~G~l~lE--ig~~--q--- 231 (264)
-||+= +-||=|++.- ....++++|.+| +...+.--+|+.++......+ ....|.-++- ||.+ |
T Consensus 182 VfDvRfLpNP~y~~~LR~lTG~D~~V~~y-----v~~~~~~~~f~~~i~~ll~~~lp~y~~egksyltIaiGCTGGqHRS 256 (284)
T pfam03668 182 VFDVRFLPNPHWDPELRPLTGLDKPVADY-----VLHHTEVAEFIESTRRLLSLWLPMYEREGKSYLTIAIGCTGGKHRS 256 (284)
T ss_pred EEEECCCCCCCCCHHHCCCCCCCHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH
T ss_conf 55613578998874445689998589999-----9759109999999999999999989984998799997688986279
Q ss_pred ---HHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf ---999999999789805899805689
Q gi|254780875|r 232 ---KVDVVRIFESRKLFLVNAFKDYGG 255 (264)
Q Consensus 232 ---~~~v~~ll~~~gf~~v~~~kD~~g 255 (264)
++.+.+.|++.|+.....++|+.-
T Consensus 257 V~iae~L~~~l~~~~~~v~v~HRdl~r 283 (284)
T pfam03668 257 VYIAEQLADYFRSDGKTVVALHRDLER 283 (284)
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 999999999998479966486677888
No 330
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.11 E-value=1.6 Score=23.90 Aligned_cols=81 Identities=19% Similarity=0.086 Sum_probs=47.4
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCC-CCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 68605664214211233122223--332100133322-20024442011000122222222222222---------2---
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISC-KALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~-~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
++..++=.|.++| |+.++|+++ .+++|+.++.+. +.++.+++.....+ .++.++..|+-+. .
T Consensus 6 kgK~~lITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (250)
T PRK12825 6 SGRVALVTGAARG-IGRAIALRLAAAGADVIVHPPSDEAAAEETVAAVEALG--RRAQAVQADVTDAAALEAAVEELVER 82 (250)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 9788999389558-99999999998799899997988789999999998539--94899994189999999999999997
Q ss_pred CCHHHHHHHCCHHHHHHCC
Q ss_conf 1002333201133321001
Q gi|254780875|r 162 EGLFDVIVSNPPYIESVIV 180 (264)
Q Consensus 162 ~~~fD~IvsNPPYI~~~~~ 180 (264)
.++.|++|.|.-......+
T Consensus 83 ~g~iDilInnAg~~~~~~~ 101 (250)
T PRK12825 83 FGAIDILVNNAGITGDGRL 101 (250)
T ss_pred CCCCCEEEECCCCCCCCCH
T ss_conf 6999899989988999890
No 331
>PRK07890 short chain dehydrogenase; Provisional
Probab=60.67 E-value=2.5 Score=22.61 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=61.1
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222---------2---1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~f 165 (264)
.+|=-|.++| |+.++++.+ .+++|+..|.+.+.++-+.+.....+- +..++.+|+-+. . -++.
T Consensus 7 ~alVTG~s~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~~~~~v~~~~~~fG~i 83 (258)
T PRK07890 7 VVVVSGVGPG-LGTTLAVRAAREGADVVLAARTAERLDEVAKQIDDLGR--RALAVVTDITDEAQVANLVDAALERFGRV 83 (258)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8999685658-99999999998799899997989999999999996499--58999816999999999999999984999
Q ss_pred HHHHHCCHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 333201133321-001221111123575433210112321025689999985378-878999
Q gi|254780875|r 166 DVIVSNPPYIES-VIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNK-DGLCSV 225 (264)
Q Consensus 166 D~IvsNPPYI~~-~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~-~G~l~l 225 (264)
|++|.|--+.+. ..+..++.+ .|+- .+.. .+.-.-.+.+.+..+|++ +|.++.
T Consensus 84 DiLVnnAg~~~~~~~~~~~~~e--~~~~--~~~~---nl~~~~~~~k~~~p~m~~~~G~IVn 138 (258)
T PRK07890 84 DVLVNNAFRVPSMKPLAGADFD--HWRD--VIET---NVLGTLRLTQAFTPALAESGGSVVM 138 (258)
T ss_pred CEEEECCCCCCCCCCHHHCCHH--HHHH--HHHH---HHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 8999868667899980029999--9999--9998---7599999999889999976985999
No 332
>pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase. This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine.
Probab=59.94 E-value=2.1 Score=23.07 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=17.0
Q ss_pred CCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 24686056642142112331222
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLK 117 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~ 117 (264)
-.++.+|.|+||.||.=++....
T Consensus 14 ~p~~~~IADlGCSsGpNtl~~vs 36 (331)
T pfam03492 14 FPNSIKIADLGCSSGPNTFLAVS 36 (331)
T ss_pred CCCCEEEEEECCCCCHHHHHHHH
T ss_conf 99855999817999752899999
No 333
>PRK05854 short chain dehydrogenase; Provisional
Probab=59.79 E-value=2.3 Score=22.83 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH-CCCCHHHHCCCEE
Q ss_conf 99999999999897-4983768536314
Q gi|254780875|r 33 RQRFFLTNAIVRSL-KHESIHRILGWRD 59 (264)
Q Consensus 33 ~~~~~l~~~i~rr~-~g~Pl~YIlg~~~ 59 (264)
...+...+...+.. ++.||..++..+-
T Consensus 75 s~l~sVr~~a~~~~~~~~~lDiLInNAG 102 (314)
T PRK05854 75 SSLASVAALGEQLLAEGRPIHLLINNAG 102 (314)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 1689999999987530687527872676
No 334
>PRK09291 short chain dehydrogenase; Provisional
Probab=59.66 E-value=1.9 Score=23.44 Aligned_cols=15 Identities=0% Similarity=-0.237 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCCHH
Q ss_conf 321001333222002
Q gi|254780875|r 121 FFKGVGVDISCKALE 135 (264)
Q Consensus 121 ~~~v~~~Dis~~al~ 135 (264)
+++|++++.+...++
T Consensus 26 G~~Vi~~~r~~~~l~ 40 (257)
T PRK09291 26 GHRVIAGVQIAPQVT 40 (257)
T ss_pred CCEEEEEECCHHHHH
T ss_conf 998999968789999
No 335
>PRK10458 DNA cytosine methylase; Provisional
Probab=59.54 E-value=1.8 Score=23.48 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=49.6
Q ss_pred HHHHHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99998974983768536314423767750462051223565553101233211012468605664214211233122223
Q gi|254780875|r 40 NAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES 119 (264)
Q Consensus 40 ~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~ 119 (264)
+.++|-.+|.+-++-+..+++--+ ..|.|.| .........+++||.+|-|-+-+.+-. .
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--------------~~~~~~~~f~FIDLFAGIGG~r~~~e~-~ 111 (470)
T PRK10458 53 AILKRWLANDSAWHRLSEAEFAHL------QTLLPKP--------------PAHHPHYAFRFIDLFAGIGGIRRGFEA-I 111 (470)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHH------HHHCCCC--------------CCCCCCCCCEEEEECCCCCHHHHHHHH-C
T ss_conf 999999728986221578899999------9857999--------------777888886676335775567799997-3
Q ss_pred CCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 3321001333222002444201
Q gi|254780875|r 120 PFFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 120 ~~~~v~~~Dis~~al~~A~~N~ 141 (264)
.+--|..+|+++.|.+.=+.|.
T Consensus 112 gg~CVfssE~dk~a~~tY~an~ 133 (470)
T PRK10458 112 GGQCVFTSEWNKHAVRTYKANW 133 (470)
T ss_pred CCEEEEEECCCHHHHHHHHHHC
T ss_conf 9979998506899999999965
No 336
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=59.31 E-value=2.3 Score=22.80 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=48.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
-++..+|=-|.++| |+.++|+.+ .+++|+..|++++.++-+.+.....+.. +.+++.|+-+. .
T Consensus 7 L~gK~alVTG~~~G-IG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~--~~~~~~Dvtd~~~v~~~v~~~~~~ 83 (254)
T PRK08085 7 LAGKNILITGSAQG-IGFLLATGLAEYGAEIIINDITAERAEKAVAKLRQEGIK--AHAAAFNVTHKQEIEAAIEHIEKD 83 (254)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE--EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99998999685678-999999999986999999969889999999999844981--899982689999999999999998
Q ss_pred CCHHHHHHHCCH
Q ss_conf 100233320113
Q gi|254780875|r 162 EGLFDVIVSNPP 173 (264)
Q Consensus 162 ~~~fD~IvsNPP 173 (264)
-++.|++|.|-=
T Consensus 84 ~G~iDilVnNAG 95 (254)
T PRK08085 84 IGPIDVLINNAG 95 (254)
T ss_pred HCCCCEEEECCC
T ss_conf 399869998986
No 337
>PRK09072 short chain dehydrogenase; Provisional
Probab=59.26 E-value=2.2 Score=22.94 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHH
Q ss_conf 605664214211233122223--3321001333222002444
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~ 138 (264)
.++|=-|++|| |+.++|+++ .+++|+.++.+++.++-..
T Consensus 6 K~vlITGassG-IG~a~A~~la~~G~~vil~~R~~~~L~~~~ 46 (262)
T PRK09072 6 KRVLLTGASGG-IGEALAEALCAAGARLLLVGRNAEKLEALA 46 (262)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 88999486239-999999999987998999989899999999
No 338
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=59.04 E-value=3.4 Score=21.71 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=45.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCC-------CCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 7677504620512235655531012-------332110124686056642142-11233122223332100133322200
Q gi|254780875|r 63 VRLTLSSDTFEPRPETELLVDSALA-------FSLPRIEKRDVVRILDLGTGT-GAVCLALLKESPFFKGVGVDISCKAL 134 (264)
Q Consensus 63 ~~f~v~~~vLIPRpeTE~lv~~~l~-------~~~~~~~~~~~~~vLDlG~Gs-G~i~i~la~~~~~~~v~~~Dis~~al 134 (264)
.-+.|...-++|-|+.--+-+.++- .........++-++|=+|+|+ |..++.+|+......|+++|.|++-+
T Consensus 119 ey~~v~~~~~~~iP~~~~~e~aa~~ep~~~~~~a~~~~~~~~g~~vlV~GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl 198 (347)
T PRK10309 119 EYIVVKRKNLFALPTDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKL 198 (347)
T ss_pred CEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 04785489866787200245667676677776777650588898699989983899999999985997699992899999
Q ss_pred HHHHHCC
Q ss_conf 2444201
Q gi|254780875|r 135 EIAKSNA 141 (264)
Q Consensus 135 ~~A~~N~ 141 (264)
+.|++.-
T Consensus 199 ~~a~~lG 205 (347)
T PRK10309 199 ALAKSLG 205 (347)
T ss_pred HHHHHCC
T ss_conf 9999729
No 339
>PRK08267 short chain dehydrogenase; Provisional
Probab=58.92 E-value=1.9 Score=23.42 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=17.5
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHH
Q ss_conf 5664214211233122223--3321001333222002444
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~ 138 (264)
+|=-|.+|| |+.++|+.+ .+++|..+|.+++.++-..
T Consensus 4 vlITGassG-IG~a~A~~~a~~G~~V~~~~r~~~~l~~~~ 42 (258)
T PRK08267 4 IFITGAASG-IGRATARLFAARGWRVGAYDINEDGLAALA 42 (258)
T ss_pred EEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 999072268-999999999987999999988899999999
No 340
>PRK08324 short chain dehydrogenase; Validated
Probab=58.91 E-value=2.4 Score=22.76 Aligned_cols=116 Identities=20% Similarity=0.104 Sum_probs=63.3
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222---------2---1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~f 165 (264)
+|.=+--|+|-|+.++|+.+ .+++|+.+|+++++++-+.+..... .++..+..|+-+. . -|..
T Consensus 422 KVALVTGga~GIG~A~A~~fa~eGA~Vvl~D~~~~~l~~~a~el~~~---~~~~~~~~DVtd~~~v~~~v~~~~~~fGgI 498 (676)
T PRK08324 422 KVALVTGAAGGIGLATAKRLAAEGACVVLADIDEEAAEAAAAELGGR---DRALGVACDVTDEAAVQAAFEEAALAFGGV 498 (676)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 87999479881629999999987998999958889999999997079---947999806899999999999999985998
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCEEEE
Q ss_conf 333201133321001221111123575433210112321025689999985378---878999
Q gi|254780875|r 166 DVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNK---DGLCSV 225 (264)
Q Consensus 166 D~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~---~G~l~l 225 (264)
|++|+|=-......+..++.+ .|+-...+. -.| .-.+.+.+..+|+. +|.+++
T Consensus 499 DiLVnNAGi~~~~~~~e~s~e--~w~~~~~vN--l~g---~f~~~r~a~p~M~~qg~GG~IV~ 554 (676)
T PRK08324 499 DIVVSNAGIALSGPIGETSDE--LWRRSFEVN--FTG---HFLVAREAVRIMKAQGTGGNLVF 554 (676)
T ss_pred CEEEECCCCCCCCCHHHCCHH--HHHHHHHHH--HHH---HHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 889976777899882659999--999999886--099---99999999999997699919999
No 341
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.91 E-value=1.9 Score=23.36 Aligned_cols=85 Identities=18% Similarity=0.026 Sum_probs=49.6
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCC-CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 8605664214211233122223--3321001-3332220024442011000122222222222222---------2---1
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVG-VDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~-~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
+..+|=.|.++| |+.++|+.+ .+++|+. .+.+++.++-..+....++. ++.+++.|+-+. . .
T Consensus 5 gK~vlITGgs~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTGASGG-IGRAIAELLAKEGAKVVIAYDKNEEAANELLEEIKEVGG--DAIAVKADVSSEDDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 988999378458-999999999987998999817998999999999996399--08999835899999999999999980
Q ss_pred CHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 00233320113332100122111
Q gi|254780875|r 163 GLFDVIVSNPPYIESVIVDCLGL 185 (264)
Q Consensus 163 ~~fD~IvsNPPYI~~~~~~~l~~ 185 (264)
++.|++|.|--......+.+++.
T Consensus 82 g~iD~lVnnAg~~~~~~~~~~~~ 104 (247)
T PRK05565 82 GKIDILVNNAGISKFGLVTDMTD 104 (247)
T ss_pred CCCCEEEECCCCCCCCCHHHCCH
T ss_conf 99849998998789999155999
No 342
>TIGR01158 SUI1_rel translation initation factor SUI1, putative; InterPro: IPR005872 This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.; GO: 0003743 translation initiation factor activity, 0006412 translation.
Probab=58.36 E-value=15 Score=17.49 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHHHHCCCCE
Q ss_conf 0256899999853788789---99817667999999999789805
Q gi|254780875|r 205 HYRTIADGVSRHLNKDGLC---SVEIGYNQKVDVVRIFESRKLFL 246 (264)
Q Consensus 205 ~~~~ii~~~~~~L~~~G~l---~lEig~~q~~~v~~ll~~~gf~~ 246 (264)
.++.+.+..++.+.-||.+ .+|+-=+|.+.|.++|.+.||..
T Consensus 62 ~L~~LAk~LK~~cacGGTvKdG~IElQGdhr~~~~~~L~~~GF~~ 106 (111)
T TIGR01158 62 DLKELAKELKSKCACGGTVKDGVIELQGDHRERVKDLLLKKGFKV 106 (111)
T ss_pred HHHHHHHHHHHHHCCCCCEECCEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 899999987788468974036816860552788999999658960
No 343
>PRK07814 short chain dehydrogenase; Provisional
Probab=57.98 E-value=2.5 Score=22.64 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=46.6
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------------CC
Q ss_conf 8605664214211233122223--332100133322200244420110001222222222222222------------10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV------------EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------------~~ 163 (264)
+..+|=-|.++| |+-++|+.+ .+++|+.++.+++.++-+.+.....+. ++.++..|+.+.- -+
T Consensus 10 gKvalITGgs~G-IG~aia~~la~~Ga~V~i~~~~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~v~~~~~~~G 86 (263)
T PRK07814 10 GQVAVVTGAGRG-LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR--RAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 998999589668-99999999998799899996989999999999985299--289998158999999999999999829
Q ss_pred HHHHHHHCCHH
Q ss_conf 02333201133
Q gi|254780875|r 164 LFDVIVSNPPY 174 (264)
Q Consensus 164 ~fD~IvsNPPY 174 (264)
+.|++|.|=-+
T Consensus 87 ~iDiLVnNAg~ 97 (263)
T PRK07814 87 RLDIVVNNVGG 97 (263)
T ss_pred CCCEEEECCCC
T ss_conf 98899989866
No 344
>PRK06545 prephenate dehydrogenase; Validated
Probab=57.01 E-value=3.2 Score=21.90 Aligned_cols=19 Identities=26% Similarity=0.010 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCHHHHHH
Q ss_conf 3210013332220024442
Q gi|254780875|r 121 FFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 121 ~~~v~~~Dis~~al~~A~~ 139 (264)
..+++++|.++..++.|.+
T Consensus 25 ~~~i~~~d~~~~~l~~A~~ 43 (357)
T PRK06545 25 DVFIIGYDPSGAQLARALG 43 (357)
T ss_pred CEEEEEECCCHHHHHHHHH
T ss_conf 7699996699999999986
No 345
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.70 E-value=2.9 Score=22.16 Aligned_cols=114 Identities=16% Similarity=0.077 Sum_probs=62.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222------------210
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~ 163 (264)
+.++|=-|.++| |+.++|+.+ .+++|+.++.+++.++-+.+.....+ ++.+...|+.+. ..+
T Consensus 5 gK~~lVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~Dvs~~~~v~~~~~~~~~~~g 80 (238)
T PRK05786 5 GKNVLIVGVSPG-LGYAVAYFALREGASVYAFARSEEKLKEIKKTLAKYG---NVIYVVGDVSKLEGAREAAEKAAKVFG 80 (238)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC---CEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 988999289878-9999999999879999999698899999999874359---779997578999999999999999839
Q ss_pred HHHHHHHCCH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0233320113-3321001221111123575433210112321025689999985378878999
Q gi|254780875|r 164 LFDVIVSNPP-YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 164 ~fD~IvsNPP-YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
..|.+|.|-- |.. ..... ...|+-... . -+.-.-.+.+.+..+|+++|.+++
T Consensus 81 ~iD~lv~naG~~~~-~~~~~----~~~~~~~~~--~---nl~~~~~~~~~~~~~m~~g~~ii~ 133 (238)
T PRK05786 81 ALHGLVVTAGGYIE-DTVEE----LAGLEDMLN--N---HLKAPLYAVNASLPLLREGSSIVL 133 (238)
T ss_pred CCCEEEEECCCCCC-CCHHH----HHHHHHHHH--H---HHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 98879980575678-85231----899999999--9---858999999999997421677999
No 346
>PRK06198 short chain dehydrogenase; Provisional
Probab=56.69 E-value=2.3 Score=22.85 Aligned_cols=85 Identities=16% Similarity=0.012 Sum_probs=52.2
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCC-CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------C
Q ss_conf 68605664214211233122223--3321-0013332220024442011000122222222222222------------2
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFK-GVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------V 161 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~-v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~ 161 (264)
++..+|=-|.++| |+.++|+.+ .+++ |+..+.+.+.++.+.+.....+. ++.++++|+-+. .
T Consensus 5 ~gK~alVTGas~G-IG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (268)
T PRK06198 5 DGKIALVTGGTQG-LGAAIARLFAERGAAGLVICGRSAEKGEAKAAELEALGA--KAVFVQADLAKVEDCRAVVAAADEA 81 (268)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9988999585778-999999999987993899962988899999999995499--6799982689999999999999998
Q ss_pred CCHHHHHHHCCHHHHHHCCCCCC
Q ss_conf 10023332011333210012211
Q gi|254780875|r 162 EGLFDVIVSNPPYIESVIVDCLG 184 (264)
Q Consensus 162 ~~~fD~IvsNPPYI~~~~~~~l~ 184 (264)
.++.|++|.|--......+..++
T Consensus 82 fG~iDiLVNnAG~~~~~~~~~~~ 104 (268)
T PRK06198 82 FGRLDALVNAAGLTDRGTILDTS 104 (268)
T ss_pred HCCCCEEEECCCCCCCCCHHHCC
T ss_conf 39998999899789999826599
No 347
>PRK07576 short chain dehydrogenase; Provisional
Probab=56.45 E-value=2.3 Score=22.84 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=46.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
++..+|=.|.++ -|+.++|+.+ .+++|..+|.+++.++-+.+.....+. ++..+..|+-+. . -
T Consensus 7 ~gK~alVTGgs~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~ 83 (260)
T PRK07576 7 AGKNVFVVGGTS-GINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP--EALGVSADVRDYAAVEAAFAAIADEF 83 (260)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 899899958961-999999999998799999997988999999999995399--48999931899999999999999984
Q ss_pred CHHHHHHHC
Q ss_conf 002333201
Q gi|254780875|r 163 GLFDVIVSN 171 (264)
Q Consensus 163 ~~fD~IvsN 171 (264)
++.|++|.|
T Consensus 84 G~iDiLVnn 92 (260)
T PRK07576 84 GPIDVLVSG 92 (260)
T ss_pred CCCCEEEEC
T ss_conf 999899989
No 348
>PRK06482 short chain dehydrogenase; Provisional
Probab=56.41 E-value=1.5 Score=23.98 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=11.6
Q ss_pred CCCCCCCCEEEEECCCCCCCC
Q ss_conf 012468605664214211233
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCL 113 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i 113 (264)
...+...+|+-+++.+|..+.
T Consensus 122 mr~~~~G~IinisS~~g~~~~ 142 (276)
T PRK06482 122 LRRQGGGRIVQVSSEGGQIAY 142 (276)
T ss_pred HHHCCCCEEEEECCHHHCCCC
T ss_conf 575589779995452434689
No 349
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=56.30 E-value=5.2 Score=20.51 Aligned_cols=79 Identities=24% Similarity=0.224 Sum_probs=45.2
Q ss_pred EEEEECC-CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 6775046-205122356555310123321101246860566421421123312222333210013332220024442011
Q gi|254780875|r 64 RLTLSSD-TFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAV 142 (264)
Q Consensus 64 ~f~v~~~-vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~ 142 (264)
++.-++. +++||---=+ ..+++.+ .=.-++--+||+|+-+|--+-. |.+.-.-+|+|||++..-++..-+-
T Consensus 48 ~l~~~~~~tfVSRGG~KL--~~~L~~F---~~~vk~ki~lD~GsS~GGFtd~-aL~~GAk~VY~vDVG~~ql~~kLR~-- 119 (240)
T TIGR00478 48 ELVQNPLRTFVSRGGEKL--KEALEEF---EVDVKNKIVLDVGSSTGGFTDC-ALQKGAKEVYGVDVGYNQLAEKLRQ-- 119 (240)
T ss_pred EEECCCCCEEECCHHHHH--HHHCCCC---CEEECCEEEEEECCCCCHHHHH-HHHCCCCEEEEEEECCHHHHHHCCC--
T ss_conf 441477750005045899--9853543---3133786899705673048999-9870584677786032133432363--
Q ss_pred CCCCCCCCCCCC
Q ss_conf 000122222222
Q gi|254780875|r 143 TNGVSERFDTLQ 154 (264)
Q Consensus 143 ~~~~~~~i~~~~ 154 (264)
+.||.+++
T Consensus 120 ----D~Rv~~~e 127 (240)
T TIGR00478 120 ----DERVKVLE 127 (240)
T ss_pred ----CCEEEEEE
T ss_conf ----66268964
No 350
>PRK10083 putative dehydrogenase; Provisional
Probab=55.45 E-value=3.8 Score=21.37 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=32.9
Q ss_pred CCCCCCCCEEEEECCC-CCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 0124686056642142-11233122223-3321001333222002444201
Q gi|254780875|r 93 IEKRDVVRILDLGTGT-GAVCLALLKES-PFFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 93 ~~~~~~~~vLDlG~Gs-G~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~ 141 (264)
......-+++=+|+|+ |.+++.+++.. ....|+++|.++.-++.|++.-
T Consensus 156 ~~~~~g~~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~G 206 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALAKESG 206 (339)
T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCC
T ss_conf 189999889995876599999999998569978999379899999999719
No 351
>PRK07201 short chain dehydrogenase; Provisional
Probab=55.16 E-value=2.5 Score=22.62 Aligned_cols=123 Identities=13% Similarity=0.037 Sum_probs=69.4
Q ss_pred CCC---HHHHCCCEEEEEEEE---EEECCCCCHHHHH---HHHHHHHCCCCCCC------CCCCCCCCEEEEECCCCCCC
Q ss_conf 983---768536314423767---7504620512235---65553101233211------01246860566421421123
Q gi|254780875|r 48 HES---IHRILGWRDFYNVRL---TLSSDTFEPRPET---ELLVDSALAFSLPR------IEKRDVVRILDLGTGTGAVC 112 (264)
Q Consensus 48 g~P---l~YIlg~~~F~~~~f---~v~~~vLIPRpeT---E~lv~~~l~~~~~~------~~~~~~~~vLDlG~GsG~i~ 112 (264)
|.| +.|+-.-..|-..+. .-..++=.|+-|| .+|=-|.-.+.... ...-+...+|=-|.+|| |+
T Consensus 311 g~p~~~~~~~~~~~~~d~~~t~~~l~~~~i~~p~l~~ya~~lw~yw~~~ldp~~~~~~~~~g~L~GKvalITGASSG-IG 389 (663)
T PRK07201 311 GIPAEILDFVNYPTTFDSRETQEALKGTGIEVPRLASYAPRLWDYWERHLDPDRARDRDLRGPLEGKHVIITGASSG-IG 389 (663)
T ss_pred CCCHHHHHHCCCCCEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCH-HH
T ss_conf 99888986435886643265788760058888774551278888887526920013777688879947999388759-99
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHHHHHHHCCH
Q ss_conf 3122223--33210013332220024442011000122222222222222---------2---100233320113
Q gi|254780875|r 113 LALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLFDVIVSNPP 173 (264)
Q Consensus 113 i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~fD~IvsNPP 173 (264)
-++|.++ .+++|+.++.+.+.++-+.+.+...|.+ +..+..|+-+. . -+..|++|.|-=
T Consensus 390 ~A~A~~LA~~GA~Vvl~AR~~e~Le~v~~ei~~~Gg~--a~~~~~DVtd~~~v~~lv~~i~~~~G~IDVLVNNAG 462 (663)
T PRK07201 390 RATAIKVAEAGATVFALARDGEKLDELVAEIRARGGQ--AHAYTCDLTDSASVEHTVKDILGRHGHVDYLVNNAG 462 (663)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 9999999987998999989999999999999955991--899996279999999999999996799888998964
No 352
>PRK07326 short chain dehydrogenase; Provisional
Probab=55.13 E-value=2.4 Score=22.71 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=45.6
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
+..+|=-|.++| |+.++|+.+ .+++|+.++.+.+.++-+.+..... ++..+..|+-+. . -+
T Consensus 5 GKvalITGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~----~~~~~~~Dv~d~~~v~~~v~~~~~~~G 79 (235)
T PRK07326 5 GKAALVTGGSKG-IGFAVAEALAAAGYRVAICARDESELEAAAQELGKR----NVLGLACDVRDEADVRQAVDAHVEAFG 79 (235)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCC----CEEEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 989999382679-999999999987999999989889999999984239----869999638999999999999999829
Q ss_pred HHHHHHHCCHH
Q ss_conf 02333201133
Q gi|254780875|r 164 LFDVIVSNPPY 174 (264)
Q Consensus 164 ~fD~IvsNPPY 174 (264)
+.|++|.|--+
T Consensus 80 ~iDiLVNNAGi 90 (235)
T PRK07326 80 GLDILVNNAGV 90 (235)
T ss_pred CCEEEEECCCC
T ss_conf 96699988877
No 353
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=54.04 E-value=3.2 Score=21.92 Aligned_cols=70 Identities=19% Similarity=0.116 Sum_probs=41.8
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CC
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222------------21
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VE 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~ 162 (264)
++..+|=.|.++| |+.++++.+ .+++|+.+|.+++.++-..+. + ..++..+++|+.+. ..
T Consensus 5 ~gK~alVTGas~G-IG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~---~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 5 TGQVALITGGGSG-IGRALVERFLAEGARVAVLERSAEKCASLRQR---F--GDDVLVVEGDVTSYADNQRAVAQTVDRF 78 (263)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---H--CCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 7288999586679-99999999998799999997999999999998---1--8864687179999999999999999984
Q ss_pred CHHHHHHHCC
Q ss_conf 0023332011
Q gi|254780875|r 163 GLFDVIVSNP 172 (264)
Q Consensus 163 ~~fD~IvsNP 172 (264)
++.|++|.|-
T Consensus 79 G~iDiLVnnA 88 (263)
T PRK06200 79 GKLDCFVGNA 88 (263)
T ss_pred CCCCEEEECC
T ss_conf 9988899757
No 354
>PRK06949 short chain dehydrogenase; Provisional
Probab=54.00 E-value=2.7 Score=22.38 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
++..+|=-|+++| |+.++|..+ .+++|..+|.+.+.++-+.+..+..+.. ..++..|+-+. . -
T Consensus 8 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~--~~~~~~Dv~~~~~v~~~v~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTGASSG-LGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAEGGA--AHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9998999585779-999999999987999999969889999999999965992--8999826899999999999999984
Q ss_pred CHHHHHHHCCH
Q ss_conf 00233320113
Q gi|254780875|r 163 GLFDVIVSNPP 173 (264)
Q Consensus 163 ~~fD~IvsNPP 173 (264)
++.|++|.|--
T Consensus 85 G~iDiLVnnAG 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
T ss_conf 99989998998
No 355
>PRK06346 consensus
Probab=53.99 E-value=1.7 Score=23.70 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=45.9
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222------------21002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~~f 165 (264)
.++=-|.++| |+.++++.+ .+++|..+|.+++.++-+.+....++- ++.++.+|+-+. .-++.
T Consensus 7 v~lITGgs~G-IG~a~a~~la~~Ga~V~i~~r~~e~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~i~~~~~~fg~i 83 (251)
T PRK06346 7 VAIVTGAASG-MGKSIAELFAKEGAKVVVADLNLERAQKVVEEITSNGG--TAIAVVANVTKQEDIENMVDTAVDTYGTL 83 (251)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8999475788-99999999998799899997989999999999996399--08999778898999999999999982999
Q ss_pred HHHHHCCH
Q ss_conf 33320113
Q gi|254780875|r 166 DVIVSNPP 173 (264)
Q Consensus 166 D~IvsNPP 173 (264)
|++|.|-=
T Consensus 84 DiLVnNAg 91 (251)
T PRK06346 84 DILVNNAG 91 (251)
T ss_pred CEEEECCC
T ss_conf 79998998
No 356
>PRK06197 short chain dehydrogenase; Provisional
Probab=53.27 E-value=3.1 Score=22.03 Aligned_cols=32 Identities=13% Similarity=-0.072 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHH-CCCCHHHHCCCEEEE
Q ss_conf 89899999999999897-498376853631442
Q gi|254780875|r 30 LDDRQRFFLTNAIVRSL-KHESIHRILGWRDFY 61 (264)
Q Consensus 30 l~~~~~~~l~~~i~rr~-~g~Pl~YIlg~~~F~ 61 (264)
++-...+...+...+.. +..++..++..+--+
T Consensus 74 lDLssl~sV~~~a~~~~~~~~~lDvLinNAGi~ 106 (306)
T PRK06197 74 LDLASLASVRAAADALRAAYPRIDLLINNAGVM 106 (306)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 664307789999999996189876899778445
No 357
>PRK06128 oxidoreductase; Provisional
Probab=53.14 E-value=4.4 Score=20.98 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCC--HHHHHHCCCCCCC
Q ss_conf 2051223565553101233211012468605664214211233122223--33210013332220--0244420110001
Q gi|254780875|r 71 TFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKA--LEIAKSNAVTNGV 146 (264)
Q Consensus 71 vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~a--l~~A~~N~~~~~~ 146 (264)
-+.|||+... ..+. -..+.+...+|=-|.++| |+-++|..+ -+++|.-.+++.+. .+-+.+-++..|.
T Consensus 35 ~~~p~p~~~~------~~y~-g~grL~GKvAlVTGgssG-IG~AiA~~lA~eGA~Vvi~~~~~~~~~a~~~~~~i~~~G~ 106 (300)
T PRK06128 35 ELQPKADHGE------QSYK-GFGRLQGRKALITGADSG-IGRATAIAFAREGADIVLNYLPEEEQDAAEVVQLIQAEGR 106 (300)
T ss_pred CCCCCCCCCC------CCCC-CCCCCCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 7898998898------7898-888789995899173669-9999999999869999994299556789999999996598
Q ss_pred CCCCCCCCCCCCCC------C------CCHHHHHHHCCHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 22222222222222------2------1002333201133-321001221111123575433210112321025689999
Q gi|254780875|r 147 SERFDTLQSDWFSS------V------EGLFDVIVSNPPY-IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV 213 (264)
Q Consensus 147 ~~~i~~~~~d~~~~------~------~~~fD~IvsNPPY-I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~ 213 (264)
+...+.+|+-+. + -++.|++|.|-=+ .....+..+..+ .|+-.... --.| .-.+.+.+
T Consensus 107 --~a~~v~~Dvsd~~~~~~~v~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~~e--~w~~~~~v--Nl~g---~f~~~~aa 177 (300)
T PRK06128 107 --KAVAVPGDLKDEAFCRQLVERAVKELGGLDILVNIAGKQTARKDIADITTE--QFDATFKT--NVYA---MFWLCKAA 177 (300)
T ss_pred --EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHH--HHHHHHHH--CCHH---HHHHHHHH
T ss_conf --189997478999999999999999809999899899997789991779999--99999866--1158---99999999
Q ss_pred HHHCCCCCEEEE
Q ss_conf 985378878999
Q gi|254780875|r 214 SRHLNKDGLCSV 225 (264)
Q Consensus 214 ~~~L~~~G~l~l 225 (264)
..+|+++|.++.
T Consensus 178 ~p~m~~gGsIIn 189 (300)
T PRK06128 178 IPHLPPGASIIN 189 (300)
T ss_pred HHHHHCCCCEEE
T ss_conf 998753871478
No 358
>pfam11899 DUF3419 Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=53.02 E-value=3.7 Score=21.50 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCCC----CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 22222222222222----10023332011333210012211111235754332101123210256899999853788789
Q gi|254780875|r 148 ERFDTLQSDWFSSV----EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLC 223 (264)
Q Consensus 148 ~~i~~~~~d~~~~~----~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l 223 (264)
++++++++++.+.+ ++.+|.++- .+.++.++++ .+........+.++|||.+
T Consensus 272 dri~~ht~sl~e~L~~~~~~s~d~~vL------lD~~DWm~~~------------------~~~~~~~~i~r~a~pgaRV 327 (376)
T pfam11899 272 DRVRIHTDSLTEVLARLPAGSLTRAVL------LDAMDWMDPE------------------QLNALWREITRTAAPGARV 327 (376)
T ss_pred CCEEEEECCHHHHHHHCCCCCEEEEEE------CCHHHCCCHH------------------HHHHHHHHHHHHHCCCCEE
T ss_conf 825998275999997389987338997------0255349999------------------9999999999974899689
Q ss_pred EEE
Q ss_conf 998
Q gi|254780875|r 224 SVE 226 (264)
Q Consensus 224 ~lE 226 (264)
++-
T Consensus 328 l~R 330 (376)
T pfam11899 328 LFR 330 (376)
T ss_pred EEE
T ss_conf 983
No 359
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=52.22 E-value=2.8 Score=22.24 Aligned_cols=117 Identities=20% Similarity=0.135 Sum_probs=58.2
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCC-CHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 605664214211233122223--3321001333222-0024442011000122222222222222---------2---10
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCK-ALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~-al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
..+|=-|.++| |+.++|+.+ .+++|+..|.+.+ ..+.+.+....++. ++.+++.|+-+. . .+
T Consensus 6 K~~lITGgs~G-IG~aia~~la~~G~~Vii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dlt~~~~v~~~~~~~~~~~g 82 (248)
T PRK05557 6 KVALVTGASRG-IGRAIAERLAAQGANVVLNYASSEAGAEALVAEIGALGG--KALAVQGDVADAESIERAVDEAKAEFG 82 (248)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 88999489768-999999999987998999969856589999999996399--589999038999999999999999829
Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCEEEE
Q ss_conf 02333201133321001221111123575433210112321025689999985378--878999
Q gi|254780875|r 164 LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNK--DGLCSV 225 (264)
Q Consensus 164 ~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~--~G~l~l 225 (264)
+.|++|.|--......+..++.+ .|+-...+. +.-.-.+++.+..+|+. +|.++.
T Consensus 83 ~iD~linnAg~~~~~~~~~~~~~--~~~~~~~vN-----~~~~~~~~~~~~p~m~~~~~G~IVn 139 (248)
T PRK05557 83 GVDILVNNAGITRDNLLMRMKEE--DWDRVIDTN-----LTGVFNLTKAVARPMMKQRSGRIIN 139 (248)
T ss_pred CCCEEEECCCCCCCCCHHHCCHH--HHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 97199989977999991559999--999999878-----3049999999999999706971899
No 360
>PRK06101 short chain dehydrogenase; Provisional
Probab=52.19 E-value=3.3 Score=21.79 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=15.1
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHH
Q ss_conf 5664214211233122223--3321001333222002
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALE 135 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~ 135 (264)
||=.|++|| |+.++|+++ .+++|+.++.+++.++
T Consensus 4 vlITGassG-IG~a~A~~la~~G~~Vi~~~R~~~~l~ 39 (241)
T PRK06101 4 VLITGATSG-IGKQLALDYAKAGWKVIACGRNEAVLD 39 (241)
T ss_pred EEEECCCHH-HHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 999224049-999999999987998999989999999
No 361
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=51.90 E-value=4.1 Score=21.16 Aligned_cols=40 Identities=33% Similarity=0.345 Sum_probs=33.6
Q ss_pred CEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 056642142-1123312222333210013332220024442
Q gi|254780875|r 100 RILDLGTGT-GAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 100 ~vLDlG~Gs-G~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
+++=+|||. |.+++.+|+.....+|+++|.++.-++.|++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 89998888999999999987698279997999899999998
No 362
>PRK07479 consensus
Probab=51.85 E-value=2 Score=23.27 Aligned_cols=73 Identities=22% Similarity=0.177 Sum_probs=45.3
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------------CCH
Q ss_conf 605664214211233122223--332100133322200244420110001222222222222222------------100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV------------EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------------~~~ 164 (264)
..+|=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+-....+ .++.++..|+-+.- .++
T Consensus 6 K~alITGgs~G-IG~a~a~~la~~G~~V~i~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~ 82 (252)
T PRK07479 6 KVAIVTGAGSG-FGEGIAKRFAREGAKVVVADLNAAAAERVASEIADAG--GNAIAVAADVSRGADVEALVEAALEAFGR 82 (252)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 88999388768-9999999999879999999798999999999998539--97899992589999999999999998199
Q ss_pred HHHHHHCCHH
Q ss_conf 2333201133
Q gi|254780875|r 165 FDVIVSNPPY 174 (264)
Q Consensus 165 fD~IvsNPPY 174 (264)
.|++|.|--+
T Consensus 83 iD~lVnnAG~ 92 (252)
T PRK07479 83 VDIVVNNAGT 92 (252)
T ss_pred CCEEEECCCC
T ss_conf 8599989976
No 363
>PRK06172 short chain dehydrogenase; Provisional
Probab=51.59 E-value=3.4 Score=21.69 Aligned_cols=72 Identities=18% Similarity=-0.013 Sum_probs=44.2
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222------------2100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~~ 164 (264)
..+|=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+-.+..+. ++.++..|+-+. ..++
T Consensus 8 KvalVTGas~G-IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 84 (253)
T PRK06172 8 QVALVTGGAAG-IGRATAIAFAREGAKVVVADRDAAGGEETVALIREAGG--EALFIACDVTRDAEVKALVEKTIAAYGR 84 (253)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 98999375768-99999999998799899997988999999999996499--3799981899999999999999998299
Q ss_pred HHHHHHCCH
Q ss_conf 233320113
Q gi|254780875|r 165 FDVIVSNPP 173 (264)
Q Consensus 165 fD~IvsNPP 173 (264)
.|++|.|-=
T Consensus 85 iDiLVNNAG 93 (253)
T PRK06172 85 LDYAFNNAG 93 (253)
T ss_pred CCEEEECCC
T ss_conf 999998988
No 364
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.38 E-value=5 Score=20.62 Aligned_cols=116 Identities=14% Similarity=0.022 Sum_probs=54.5
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCC-CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCH
Q ss_conf 05664214211233122223--3321001-3332220024442011000122222222222222---------2---100
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVG-VDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGL 164 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~-~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~ 164 (264)
.+|=-|.++| |+.++|.++ .+++|.. .+.+.+..+.+.+-.+.++.+ +..+.+|+-+. . -++
T Consensus 5 valITGgs~G-IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~--~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 81 (249)
T PRK06077 5 VVVVTGSGRG-IGRAIAVRLAKEGAKVVVNAKKRAEEMNETLRMVKEYGGE--GIGVLADVSTREGCRTLAKAALDNFGV 81 (249)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8999263678-9999999999879989998488768999999999975995--899984799999999999999998199
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 2333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 165 FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 165 fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
.|++|.|-=.-....+.+++.+ .|+-.... -+.-.-.+.+.+..+|+++|.++.
T Consensus 82 iDiLVnNAG~~~~~~~~~~~~~--~~~~~~~v-----N~~~~~~~~~~~~~~m~~~G~IIn 135 (249)
T PRK06077 82 VDILVNNAGLGLFSPFLNADDR--LIEKHIST-----DLKSVIYCSQEAAKVMREGGEIIN 135 (249)
T ss_pred CCEEEECCCCCCCCCCCCCCHH--HHHHHHHH-----HHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 8889985775788750109999--99999988-----621899999999999616978998
No 365
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=50.96 E-value=20 Score=16.72 Aligned_cols=36 Identities=8% Similarity=0.204 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCCCEE-EEEECCCHHHHHHHHHHHC
Q ss_conf 56899999853788789-9981766799999999978
Q gi|254780875|r 207 RTIADGVSRHLNKDGLC-SVEIGYNQKVDVVRIFESR 242 (264)
Q Consensus 207 ~~ii~~~~~~L~~~G~l-~lEig~~q~~~v~~ll~~~ 242 (264)
...++....++.++..+ .+.-|....+.+.+.+-+.
T Consensus 80 ~~al~~l~~~l~~~t~iv~lqNG~g~~e~l~~~~~~~ 116 (150)
T pfam02558 80 AEALEDLAPLLGPNTVVLLLQNGLGHEEELREAFPRE 116 (150)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCC
T ss_conf 9999998865288838999425877399999875998
No 366
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=50.96 E-value=20 Score=16.72 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=25.6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 246860566421421123312222333210013
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGV 127 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~ 127 (264)
-...-+||++|++||-.++-.....|..-|+..
T Consensus 490 ~qr~~~vl~l~~~sll~~~~~l~~~peggv~~~ 522 (726)
T PRK13341 490 WQRHDRVLNLANRSLLWALEPLRAVPEGGVTVL 522 (726)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 563435998338512652677861899866998
No 367
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=50.56 E-value=20 Score=16.68 Aligned_cols=135 Identities=15% Similarity=0.061 Sum_probs=66.3
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCC----CCCHHHHHHCCCC-CCCCCCCCCCCCCCCCC-CCCHHH
Q ss_conf 12468605664214211233122223-33210013332----2200244420110-00122222222222222-210023
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDIS----CKALEIAKSNAVT-NGVSERFDTLQSDWFSS-VEGLFD 166 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis----~~al~~A~~N~~~-~~~~~~i~~~~~d~~~~-~~~~fD 166 (264)
.-++..+|.|+--|+|-..-.++... |.-.|++.-=. ...-...+.|+.. -....|++.+-.+.... .+++.|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred CCCCCCEEEEEECCCCCHHHHHCHHCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 26899879998348850744411002875059885643432510140366666664222310455277500458997654
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-EC--------------CCH
Q ss_conf 332011333210012211111235754332101123210256899999853788789998-17--------------667
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE-IG--------------YNQ 231 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE-ig--------------~~q 231 (264)
++..|-=|+ ++ +...+.+. .-.++-....+.|||||.+.+| |. +-.
T Consensus 125 ~~~~~~~yh---dm------------h~k~i~~~----~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~ 185 (238)
T COG4798 125 LVPTAQNYH---DM------------HNKNIHPA----TAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRID 185 (238)
T ss_pred CCCCCHHHH---HH------------HCCCCCCC----HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCC
T ss_conf 133211110---01------------10456852----499999999985388847998740246898800224433657
Q ss_pred HHHHHHHHHHCCCCEE
Q ss_conf 9999999997898058
Q gi|254780875|r 232 KVDVVRIFESRKLFLV 247 (264)
Q Consensus 232 ~~~v~~ll~~~gf~~v 247 (264)
...|.+..+..||...
T Consensus 186 ~a~V~a~veaaGFkl~ 201 (238)
T COG4798 186 PAVVIAEVEAAGFKLE 201 (238)
T ss_pred HHHHHHHHHHHCCEEE
T ss_conf 5899999985132551
No 368
>PRK08226 short chain dehydrogenase; Provisional
Probab=50.33 E-value=3.7 Score=21.45 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
+..+|=-|.++| |+.++|+.+ .+++|+.+|+++++.+.+++- ...+ .++.++..|+-+. . .+
T Consensus 6 gKvalVTGas~G-IG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~-~~~g--~~~~~~~~Dvsd~~~v~~~v~~~~~~~G 81 (263)
T PRK08226 6 GKTALITGALQG-IGEGIARVFARHGANLILLDISPEIEKLADEL-CGRG--HRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHCC--CCEEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 988999473779-99999999998799899996987999999999-8369--9179999417999999999999999839
Q ss_pred HHHHHHHCCHHH
Q ss_conf 023332011333
Q gi|254780875|r 164 LFDVIVSNPPYI 175 (264)
Q Consensus 164 ~fD~IvsNPPYI 175 (264)
+.|++|.|-=..
T Consensus 82 ~iDiLVNNAGi~ 93 (263)
T PRK08226 82 RIDILVNNAGVC 93 (263)
T ss_pred CCCEEEECCCCC
T ss_conf 986999899778
No 369
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase; InterPro: IPR006534 These sequences represent the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast . ; GO: 0016887 ATPase activity, 0015992 proton transport, 0016021 integral to membrane.
Probab=50.31 E-value=11 Score=18.47 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=64.2
Q ss_pred CCCCCCCHH----HHHHHHHHHHH--HHCCCCHH--------HHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 448858989----99999999998--97498376--------85363144237677504620512235655531012332
Q gi|254780875|r 25 DPDSVLDDR----QRFFLTNAIVR--SLKHESIH--------RILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSL 90 (264)
Q Consensus 25 ~~~~~l~~~----~~~~l~~~i~r--r~~g~Pl~--------YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~ 90 (264)
+.++++.++ -.+...++-+| |.-|.-.+ +=-|.|+|.|+==.-|| ||+||++=|+.+..+
T Consensus 428 ~~~~~~~~~v~~~Ve~~v~~lA~RG~RaLGVA~~evP~g~~~~~~g~W~~~GllplfDP----PR~DT~eTI~~A~~~-- 501 (835)
T TIGR01647 428 DNKKEIEEEVREKVEEKVEELASRGYRALGVARTEVPSGEKADEKGRWHFLGLLPLFDP----PRHDTKETIERAREL-- 501 (835)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCC----CCCCHHHHHHHHHHC--
T ss_conf 14342788999888999999970787142143201778655578873588872002783----698738999999876--
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 110124686056642142112331222233321001333222002444201100012222222222222
Q gi|254780875|r 91 PRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159 (264)
Q Consensus 91 ~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~ 159 (264)
--+.|- || -+.+.+||+-+.++|+..|+ +.++-|.
T Consensus 502 -------------------------GV~VKM--vT-----GDhlaIAKEtaR~LGlGtni--~~~~~L~ 536 (835)
T TIGR01647 502 -------------------------GVEVKM--VT-----GDHLAIAKETARRLGLGTNI--YNADVLL 536 (835)
T ss_pred -------------------------CCEEEE--EE-----HHHHHHHHHHHHHCCCCCCC--CCCCCCC
T ss_conf -------------------------976989--70-----02678776653215798753--4741004
No 370
>PRK08862 short chain dehydrogenase; Provisional
Probab=50.24 E-value=3.5 Score=21.61 Aligned_cols=71 Identities=20% Similarity=0.023 Sum_probs=45.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC---------CCC---C
Q ss_conf 8605664214211233122223--3321001333222002444201100012222222222222---------221---0
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS---------SVE---G 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~---------~~~---~ 163 (264)
+..+|=-|.|+| |+-++|+++ .+++|+.+|.+++.++-+.+.+...+-+ +..+..|..+ ... +
T Consensus 5 ~Kv~lITGas~G-IG~aiA~~~A~~Ga~Vii~~r~~~~l~~~~~~i~~~g~~--~~~~~~d~~~~~~v~~~~~~i~~~~g 81 (227)
T PRK08862 5 NSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALNDTYEQCSALTDN--VYSYQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 999999798879-999999999987999999969999999999999975897--48999516619999999999999958
Q ss_pred H-HHHHHHC
Q ss_conf 0-2333201
Q gi|254780875|r 164 L-FDVIVSN 171 (264)
Q Consensus 164 ~-fD~IvsN 171 (264)
+ .|++|.|
T Consensus 82 ~~iDvLVNN 90 (227)
T PRK08862 82 RAPDVLVNN 90 (227)
T ss_pred CCCEEEEEC
T ss_conf 997499856
No 371
>PRK05867 short chain dehydrogenase; Provisional
Probab=50.11 E-value=3.6 Score=21.57 Aligned_cols=76 Identities=21% Similarity=0.082 Sum_probs=48.6
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
-++..+|=-|.++| |+.++|+.+ .+++|..+|.+.+.++.+.+-....+ .++..+..|+-+. .
T Consensus 7 L~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ei~~~g--~~~~~~~~Dvt~~~~v~~~v~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 89998999795659-9999999999869999999798899999999998459--91999983699999999999999999
Q ss_pred CCHHHHHHHCCHH
Q ss_conf 1002333201133
Q gi|254780875|r 162 EGLFDVIVSNPPY 174 (264)
Q Consensus 162 ~~~fD~IvsNPPY 174 (264)
-++.|++|.|-=.
T Consensus 84 ~G~iDiLVnNAG~ 96 (253)
T PRK05867 84 LGGIDIAVCNAGI 96 (253)
T ss_pred HCCCCEEEECCCC
T ss_conf 5998599989977
No 372
>PRK07831 short chain dehydrogenase; Provisional
Probab=49.94 E-value=4.2 Score=21.13 Aligned_cols=76 Identities=21% Similarity=0.135 Sum_probs=43.4
Q ss_pred CCCCEEEEEC-CCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 6860566421-4211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 97 DVVRILDLGT-GTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 97 ~~~~vLDlG~-GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
++.++|=-|. |+| |+.++|+.+ .+++|..+|.+.+.+.-+.+......-..++..+..|+-+. .
T Consensus 15 ~gKvalVTGgsg~G-IG~a~a~~la~~Ga~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt~~~~v~~~v~~~~~~ 93 (261)
T PRK07831 15 AGKVVVVTAAAGTG-IGSATARRALEEGADVVISDIHERRLGETADELAAELGLGRVEGVVCDVTSEAQVDALIDAAVER 93 (261)
T ss_pred CCCEEEEECCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99849994999647-89999999998799899980877778999999998438772899975689999999999999998
Q ss_pred CCHHHHHHHCCH
Q ss_conf 100233320113
Q gi|254780875|r 162 EGLFDVIVSNPP 173 (264)
Q Consensus 162 ~~~fD~IvsNPP 173 (264)
-++.|++|.|-=
T Consensus 94 ~G~iDiLVNNAG 105 (261)
T PRK07831 94 LGRLDVLVNNAG 105 (261)
T ss_pred HCCCCEEEECCC
T ss_conf 299869998886
No 373
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=49.85 E-value=3.3 Score=21.78 Aligned_cols=13 Identities=8% Similarity=-0.153 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3210013332220
Q gi|254780875|r 121 FFKGVGVDISCKA 133 (264)
Q Consensus 121 ~~~v~~~Dis~~a 133 (264)
+++|+.++.+++.
T Consensus 24 Ga~Vv~~~r~~~~ 36 (248)
T PRK10538 24 GHKVIATGRRQER 36 (248)
T ss_pred CCEEEEEECCHHH
T ss_conf 9999999899999
No 374
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=49.66 E-value=21 Score=16.59 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHCCCCCE
Q ss_conf 1025689999985378878
Q gi|254780875|r 204 SHYRTIADGVSRHLNKDGL 222 (264)
Q Consensus 204 ~~~~~ii~~~~~~L~~~G~ 222 (264)
...+.++.++....+..|.
T Consensus 214 ~l~~~l~~E~~~va~a~G~ 232 (307)
T PRK06522 214 ALIRALMEEVAAVAEAEGV 232 (307)
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999998699
No 375
>PRK07478 short chain dehydrogenase; Provisional
Probab=49.48 E-value=3.9 Score=21.32 Aligned_cols=72 Identities=18% Similarity=0.036 Sum_probs=45.1
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------------CCH
Q ss_conf 605664214211233122223--332100133322200244420110001222222222222222------------100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV------------EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------------~~~ 164 (264)
..+|=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+-....+ .++.++.+|+-+.- -++
T Consensus 7 KvalVTGas~G-IG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~ei~~~g--~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~ 83 (254)
T PRK07478 7 KVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 87999588768-9999999999879999999798899999999999649--90899976899999999999999998499
Q ss_pred HHHHHHCCH
Q ss_conf 233320113
Q gi|254780875|r 165 FDVIVSNPP 173 (264)
Q Consensus 165 fD~IvsNPP 173 (264)
.|++|.|-=
T Consensus 84 iDiLVNNAG 92 (254)
T PRK07478 84 LDIAFNNAG 92 (254)
T ss_pred CCEEEECCC
T ss_conf 989998874
No 376
>KOG2651 consensus
Probab=49.39 E-value=4.1 Score=21.20 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=31.2
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 6860566421421123312222333210013332220024442
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
.-..+.|+|.|-|-++-.+...+ +..|.|+|=|..+.+-|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCHHHCCCCCCCHHHHHHHHCC-CCEEEEECCCHHHHHHHHH
T ss_conf 87114115777328999986426-8169996463688999998
No 377
>PRK07825 short chain dehydrogenase; Provisional
Probab=48.74 E-value=3.9 Score=21.32 Aligned_cols=36 Identities=19% Similarity=-0.027 Sum_probs=15.8
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHH
Q ss_conf 05664214211233122223--33210013332220024
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEI 136 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~ 136 (264)
.++=-|++|| |+.++|+.+ .+++|..+|.+.+.++-
T Consensus 7 vvlITGassG-IG~a~A~~la~~Ga~V~i~~r~~~~l~~ 44 (273)
T PRK07825 7 VIAITGGARG-IGLATARALAALGAKVAIGDLDEALAKE 44 (273)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 8999262339-9999999999879989999799999999
No 378
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=48.66 E-value=17 Score=17.16 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=50.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------CCHHHHHHHCCHH
Q ss_conf 5664214211233122223332100133322200244420110001222222222222222------1002333201133
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV------EGLFDVIVSNPPY 174 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------~~~fD~IvsNPPY 174 (264)
-|..-+||--++-.+. ++.-+..+++..++-...-+.|.. -+.|+.+.++|-|..+ .++=-+|+-.|||
T Consensus 92 ~l~~YpGSP~lA~~ll--R~qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPf 166 (279)
T COG2961 92 GLRYYPGSPLLARQLL--REQDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPF 166 (279)
T ss_pred CCCCCCCCHHHHHHHC--CHHCEEEEEECCCCHHHHHHHHHC---CCCCEEEEECCCHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 8045899989999871--401003320048457999997627---78414788347188886218997762589958986
Q ss_pred H
Q ss_conf 3
Q gi|254780875|r 175 I 175 (264)
Q Consensus 175 I 175 (264)
=
T Consensus 167 E 167 (279)
T COG2961 167 E 167 (279)
T ss_pred C
T ss_conf 6
No 379
>PRK05416 hypothetical protein; Provisional
Probab=48.57 E-value=17 Score=17.20 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=47.7
Q ss_pred HHHHH-HHCCHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---CCCCCEEEEE--ECC--CH---
Q ss_conf 02333-2011333210-01221111123575433210112321025689999985---3788789998--176--67---
Q gi|254780875|r 164 LFDVI-VSNPPYIESV-IVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRH---LNKDGLCSVE--IGY--NQ--- 231 (264)
Q Consensus 164 ~fD~I-vsNPPYI~~~-~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~---L~~~G~l~lE--ig~--~q--- 231 (264)
-||+= +-||=|++.- ....++++|.+| +.+.+..-+|+..+......+ ....|.-++- ||. +|
T Consensus 188 VfDvRfLpNP~y~~~Lr~~tG~D~~V~~y-----v~~~~~~~~f~~~i~~~l~~~lp~y~~egk~yltIaiGCTGG~HRS 262 (292)
T PRK05416 188 VFDVRFLPNPHYVPELRPLTGLDKPVADY-----VLAQPEVEEFLDQIRDLLEFWLPGYRREGKSYLTIAIGCTGGQHRS 262 (292)
T ss_pred EEEECCCCCCCCCHHHCCCCCCCHHHHHH-----HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH
T ss_conf 45513578998864435689998589999-----9749229999999999999999999984997799997588987179
Q ss_pred ---HHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf ---999999999789805899805689
Q gi|254780875|r 232 ---KVDVVRIFESRKLFLVNAFKDYGG 255 (264)
Q Consensus 232 ---~~~v~~ll~~~gf~~v~~~kD~~g 255 (264)
++.+.+.|++ ||.....++|+.-
T Consensus 263 V~~ae~l~~~l~~-~~~v~v~HRdl~~ 288 (292)
T PRK05416 263 VAIAERLAERLRA-GYNVQVRHRDLER 288 (292)
T ss_pred HHHHHHHHHHHHC-CCCCEEECCCCCC
T ss_conf 9999999999857-9972787366787
No 380
>PRK08589 short chain dehydrogenase; Validated
Probab=48.56 E-value=4.6 Score=20.89 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
+..+|=-|.++| |+.++|+.+ .+++|+..|+++++-+.+++ ....+ .++.++..|+-+. . -+
T Consensus 6 gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~d~~~~~~~~~~~-i~~~g--~~~~~~~~Dvsd~~~v~~~v~~~~~~~G 81 (272)
T PRK08589 6 NKVAVITGASTG-IGQASAIALAQEGAYVLAVDIAEAVSETVDK-IKSNG--GKAKAYHVDISDEQQVKDFASDIKEQFG 81 (272)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHCC--CCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 798999782569-9999999999869999998382789999999-99559--9489999607999999999999999829
Q ss_pred HHHHHHHCC
Q ss_conf 023332011
Q gi|254780875|r 164 LFDVIVSNP 172 (264)
Q Consensus 164 ~fD~IvsNP 172 (264)
+.|++|.|-
T Consensus 82 ~iDiLVNNA 90 (272)
T PRK08589 82 HIDVLFNNA 90 (272)
T ss_pred CCCEEEECC
T ss_conf 987899898
No 381
>PRK07041 short chain dehydrogenase; Provisional
Probab=48.37 E-value=4.1 Score=21.18 Aligned_cols=81 Identities=19% Similarity=0.080 Sum_probs=44.9
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------C--CCHHHH
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222------2--100233
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------V--EGLFDV 167 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------~--~~~fD~ 167 (264)
+.++|=.|.++| |+.++|+.+ .+++|..+|.+++.++.+.+..... .++..+..|+-+. + -+++|.
T Consensus 7 gK~~lITGgs~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~g~~d~ 82 (240)
T PRK07041 7 DQKVLVVGGSSG-IGLAAARAFAARGADVTIASRSRERLAAAARALGGP---RPVRTAALDITDEAAVDAFFAEAGPFDH 82 (240)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCC---CCEEEEECCCCCHHHHHHHHHHHCCCCE
T ss_conf 998999577888-999999999987999999959889999999984788---8669998479999999999997098788
Q ss_pred HHHCCHHHHHHCCCC
Q ss_conf 320113332100122
Q gi|254780875|r 168 IVSNPPYIESVIVDC 182 (264)
Q Consensus 168 IvsNPPYI~~~~~~~ 182 (264)
+|.|.-.........
T Consensus 83 lv~nag~~~~~~~~~ 97 (240)
T PRK07041 83 VVITAADTAGGPVRA 97 (240)
T ss_pred EEECCCCCCCCCHHH
T ss_conf 998234479998102
No 382
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=48.12 E-value=2.4 Score=22.72 Aligned_cols=71 Identities=21% Similarity=0.164 Sum_probs=46.4
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------------CCHH
Q ss_conf 05664214211233122223--332100133322200244420110001222222222222222------------1002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV------------EGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------------~~~f 165 (264)
.+|=-|.++| |+.++++.+ .+++|..+|.+++.++-.....+..+- ++..+..|+-+.- -++.
T Consensus 5 valITG~s~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dv~d~~~v~~~v~~~~~~~G~i 81 (250)
T TIGR03206 5 TAIVTGGGGG-IGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQALGPV 81 (250)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999685768-99999999998799999997988999999999995399--28999944899999999999999975999
Q ss_pred HHHHHCCH
Q ss_conf 33320113
Q gi|254780875|r 166 DVIVSNPP 173 (264)
Q Consensus 166 D~IvsNPP 173 (264)
|++|.|-=
T Consensus 82 DilvnnAg 89 (250)
T TIGR03206 82 DVLVNNAG 89 (250)
T ss_pred CEEEECCC
T ss_conf 79998988
No 383
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=47.56 E-value=5.3 Score=20.45 Aligned_cols=75 Identities=20% Similarity=0.107 Sum_probs=49.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
-++..+|=-|.++| |+.++|..+ .+++|+.+|.+.+.++-+.+.....+- ++..+.+|+.+. .
T Consensus 9 L~gKvalVTGas~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~~~~~v~~~~~~ 85 (255)
T PRK06113 9 LDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAVSK 85 (255)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99998999588778-99999999998799999996988999999999996599--0899983689999999999999998
Q ss_pred CCHHHHHHHCCH
Q ss_conf 100233320113
Q gi|254780875|r 162 EGLFDVIVSNPP 173 (264)
Q Consensus 162 ~~~fD~IvsNPP 173 (264)
.++.|++|.|--
T Consensus 86 ~G~iDilVnNAG 97 (255)
T PRK06113 86 LGKVDILVNNAG 97 (255)
T ss_pred HCCCCEEEECCC
T ss_conf 199889998788
No 384
>PRK12939 short chain dehydrogenase; Provisional
Probab=47.53 E-value=2.2 Score=22.96 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=61.3
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222---------2---100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~ 164 (264)
..+|=-|.++| |+.++|+.+ .+++|+..|.+.+.++-+.+-.+..|. ++.++.+|+-+. . -++
T Consensus 8 KvalVTGgs~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 84 (250)
T PRK12939 8 KRALVTGAARG-LGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 87999583668-99999999998799999996988999999999995599--0999992489999999999999997499
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCEEEE
Q ss_conf 2333201133321001221111123575433210112321025689999985378--878999
Q gi|254780875|r 165 FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNK--DGLCSV 225 (264)
Q Consensus 165 fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~--~G~l~l 225 (264)
.|++|.|-=+.....+..++.+ +|+-..-+ .+.-.-.+.+.+..+|+. +|.++.
T Consensus 85 iDiLVNNAG~~~~~~~~~~~~e--~~~~~~~i-----Nl~~~~~~~k~~~~~m~~~~~G~IIn 140 (250)
T PRK12939 85 LDGLVNNAGITNSKSATELDID--TWDAVMNV-----NVRGTFLMSRAALPHLRDSGRGRIVN 140 (250)
T ss_pred CCEEEECCCCCCCCCCHHCCHH--HHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9799988778999990349999--99999999-----82999999999999999849937999
No 385
>PRK07063 short chain dehydrogenase; Provisional
Probab=47.33 E-value=4.8 Score=20.71 Aligned_cols=74 Identities=22% Similarity=0.170 Sum_probs=46.2
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCC-CCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 68605664214211233122223--33210013332220024442011-000122222222222222---------2---
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAV-TNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~-~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
++..+|=-|.++| |+.++|+.+ .+++|+.+|++.+.++-+.+... ..+ .++.+++.|+-+. .
T Consensus 6 ~gKvalVTGa~~G-IG~aiA~~~a~~Ga~V~i~~~~~~~~~~~~~~l~~~~g--~~~~~~~~Dvt~~~~v~~~v~~~~~~ 82 (259)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFVREGAAVALADLDAALAERAAAAIARQTG--ARVLALPADVTRAASVRAAVARAEAA 82 (259)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9988999587878-99999999998799899997987899999999988509--91899983689999999999999998
Q ss_pred CCHHHHHHHCCH
Q ss_conf 100233320113
Q gi|254780875|r 162 EGLFDVIVSNPP 173 (264)
Q Consensus 162 ~~~fD~IvsNPP 173 (264)
-++.|++|.|-=
T Consensus 83 ~G~iDiLVNNAG 94 (259)
T PRK07063 83 FGPLDVLVNNAG 94 (259)
T ss_pred HCCCCEEEECCC
T ss_conf 199889998997
No 386
>PRK07774 short chain dehydrogenase; Provisional
Probab=46.78 E-value=4.6 Score=20.86 Aligned_cols=71 Identities=21% Similarity=0.148 Sum_probs=43.8
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222------------2100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~~ 164 (264)
..+|=-|.++| |+.++++.+ .+++|+.+|++++.++-+.+-...++.. ...++.|+-+. --++
T Consensus 7 K~alVTGgs~G-iG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~~fG~ 83 (250)
T PRK07774 7 KVAIVTGAAGG-IGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGT--AIAVQVDVSDPDSAKAMADRTVSAFGG 83 (250)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE--EEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 88999797688-999999999986999999979889999999999855984--999982589999999999999998399
Q ss_pred HHHHHHCC
Q ss_conf 23332011
Q gi|254780875|r 165 FDVIVSNP 172 (264)
Q Consensus 165 fD~IvsNP 172 (264)
.|++|.|-
T Consensus 84 iDilVNnA 91 (250)
T PRK07774 84 IDYLVNNA 91 (250)
T ss_pred CCEEEECC
T ss_conf 98999888
No 387
>KOG0879 consensus
Probab=46.35 E-value=9.4 Score=18.83 Aligned_cols=56 Identities=21% Similarity=0.132 Sum_probs=44.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 214211233122223332100133322200244420110001222222222222222
Q gi|254780875|r 105 GTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV 161 (264)
Q Consensus 105 G~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~ 161 (264)
|-|||+.+|. ...+++.+.+.--..|..+..|..-...||.+--+.+.+.||++.-
T Consensus 82 gDGtG~~sIy-~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~K 137 (177)
T KOG0879 82 GDGTGVASIY-GSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGK 137 (177)
T ss_pred CCCCEEEEEC-CCCCCCCCEEEECCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 7884377870-7877886616632787605311269998774699994024540582
No 388
>PRK08263 short chain dehydrogenase; Provisional
Probab=46.33 E-value=3.8 Score=21.40 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=9.2
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 246860566421421123
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVC 112 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~ 112 (264)
.+..-+|+-+++.+|-.+
T Consensus 125 ~~~~G~IvnisS~ag~~~ 142 (275)
T PRK08263 125 AQRSGHIIQISSIGGISA 142 (275)
T ss_pred HCCCCEEEEECCHHHCCC
T ss_conf 169977999457010567
No 389
>PRK05993 short chain dehydrogenase; Provisional
Probab=46.29 E-value=3.7 Score=21.49 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=10.3
Q ss_pred CCCCCCEEEEECCCCCCCC
Q ss_conf 2468605664214211233
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCL 113 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i 113 (264)
+....+|+=+++.+|-++.
T Consensus 124 ~~~~G~IVnisSi~g~~~~ 142 (277)
T PRK05993 124 KQGHGRIVQCSSILGLVPM 142 (277)
T ss_pred CCCCCEEEEECCHHHCCCC
T ss_conf 4898389998884448889
No 390
>pfam06016 Reovirus_L2 Reovirus core-spike protein lambda-2 (L2). This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts.
Probab=45.95 E-value=20 Score=16.62 Aligned_cols=47 Identities=32% Similarity=0.256 Sum_probs=35.4
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 0124686056642142112331222233321001333222002444201
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNA 141 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~ 141 (264)
....+...+||+|||--|-.+++.- |...|+.+|.-|-|--.+--|+
T Consensus 818 ~~~~~~~h~LDLGTGPEaRiLsliP--~~~pVTm~D~RP~aep~gcw~~ 864 (1289)
T pfam06016 818 TDFTDLKHWLDLGTGPEARILSLIP--PTLPVTMCDTRPFAEPSGCWNA 864 (1289)
T ss_pred EECCCCCEEEEECCCCCCEEEEECC--CCCCEEEECCCCCCCHHHHHHH
T ss_conf 2047745578705886522454159--9985168537776202223445
No 391
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=45.82 E-value=21 Score=16.50 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 21001333222002
Q gi|254780875|r 122 FKGVGVDISCKALE 135 (264)
Q Consensus 122 ~~v~~~Dis~~al~ 135 (264)
-.|+++|+++.-++
T Consensus 24 HeVv~vDid~~KV~ 37 (414)
T COG1004 24 HEVVCVDIDESKVE 37 (414)
T ss_pred CEEEEEECCHHHHH
T ss_conf 84899957889999
No 392
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=45.71 E-value=24 Score=16.20 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHCCCCC--EEEEEECCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 32102568999998537887--899981766799999999978980589980568
Q gi|254780875|r 202 GLSHYRTIADGVSRHLNKDG--LCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYG 254 (264)
Q Consensus 202 Gl~~~~~ii~~~~~~L~~~G--~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD~~ 254 (264)
|..+=+.++....+.++..| .+++|+..+-.. ...+.++.||..+.++++|.
T Consensus 75 ~~G~g~~Ll~~~~~~~~~~g~~~i~LEVr~sN~~-A~~lY~k~GF~~~g~R~~YY 128 (144)
T PRK09491 75 RQGLGRALLEHLIDELEKRGVATLWLEVRASNAA-AIALYESLGFNEVTIRRNYY 128 (144)
T ss_pred HCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH-HHHHHHHCCCEEECEECCCC
T ss_conf 4897999999999999987997999999578789-99999988998917887856
No 393
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.61 E-value=8 Score=19.29 Aligned_cols=73 Identities=12% Similarity=-0.042 Sum_probs=38.5
Q ss_pred CCCEEEEECCCC-CCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 860566421421-1233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 98 VVRILDLGTGTG-AVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 98 ~~~vLDlG~GsG-~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
..++|=-|.++| -|+.++|+.+ .+++|..++.++++.+.+++=++..+- ..+...|+-+. . -
T Consensus 6 GK~alVTGaa~g~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T PRK07533 6 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDA---PLLMPLDVREPGQLEAVFARIAEEW 82 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC---EEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 9989996888980899999999998799999982887789999999974598---1899916999999999999999984
Q ss_pred CHHHHHHHCCH
Q ss_conf 00233320113
Q gi|254780875|r 163 GLFDVIVSNPP 173 (264)
Q Consensus 163 ~~fD~IvsNPP 173 (264)
++.|++|.|--
T Consensus 83 G~iDilVnna~ 93 (254)
T PRK07533 83 GRLDFVLHSIA 93 (254)
T ss_pred CCCCEEEECCC
T ss_conf 99778974221
No 394
>PRK05599 hypothetical protein; Provisional
Probab=44.23 E-value=4.4 Score=21.01 Aligned_cols=15 Identities=13% Similarity=0.523 Sum_probs=7.1
Q ss_pred HHHHHHCCHHHHHHC
Q ss_conf 233320113332100
Q gi|254780875|r 165 FDVIVSNPPYIESVI 179 (264)
Q Consensus 165 fD~IvsNPPYI~~~~ 179 (264)
+.+.+-+|.||.+.-
T Consensus 173 I~V~~v~PG~V~T~m 187 (246)
T PRK05599 173 VRLIIARPGFVIGSM 187 (246)
T ss_pred CEEEEEECCCCCCCC
T ss_conf 689998449883620
No 395
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.78 E-value=12 Score=18.01 Aligned_cols=76 Identities=12% Similarity=0.019 Sum_probs=38.1
Q ss_pred CCEEEEECCC-CCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 6056642142-11233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 99 VRILDLGTGT-GAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 99 ~~vLDlG~Gs-G~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
..+|=-|+++ --|+.++|+.+ .+++|+.++.+.+..+.+++-....+- .+..+++.|+-+. . -+
T Consensus 7 K~~lVTGaag~rGIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 85 (256)
T PRK08594 7 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELAETLEQ-QESLVLPCDVTSDEEITACFETIKKEVG 85 (256)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 889998999996399999999998799999974880669999999987079-9479999138999999999999999858
Q ss_pred HHHHHHHCCHHH
Q ss_conf 023332011333
Q gi|254780875|r 164 LFDVIVSNPPYI 175 (264)
Q Consensus 164 ~fD~IvsNPPYI 175 (264)
+.|.++.|-.+.
T Consensus 86 ~id~lv~na~~~ 97 (256)
T PRK08594 86 VIHGVAHCIAFA 97 (256)
T ss_pred CCCEEEEEEEEC
T ss_conf 867466532102
No 396
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=43.67 E-value=7.3 Score=19.54 Aligned_cols=47 Identities=23% Similarity=0.111 Sum_probs=33.4
Q ss_pred CCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 1246860566421421123-3122223332100133322200244420
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVC-LALLKESPFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~-i~la~~~~~~~v~~~Dis~~al~~A~~N 140 (264)
...+.-+++=+|+|..-+. +.+|+.....+|+++|.++.-++.|++-
T Consensus 117 ~~~~g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~ 164 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
T ss_conf 789999899990786899999999984998799991998999999973
No 397
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=43.26 E-value=26 Score=15.95 Aligned_cols=14 Identities=7% Similarity=0.456 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 79999999997898
Q gi|254780875|r 231 QKVDVVRIFESRKL 244 (264)
Q Consensus 231 q~~~v~~ll~~~gf 244 (264)
...++.+.|.+.|.
T Consensus 334 ps~~ii~~L~~~g~ 347 (411)
T TIGR03026 334 PALDIIELLKEKGA 347 (411)
T ss_pred CHHHHHHHHHHCCC
T ss_conf 29999999997889
No 398
>PRK07985 oxidoreductase; Provisional
Probab=43.20 E-value=13 Score=17.96 Aligned_cols=120 Identities=13% Similarity=-0.003 Sum_probs=58.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCC--CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C-
Q ss_conf 468605664214211233122223--3321001333--2220024442011000122222222222222---------2-
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDI--SCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Di--s~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~- 161 (264)
-++..+|=-|.++| |+.++|+.+ .+++|.-.+. +....+.+.+-....+ .++.++.+|+-+. .
T Consensus 47 L~gKvalVTGas~G-IG~aiA~~lA~~GA~Vvi~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~lv~~~~ 123 (294)
T PRK07985 47 LKDRKALVTGGDSG-IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 89997999172669-999999999987999999429966678999999999729--958999767899999999999999
Q ss_pred --CCHHHHHHHCCHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf --1002333201133-321001221111123575433210112321025689999985378878999
Q gi|254780875|r 162 --EGLFDVIVSNPPY-IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 162 --~~~fD~IvsNPPY-I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
-+++|++|.|--. .+..++.++..+ +|+-.... --.| .-.+.+.+..+|+++|.++.
T Consensus 124 ~~fG~iDiLVnnAG~~~~~~~~~~~s~e--~~~~~~~v--Nl~g---~~~~~qaa~p~m~~gGsIIn 183 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSE--QFQKTFAI--NVFA---LFWLTQEAIPLLPKGASIIT 183 (294)
T ss_pred HHHCCCCEEEEECCCCCCCCCHHHCCHH--HHHHHHHH--HCHH---HHHHHHHHHHHHCCCCEEEE
T ss_conf 9859988899806666688883658999--99999998--6534---78888876776424877999
No 399
>PRK12937 short chain dehydrogenase; Provisional
Probab=42.10 E-value=4.9 Score=20.71 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=58.4
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCC-CCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCH
Q ss_conf 05664214211233122223--332100133322-20024442011000122222222222222---------2---100
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISC-KALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGL 164 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~-~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~ 164 (264)
.+|=-|.++| |+.++|+++ .+++|..++.+. +..+-..+-.+..+ .++..+++|+.+. . -++
T Consensus 7 ~alVTGgs~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~v~~~~~~~g~ 83 (245)
T PRK12937 7 VAIVTGASRG-IGAAIARRLAADGFAVAVNYAGSAAMADELVEEIEAAG--GRAIAVQADVADAAAVDRLFEAAETAFGR 83 (245)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8999485778-99999999998799999976998689999999999659--95899983789999999999999998199
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 2333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 165 FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 165 fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
.|++|.|--..+...+..++.+ .|+- .+.---.| .-.+++.+..+|+++|.++.
T Consensus 84 iDilVnNAg~~~~~~~~~~~~e--~w~~--~~~vNl~~---~~~~~~~~~~~m~~~G~IIn 137 (245)
T PRK12937 84 IDVLVNSAGIMPLAPIADGDLE--GFDR--TIAVNLRG---AFNVLGEAARHLRRGGRIIN 137 (245)
T ss_pred CCEEEEECCCCCCCCHHHCCHH--HHHH--HHHHHHHH---HHHHHHHHHHHHHCCCEEEE
T ss_conf 8899980548999881349999--9999--99998599---99999999999972882999
No 400
>PRK12746 short chain dehydrogenase; Provisional
Probab=42.06 E-value=3.7 Score=21.49 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=59.6
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCC-CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C-----
Q ss_conf 605664214211233122223--3321001-3332220024442011000122222222222222---------2-----
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVG-VDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V----- 161 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~-~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~----- 161 (264)
..++=-|.++| |+.++|+++ .+++|.- .+.+++..+-+.+..+..+ .++.++++|+.+. .
T Consensus 7 KvalITGga~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK12746 7 KVALVTGASRG-IGRAIAMRLANDGALVAIHYGRNKAAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 88999484768-99999999998799999965999899999999998559--9289997577999999999999999986
Q ss_pred ----CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf ----1002333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 162 ----EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 162 ----~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
.++.|++|.|.-.-.......+..+ .|+--.... +.-.-.+.+.+..+++..|.++.
T Consensus 84 ~~~g~g~iDiLVnnAg~~~~~~~~~~~~~--~~~~~~~vN-----l~~~f~~~k~~~p~m~~~G~IVn 144 (254)
T PRK12746 84 IRVGTSEIDILVNNAGIGTQGTIENTTEE--IFDEIMAVN-----IKAPFFLIQQTLPLLRAEGRVIN 144 (254)
T ss_pred HHCCCCCCCEEEECCCCCCCCCHHHCCHH--HHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 64168985189979978899991449999--999999985-----34689999999999861696699
No 401
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit; InterPro: IPR010051 This entry represents the large subunit of a family of nitrate reductases found in proteobacteria which are localised to the periplasm. This subunit binds molybdopterin and contains a twin-arginine motif at the N terminus. The protein associates with NapB, a soluble haem-containing protein and NapC, a membrane-bound cytochrome c. The periplasmic nitrate reductases are not involved in the assimilation of nitrogen, and are not directly involved in the formation of electrochemical gradients (i.e. respiration) either. Rather, the purpose of this enzyme is either dissimilatory (i.e. to dispose of excess reductive equivalents) or indirectly respiratory by virtue of the consumption of electrons derived from NADH via the proton translocating NADH dehydrogenase. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterised. In Escherichia coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).; GO: 0008940 nitrate reductase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding, 0042128 nitrate assimilation.
Probab=41.82 E-value=10 Score=18.60 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=18.6
Q ss_pred HHHHCCCCHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 9897498376853631442376775046205122356555
Q gi|254780875|r 43 VRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLV 82 (264)
Q Consensus 43 ~rr~~g~Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv 82 (264)
.||+...|--.|.-=.-|..+.|.+...-.|-.|.|.+.+
T Consensus 231 dRrLs~~~~v~V~vLSTf~~R~~~lAD~~iiF~P~~DLai 270 (930)
T TIGR01706 231 DRRLSNHPKVKVVVLSTFTHRSFDLADIGIIFKPQTDLAI 270 (930)
T ss_pred CCCCCCCCCEEEEEEECCCCCCHHHCCCCEEECCCCCHHH
T ss_conf 1003778841689863123320222277402358841778
No 402
>PRK06138 short chain dehydrogenase; Provisional
Probab=41.73 E-value=6.5 Score=19.88 Aligned_cols=72 Identities=26% Similarity=0.180 Sum_probs=45.0
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222---------2---100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~ 164 (264)
..+|=-|.++| |+.++++.+ .+++|..+|.+.++++-..+.... ..++.+++.|+-+. . -++
T Consensus 6 KvalVTGas~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 81 (252)
T PRK06138 6 RVAIVTGAGSG-IGRATAKLFAREGARVVVADRDAEAAERVAAAIAA---GGRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC---CCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 88999474679-99999999998799899996887899999999837---991999994289999999999999998299
Q ss_pred HHHHHHCCHH
Q ss_conf 2333201133
Q gi|254780875|r 165 FDVIVSNPPY 174 (264)
Q Consensus 165 fD~IvsNPPY 174 (264)
.|++|.|-=+
T Consensus 82 iDiLVNNAG~ 91 (252)
T PRK06138 82 LDVLVNNAGF 91 (252)
T ss_pred CCEEEECCCC
T ss_conf 9899989889
No 403
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=41.08 E-value=6.2 Score=20.03 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
++..+|=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+..+..+. ++.++..|+.+. . .
T Consensus 13 ~gK~alITGgs~G-IG~~ia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 89 (259)
T PRK06124 13 AGQVALVTGSARG-LGLEIARALAEAGAHVLVNGRNAARVEAAVAALRAAGG--AAEALVFDISDEEAVAAAFARIDAEH 89 (259)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9998999286748-99999999998799999996988999999999996599--58999951799999999999999975
Q ss_pred CHHHHHHHCCHH
Q ss_conf 002333201133
Q gi|254780875|r 163 GLFDVIVSNPPY 174 (264)
Q Consensus 163 ~~fD~IvsNPPY 174 (264)
++.|++|.|=-+
T Consensus 90 g~iDiLVnnAG~ 101 (259)
T PRK06124 90 GRLDILVNNVGA 101 (259)
T ss_pred CCCCEEEECCCC
T ss_conf 999799989888
No 404
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=40.87 E-value=10 Score=18.52 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=50.2
Q ss_pred CCCCCCCCCCCCCC--CHH-HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 22222222222221--002-333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 149 RFDTLQSDWFSSVE--GLF-DVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 149 ~i~~~~~d~~~~~~--~~f-D~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
++++.++|+.+-+. ..= |+|.|-|||.+.+.... -..| +.+.+ ..+..+++++.+.++=.+.|..++
T Consensus 156 ~~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~s~t~~----f~~Y--~~~~f----~~~~~~~La~~~~~l~~~~~i~~~ 225 (274)
T COG0338 156 NATIENGDFEEVLADADSGDDFVYCDPPYLPLSATSN----FTAY--GGNGF----TEDQHLRLAEVLKELEGKRGISVL 225 (274)
T ss_pred CCEEECCCHHHHHHHCCCCCCEEEECCCCCCCCCCCC----CCCC--CCCCC----CHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 0928717899998613678818995899874334343----3445--67888----869999999999963545507996
Q ss_pred EECCCHHHHHHHHHHHCC-CCEEEEEECCC
Q ss_conf 817667999999999789-80589980568
Q gi|254780875|r 226 EIGYNQKVDVVRIFESRK-LFLVNAFKDYG 254 (264)
Q Consensus 226 Eig~~q~~~v~~ll~~~g-f~~v~~~kD~~ 254 (264)
+... -.+...++.+... +..+...++.+
T Consensus 226 ~sn~-~~~~~~~ly~~~~q~~~~~~kr~~~ 254 (274)
T COG0338 226 DSNS-DTEETRELYKQFAQIGLVKAKRSIS 254 (274)
T ss_pred CCCC-CHHHHHHHHHHHHHHEEEEEEEEHH
T ss_conf 1676-3087899887644332211133011
No 405
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.85 E-value=11 Score=18.26 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=51.1
Q ss_pred HHHHHCCCCCCCCCCCCCCC-----CCCCCCCCCHHH--HHHHCCH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 24442011000122222222-----222222210023--3320113-332100122111112357543321011232102
Q gi|254780875|r 135 EIAKSNAVTNGVSERFDTLQ-----SDWFSSVEGLFD--VIVSNPP-YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHY 206 (264)
Q Consensus 135 ~~A~~N~~~~~~~~~i~~~~-----~d~~~~~~~~fD--~IvsNPP-YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~ 206 (264)
++.-+|+.++|+.-.+.++. .++.+.....|. +-|-||| +|..+.+..+..-..+.+...-..-|+.-|
T Consensus 43 DvvT~n~~~~gl~P~l~ivD~KT~R~~~~~~~~~~~~~~i~V~NpPGtIt~el~~ai~~a~~~~k~~~I~V~GEEDL--- 119 (167)
T COG1909 43 DVVTRNLIEVGLIPDLAIVDGKTKRREPVDQNRIVFKRVIKVRNPPGTITFELIKAIEKALEDGKRVRIFVDGEEDL--- 119 (167)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHCCCCEEEEEECHHHH---
T ss_conf 58789999838977578763642136620210123444899738996767999999999986699379998171677---
Q ss_pred HHHHHHHHHHCCCCCEEEE-----------EECCCHHHHHHHHHHHC
Q ss_conf 5689999985378878999-----------81766799999999978
Q gi|254780875|r 207 RTIADGVSRHLNKDGLCSV-----------EIGYNQKVDVVRIFESR 242 (264)
Q Consensus 207 ~~ii~~~~~~L~~~G~l~l-----------Eig~~q~~~v~~ll~~~ 242 (264)
+....-++.|-|+.++ -........+.++|++.
T Consensus 120 ---a~lp~i~~ap~~tvV~YGqP~~GvV~l~V~~~~k~~v~~ll~k~ 163 (167)
T COG1909 120 ---AVLPAILYAPLGTVVLYGQPDEGVVALRVTEELKEEVLELLAKM 163 (167)
T ss_pred ---HHHHHHHHCCCCCEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf ---77679862699988996799973899995278789999999974
No 406
>PRK05875 short chain dehydrogenase; Provisional
Probab=40.84 E-value=6.4 Score=19.91 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=39.9
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCC-CCCCCCCCCCCCCCC------------CCC
Q ss_conf 605664214211233122223--33210013332220024442011000-122222222222222------------210
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNG-VSERFDTLQSDWFSS------------VEG 163 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~-~~~~i~~~~~d~~~~------------~~~ 163 (264)
..+|=-|.++| |+.++|..+ .+++|+.++.+++.++-+.+.....+ -...+.++..|+-+. ..+
T Consensus 8 K~alVTGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~~~~~~v~~~~~Dvs~~~~v~~~v~~~~~~~g 86 (277)
T PRK05875 8 RTYLVTGGGSG-IGKGVAAALVAAGAAVMIVGRNPDKLAAAAEEIEALAGGAGAVRYEPADVTNEDEVARAVDAATAWHG 86 (277)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 98999488749-99999999998799899997988999999999996127886289995789999999999999999849
Q ss_pred HHHHHHHCC
Q ss_conf 023332011
Q gi|254780875|r 164 LFDVIVSNP 172 (264)
Q Consensus 164 ~fD~IvsNP 172 (264)
+.|.+|.|-
T Consensus 87 ~iD~LVnnA 95 (277)
T PRK05875 87 RLHGVVHCA 95 (277)
T ss_pred CCEEEEECC
T ss_conf 953999878
No 407
>pfam02086 MethyltransfD12 D12 class N6 adenine-specific DNA methyltransferase.
Probab=40.43 E-value=8.1 Score=19.23 Aligned_cols=86 Identities=9% Similarity=0.015 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCEEE
Q ss_conf 2222222222222---1002333201133321001221111123575433210112321025689999985378-87899
Q gi|254780875|r 149 RFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNK-DGLCS 224 (264)
Q Consensus 149 ~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~-~G~l~ 224 (264)
++++.+.|+.+.+ +.+-|+|-+.|||.+.+..... ..|. .-.| +...-.++.+...++.+. +|.++
T Consensus 158 ~~~i~~~d~~~~i~~~~~~~dfvYlDPPY~~~~~~~~~----~~y~--~~~f----~~~dh~~L~~~l~~~~~~~~~k~~ 227 (254)
T pfam02086 158 GATIECGDFDAVLLAANISDDFVYLDPPYNPRQYTSNY----TGYN--TIAF----SDEDQVRLATVLKSLSSKFGVKFL 227 (254)
T ss_pred CCEEEECCHHHHHHHCCCCCCEEEECCCCCCCCCCCCC----CCCC--CCCC----CHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99899889999996427889689978998766677665----5635--6899----989999999999987623698899
Q ss_pred EEECCCHHHHHHHHHHHCCCCEEE
Q ss_conf 981766799999999978980589
Q gi|254780875|r 225 VEIGYNQKVDVVRIFESRKLFLVN 248 (264)
Q Consensus 225 lEig~~q~~~v~~ll~~~gf~~v~ 248 (264)
+-. +-.+.+.++.+. |...+
T Consensus 228 lS~--~d~~~ir~ly~~--~~i~~ 247 (254)
T pfam02086 228 LSN--SDTKLFRELYLS--FSILE 247 (254)
T ss_pred EEE--CCCHHHHHHHCC--CCEEE
T ss_conf 994--799899998569--97589
No 408
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.27 E-value=4.3 Score=21.03 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=42.4
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
+..+|=.|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+.... .++.++..|+.+. . -+
T Consensus 6 gK~alITGgs~G-IG~aia~~la~~G~~V~i~~r~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 80 (250)
T PRK07231 6 GKVAIVTGAGSG-FGEGIARRFAAEGARVVVTDRNQEAAERVAAEIRG----GRAIAVAADVSDEADVRAAVEAALERFG 80 (250)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC----CCEEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 988999388868-99999999998799999997988999999998449----9679999307999999999999999819
Q ss_pred HHHHHHHCC
Q ss_conf 023332011
Q gi|254780875|r 164 LFDVIVSNP 172 (264)
Q Consensus 164 ~fD~IvsNP 172 (264)
+.|++|.|-
T Consensus 81 ~iD~lInnA 89 (250)
T PRK07231 81 SVDILVNNA 89 (250)
T ss_pred CCCEEEECC
T ss_conf 971999888
No 409
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=39.50 E-value=29 Score=15.58 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=40.1
Q ss_pred CCCCCCCCCCC--CCC-CCCCCHH-----HHHHH----HHHHCCCCCEEEEEECCC--HH-HHHHHHHHHCCCCEE
Q ss_conf 12357543321--011-2321025-----68999----998537887899981766--79-999999997898058
Q gi|254780875|r 187 VRDFDPRISLD--GGI-DGLSHYR-----TIADG----VSRHLNKDGLCSVEIGYN--QK-VDVVRIFESRKLFLV 247 (264)
Q Consensus 187 v~~~EP~~AL~--gg~-dGl~~~~-----~ii~~----~~~~L~~~G~l~lEig~~--q~-~~v~~ll~~~gf~~v 247 (264)
.++|.|+++-| +-- +|...+. ..++. ..+.-+.||.++| +|.. |+ +-|.+.+++.|-..|
T Consensus 18 tRRWNPkMk~fIf~eRKngihIIDL~kT~~~~~~Ay~~v~~~~~~gg~iLF-VGTKNkQA~~~i~~~A~r~g~~YV 92 (227)
T TIGR01011 18 TRRWNPKMKPFIFGERKNGIHIIDLQKTLQLLEEAYNFVREVVANGGKILF-VGTKNKQAKEIIKEEAERCGMFYV 92 (227)
T ss_pred ECCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCEEEE-EECHHHHHHHHHHHHHHHCCCCEE
T ss_conf 223688898855320127851225789999999999999999981995888-516588999999999987489621
No 410
>PRK12744 short chain dehydrogenase; Provisional
Probab=39.48 E-value=6.9 Score=19.72 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=58.2
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCH-HHHHHC---CCCCCCCCCCCCCCCCCCCC---------C
Q ss_conf 68605664214211233122223--332100133322200-244420---11000122222222222222---------2
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKAL-EIAKSN---AVTNGVSERFDTLQSDWFSS---------V 161 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al-~~A~~N---~~~~~~~~~i~~~~~d~~~~---------~ 161 (264)
++..+|=-|.++| |+.++|+.+ .+++|+.+|.+.+.. +.+.+. .+..+ .++.++++|+-+. .
T Consensus 7 ~gKvalVTGgs~G-IG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~ 83 (257)
T PRK12744 7 KGKVVLIAGGAKN-LGGLIARDLAAQGAKAVAIHYNSAATKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9998999288758-99999999998799899993787436899999999999739--92899976889999999999999
Q ss_pred ---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf ---1002333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 162 ---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 162 ---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
-++.|++|.|--......+.+++.+ .|+-...+. +.-.-.+++.+..+|+++|.++.
T Consensus 84 ~~~~G~iDilVnnAG~~~~~~~~~~~~~--~~~~~~~vN-----~~~~~~~~~~~~~~m~~~G~ii~ 143 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLKKPIVEISEA--EYDEMFAVN-----SKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHCCCCCEEEECCCCCCCCCHHHCCHH--HHHHHHHHH-----HHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9980998899976644567723332288--888898888-----76699999999998741894999
No 411
>PRK06701 short chain dehydrogenase; Provisional
Probab=39.06 E-value=6.8 Score=19.76 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCC-CHHHHHHCCCCCCCCCCCCCCCCCCCCCC----------
Q ss_conf 2468605664214211233122223--3321001333222-00244420110001222222222222222----------
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCK-ALEIAKSNAVTNGVSERFDTLQSDWFSSV---------- 161 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~-al~~A~~N~~~~~~~~~i~~~~~d~~~~~---------- 161 (264)
+.++..+|=-|.++| |+.++|+.+ .+++|.-++.+.+ ..+.+.+-.+.+|. ++.++++|+-+.-
T Consensus 42 rL~GKvalVTGgs~G-IG~aiA~~la~~GA~V~i~~~~~~~~a~~~~~~~~~~G~--~~~~~~~Dv~d~~~v~~~v~~~~ 118 (289)
T PRK06701 42 KLKGKVALITGGDSG-IGRAVAVAFAKEGADIAIVYLDEHEDANETKQRVEKEGV--KCLLIPGDVSDEQFCKDAVEETV 118 (289)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 779998999682579-999999999987998999828946789999999996399--08999847899999999999999
Q ss_pred --CCHHHHHHHCCHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf --100233320113332-1001221111123575433210112321025689999985378878999
Q gi|254780875|r 162 --EGLFDVIVSNPPYIE-SVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 162 --~~~fD~IvsNPPYI~-~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
-++.|++|.|==+-. ...+..+..+ .|+--. .- -+.-.-.+.+.+..+|+++|-++.
T Consensus 119 ~~fG~iDiLVNNAG~~~~~~~~~~~~~~--~~~~~~--~v---Nl~g~f~~~~~~~p~m~~gg~IIn 178 (289)
T PRK06701 119 RELGRLDILVNNAAQQYPQQSLEDITAE--QLDKTF--RT---NIYSYFHMTKAALPHLKPGSAIIN 178 (289)
T ss_pred HHHCCCCEEEECCCCCCCCCCHHHCCHH--HHHHHH--HH---HHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9859998999888346788872449999--999997--45---217899999999999734977999
No 412
>TIGR02294 nickel_nikA nickel ABC transporter, periplasmic nickel-binding protein; InterPro: IPR011980 Members of this family are periplasmic nickel-binding proteins of nickel ABC transporters. Nickel is bound specifically, albeit weakly, through water molecules positioned in the binding site. The amino acids whose side chains line the binding site include Tyr-44, Met-49, Trp-122, Arg-159, Trp-420, and Tyr-424 (numbering based on the precursor sequence of Escherichia coli NikA) with the Arg contributing a hydrogen bond indirectly through a water molecule ..
Probab=38.83 E-value=13 Score=17.97 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE--CCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHCCCC--CCC
Q ss_conf 0512235655531012332110124686056642--142112331222233321001333222-00244420110--001
Q gi|254780875|r 72 FEPRPETELLVDSALAFSLPRIEKRDVVRILDLG--TGTGAVCLALLKESPFFKGVGVDISCK-ALEIAKSNAVT--NGV 146 (264)
Q Consensus 72 LIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG--~GsG~i~i~la~~~~~~~v~~~Dis~~-al~~A~~N~~~--~~~ 146 (264)
.||=|+|-.|.-. ..+- =|=-| -|+|.|++--..++....-+.+++|.- +-..---|..+ ..+
T Consensus 204 VIPD~~TR~LAfe----------~Ge~--dLi~G~~rGtG~i~~DtF~ql~~~~~Y~t~lS~P~~Tr~L~lNt~~kd~~~ 271 (513)
T TIGR02294 204 VIPDAETRALAFE----------SGEV--DLIFGNERGTGVIDLDTFAQLKEDGKYQTALSQPMETRMLLLNTGKKDEAT 271 (513)
T ss_pred EECCHHHHHHHHH----------CCCC--CEEECCCCCCCCCCHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCCHH
T ss_conf 7367336888763----------1861--023236656740142257763128773201047511245433220102200
Q ss_pred C---CCCCCCCC--------CCCCCCCCHHHHHHH-CCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2---22222222--------222222100233320-1133321001221111123575433
Q gi|254780875|r 147 S---ERFDTLQS--------DWFSSVEGLFDVIVS-NPPYIESVIVDCLGLEVRDFDPRIS 195 (264)
Q Consensus 147 ~---~~i~~~~~--------d~~~~~~~~fD~Ivs-NPPYI~~~~~~~l~~~v~~~EP~~A 195 (264)
. .|--+-++ +.+...+.+-|-|+| |-||+.-. |.| ..|+|..|
T Consensus 272 ~Dl~VR~A~nhavnK~~i~~~~l~G~E~~AD~lFa~n~py~d~~----l~P--~~YD~~kA 326 (513)
T TIGR02294 272 SDLAVRQALNHAVNKQAIIKNILYGLEKPADTLFAKNVPYADID----LKP--YKYDVKKA 326 (513)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHCCCCCCCCCCC----CCC--CCCCHHHH
T ss_conf 02689999740347689987764177600233124788735688----888--65687999
No 413
>PRK05717 oxidoreductase; Validated
Probab=38.75 E-value=4.6 Score=20.83 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222------------2100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~~ 164 (264)
..+|=-|.++ -|+.++++++ .+++|+..|.+++..+-..+- . ..+..++..|+-+. --++
T Consensus 11 KvalITG~s~-GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~---~--~~~~~~~~~Dvt~~~~v~~~i~~~~~~~G~ 84 (255)
T PRK05717 11 RVALVTGAAR-GIGLGIAAWLIAEGWQVVLADLDRERGAKVAKA---L--GENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred CEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---H--CCCEEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 8899958788-899999999998799899996988999999998---4--897589993079999999999999998299
Q ss_pred HHHHHHCC
Q ss_conf 23332011
Q gi|254780875|r 165 FDVIVSNP 172 (264)
Q Consensus 165 fD~IvsNP 172 (264)
.|++|.|=
T Consensus 85 id~lvnNA 92 (255)
T PRK05717 85 LDALVCNA 92 (255)
T ss_pred CCEEEECC
T ss_conf 98999877
No 414
>pfam05430 DUF752 Protein of unknown function (DUF752). This family contains several uncharacterized bacterial proteins with no known function.
Probab=38.70 E-value=30 Score=15.50 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 689999985378878999817667999999999789805899805689975999979
Q gi|254780875|r 208 TIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 208 ~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
.++....++++++|.+.- +.-+..|++-|.+.||. |+..+-+.++--+++++|
T Consensus 71 ~~f~~i~~~~~~~~~l~T---ys~a~~Vr~~L~~aGF~-v~k~~G~g~KR~ml~a~k 123 (124)
T pfam05430 71 EFFALLARRSKPGGTLAT---YSSAGFVRRGLIAAGFH-VGKRPGFGRKREMLVASK 123 (124)
T ss_pred HHHHHHHHHHCCCCEEEE---EECCHHHHHHHHHCCCE-EEECCCCCCCCCCEEEEC
T ss_conf 999999997268988998---75568999999987988-997898998877768859
No 415
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=38.68 E-value=6.6 Score=19.82 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=45.7
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
+..+|=-|.++| |+.++|..+ .+++|+.+|.+++.++-+.+-....+ .++..+.+|+-+. . -+
T Consensus 7 gKvalVTGgs~G-IG~a~A~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~v~~~~~~~G 83 (262)
T PRK13394 7 GKTAVVTGAASG-IGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 998999585778-9999999999879999999798899999999999629--9399998158999999999999999819
Q ss_pred HHHHHHHCCH
Q ss_conf 0233320113
Q gi|254780875|r 164 LFDVIVSNPP 173 (264)
Q Consensus 164 ~fD~IvsNPP 173 (264)
+.|++|.|--
T Consensus 84 ~iDiLVnnAG 93 (262)
T PRK13394 84 SVDILVSNAG 93 (262)
T ss_pred CCCEEEECCC
T ss_conf 9999998998
No 416
>PRK12829 short chain dehydrogenase; Provisional
Probab=38.40 E-value=9.2 Score=18.89 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=44.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
-++..+|=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+-... .++..+..|+-+. .
T Consensus 9 L~GKvalVTGgs~G-IG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~----~~~~~~~~Dvt~~~~v~~~v~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGASG-IGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG----AKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC----CCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99997999473768-99999999998799899997998999999997479----97599996289999999999999997
Q ss_pred CCHHHHHHHCCH
Q ss_conf 100233320113
Q gi|254780875|r 162 EGLFDVIVSNPP 173 (264)
Q Consensus 162 ~~~fD~IvsNPP 173 (264)
-++.|++|.|-=
T Consensus 84 ~G~iDiLVNNAG 95 (264)
T PRK12829 84 FGGLDVLVNNAG 95 (264)
T ss_pred CCCCCEEEECCC
T ss_conf 399989998998
No 417
>KOG2539 consensus
Probab=38.35 E-value=4.9 Score=20.68 Aligned_cols=86 Identities=15% Similarity=-0.036 Sum_probs=49.0
Q ss_pred HHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHCCCC--CCCCCCCCCCC---C
Q ss_conf 31012332110124686056642142112331222233--32100133322200244420110--00122222222---2
Q gi|254780875|r 83 DSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP--FFKGVGVDISCKALEIAKSNAVT--NGVSERFDTLQ---S 155 (264)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~--~~~v~~~Dis~~al~~A~~N~~~--~~~~~~i~~~~---~ 155 (264)
-.+++.+..+..+..+-.+.|+|.|.|.-.-++-..+. .-.++.||-|..+.+.+.+|... +..+ +.+.. -
T Consensus 186 ~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~--~~v~~~~~~ 263 (491)
T KOG2539 186 TRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGE--PIVRKLVFH 263 (491)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCHHHCCC--HHCCCCCHH
T ss_conf 989999851072117079999874315551035343002122067632555888888876247333275--021553201
Q ss_pred CCCCCC--CCHHHHHHH
Q ss_conf 222222--100233320
Q gi|254780875|r 156 DWFSSV--EGLFDVIVS 170 (264)
Q Consensus 156 d~~~~~--~~~fD~Ivs 170 (264)
+-+-+. .+.||+++|
T Consensus 264 r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539 264 RQRLPIDIKNGYDLVIC 280 (491)
T ss_pred CCCCCCCCCCCEEEEEE
T ss_conf 01278885553236886
No 418
>PRK08643 acetoin reductase; Validated
Probab=38.17 E-value=6.7 Score=19.80 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=42.5
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCCHHH
Q ss_conf 5664214211233122223--33210013332220024442011000122222222222222------------210023
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEGLFD 166 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~~fD 166 (264)
+|=-|.++| |+.++++.+ .+++|..+|++.+.++-+.+.....+- +...++.|+-+. .-++.|
T Consensus 5 alVTGg~~G-IG~aia~~la~~Ga~V~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iD 81 (256)
T PRK08643 5 ALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAKAAADKLSSDGG--KAIAVKADVSNRDQVFDAVQQVVDTFGDLN 81 (256)
T ss_pred EEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999575788-99999999998799999996988999999999985399--099998058999999999999999829987
Q ss_pred HHHHCCH
Q ss_conf 3320113
Q gi|254780875|r 167 VIVSNPP 173 (264)
Q Consensus 167 ~IvsNPP 173 (264)
++|.|==
T Consensus 82 iLVNnAG 88 (256)
T PRK08643 82 VVVNNAG 88 (256)
T ss_pred EEEECCC
T ss_conf 9998998
No 419
>PRK06841 short chain dehydrogenase; Provisional
Probab=37.69 E-value=9.2 Score=18.89 Aligned_cols=71 Identities=18% Similarity=0.066 Sum_probs=43.4
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
++..+|=-|.++| |+.++|+.+ .+++|+.+|++++..+.+.+- . ..++..+..|+-+. . -
T Consensus 14 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~d~~~~~~~~~~~~---~--~~~~~~~~~Dvt~~~~v~~~v~~~~~~~ 87 (255)
T PRK06841 14 SGKVAVVTGGASG-IGHAIAELFAAKGARVALLDRSEDVAEVAAQL---L--GGNAKGLVCDVSDSQSVEAAVAAAISAF 87 (255)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---C--CCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9999999796778-99999999998799999996987899999984---5--9966999984699999999999999981
Q ss_pred CHHHHHHHCCH
Q ss_conf 00233320113
Q gi|254780875|r 163 GLFDVIVSNPP 173 (264)
Q Consensus 163 ~~fD~IvsNPP 173 (264)
++.|++|.|-=
T Consensus 88 g~iDiLVNNAG 98 (255)
T PRK06841 88 GRIDILVNSAG 98 (255)
T ss_pred CCCCEEEECCC
T ss_conf 99879998997
No 420
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=37.69 E-value=31 Score=15.40 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=48.7
Q ss_pred HHHHH-HHCCHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---CCCCCEEEE--EECC--CH---
Q ss_conf 02333-2011333210-01221111123575433210112321025689999985---378878999--8176--67---
Q gi|254780875|r 164 LFDVI-VSNPPYIESV-IVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRH---LNKDGLCSV--EIGY--NQ--- 231 (264)
Q Consensus 164 ~fD~I-vsNPPYI~~~-~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~---L~~~G~l~l--Eig~--~q--- 231 (264)
-||+= +-||=|++.- .+..++++|.+|= .+-.+-.+||..+......+ ++.+|.-++ -||. +|
T Consensus 183 VFDVRfLPNP~y~peLRp~tG~d~~V~dYv-----~~~~e~~ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRS 257 (286)
T COG1660 183 VFDVRFLPNPHYDPELRPLTGLDKPVADYV-----MSQPEVEEFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRS 257 (286)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH
T ss_conf 777531699766642475779980489998-----759579999999999999986899865974999997147986205
Q ss_pred ---HHHHHHHHHHCCCCEEE-EEECCC
Q ss_conf ---99999999978980589-980568
Q gi|254780875|r 232 ---KVDVVRIFESRKLFLVN-AFKDYG 254 (264)
Q Consensus 232 ---~~~v~~ll~~~gf~~v~-~~kD~~ 254 (264)
++.+.+.+++.|...+. .++|+.
T Consensus 258 V~iae~La~~l~~~~~~~v~v~HRd~~ 284 (286)
T COG1660 258 VYIAEQLAEYLRARGKYNVQVRHRDLE 284 (286)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf 899999999998436722777533321
No 421
>PRK06179 short chain dehydrogenase; Provisional
Probab=37.69 E-value=6.9 Score=19.68 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=8.8
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 246860566421421123
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVC 112 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~ 112 (264)
+...-+|+-+++.+|..+
T Consensus 121 ~~~~G~IvnisS~~g~~~ 138 (270)
T PRK06179 121 AQGSGRIINISSVLGFLP 138 (270)
T ss_pred CCCCCEEEEECCHHHHCC
T ss_conf 179958999868566277
No 422
>KOG0023 consensus
Probab=37.47 E-value=18 Score=16.98 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=37.5
Q ss_pred CCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCHHHHH
Q ss_conf 6860566421-42112331222233321001333222002444201100012222222-222222221002333
Q gi|254780875|r 97 DVVRILDLGT-GTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTL-QSDWFSSVEGLFDVI 168 (264)
Q Consensus 97 ~~~~vLDlG~-GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~-~~d~~~~~~~~fD~I 168 (264)
+..++-=.|. |-|.+++-.|+.. +.+|+++|-+...=+-| .+.+|.+.-+.+. ..|+.+...+..|.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea---~~~LGAd~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023 181 PGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEA---IKSLGADVFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH-CCEEEEEECCCHHHHHH---HHHCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf 986898855764016899999870-86799992785348999---98549621588427878999998752675
No 423
>PRK08339 short chain dehydrogenase; Provisional
Probab=37.37 E-value=4 Score=21.29 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=40.8
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C--CCHHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222---------2--10023
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--EGLFD 166 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--~~~fD 166 (264)
.+|=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+.....+ ..++.++..|+.+. + .+..|
T Consensus 10 ~alITG~s~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~g~~d 87 (263)
T PRK08339 10 LAFTTASSKG-IGFGVARVLARAGADVIILSRNEENLKRAKEKIKSES-DVEVHYIVADLTKREDLERTVKELKNIGDPD 87 (263)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8999162609-9999999999869999999798899999999998504-9857999848999999999999999569998
Q ss_pred HHHHCCHH
Q ss_conf 33201133
Q gi|254780875|r 167 VIVSNPPY 174 (264)
Q Consensus 167 ~IvsNPPY 174 (264)
++|.|--+
T Consensus 88 ilv~nag~ 95 (263)
T PRK08339 88 IFFFSTGG 95 (263)
T ss_pred EEEECCCC
T ss_conf 99989999
No 424
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.70 E-value=9.3 Score=18.84 Aligned_cols=39 Identities=13% Similarity=-0.062 Sum_probs=14.8
Q ss_pred CEEEEECCCC-CCCCCCCCCC--CCCCCCCCCCCCCCHHHHH
Q ss_conf 0566421421-1233122223--3321001333222002444
Q gi|254780875|r 100 RILDLGTGTG-AVCLALLKES--PFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 100 ~vLDlG~GsG-~i~i~la~~~--~~~~v~~~Dis~~al~~A~ 138 (264)
++|=.|+|+| -|+.++|+.+ .+++|..++.++...+.++
T Consensus 9 ~alITGaa~~~GIG~aiA~~La~~GA~V~i~~~~e~~~~~~~ 50 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGDALGKRVK 50 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 799979999854999999999986999999818668899999
No 425
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=36.30 E-value=33 Score=15.25 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHHHHCCCC
Q ss_conf 0256899999853788789---9981766799999999978980
Q gi|254780875|r 205 HYRTIADGVSRHLNKDGLC---SVEIGYNQKVDVVRIFESRKLF 245 (264)
Q Consensus 205 ~~~~ii~~~~~~L~~~G~l---~lEig~~q~~~v~~ll~~~gf~ 245 (264)
.++.+++...+.+.-||.+ .+|+--+|.+.+.++|.+.||.
T Consensus 27 ~lk~l~k~LKk~~gcGGtvk~~~IelQGD~R~~i~~~L~~~G~~ 70 (77)
T cd00474 27 DLKKLAKELKKKCACGGTVKDEVIELQGDQRKKIKEFLIKMGFA 70 (77)
T ss_pred HHHHHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHHHCCCC
T ss_conf 99999999888643880795399998281799999999984997
No 426
>PRK06182 short chain dehydrogenase; Validated
Probab=36.29 E-value=8.3 Score=19.18 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=10.6
Q ss_pred CCCCCCCEEEEECCCCCCCC
Q ss_conf 12468605664214211233
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCL 113 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i 113 (264)
.+....+|+-+++-+|-.+.
T Consensus 121 ~~~~~G~IvnisS~ag~~~~ 140 (273)
T PRK06182 121 RAQRSGRIINITSMGGKIYT 140 (273)
T ss_pred CCCCCCEEEEECCHHHCCCC
T ss_conf 14899589998684440779
No 427
>PRK07776 consensus
Probab=36.20 E-value=9.3 Score=18.86 Aligned_cols=70 Identities=20% Similarity=0.120 Sum_probs=42.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222------------210
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~ 163 (264)
+..+|=-|.++| |+.++|+.+ .+++|+.+|.+++.++-+.+.... .+...+.+|+-+. .-+
T Consensus 8 gKv~lITG~~~G-IG~aiA~~la~~Ga~V~i~~~~~~~l~~~~~~l~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 82 (252)
T PRK07776 8 GRTAIVTGASRG-IGLAIAQALAAAGANVVITARKQEALDEAAAQLGA----ERALGVAGHAVDEEHAREAVDLTLERFG 82 (252)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC----CCEEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 998999477879-99999999998799899997988999999998479----9579999742899999999999999849
Q ss_pred HHHHHHHCC
Q ss_conf 023332011
Q gi|254780875|r 164 LFDVIVSNP 172 (264)
Q Consensus 164 ~fD~IvsNP 172 (264)
+.|++|.|-
T Consensus 83 ~iDilVnNA 91 (252)
T PRK07776 83 SVDILVNNA 91 (252)
T ss_pred CCCEEEECC
T ss_conf 986999878
No 428
>PRK06057 short chain dehydrogenase; Provisional
Probab=35.93 E-value=10 Score=18.54 Aligned_cols=69 Identities=20% Similarity=0.024 Sum_probs=41.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
++..+|=-|.++| |+.++|+.+ .+++|+.+|++++..+.+.+... ..+++.|+-+. . .
T Consensus 6 ~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~d~~~~~~~~~~~~~~-------~~~~~~Dv~~~~~v~~~v~~~~~~~ 77 (255)
T PRK06057 6 AGRVAVITGGASG-IGLATARRMRAEGATVVVGDIDPEAGKAAADELG-------GLFVQVDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCC-------CEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9998999684888-9999999999869989999698899999998649-------9799981699999999999999981
Q ss_pred CHHHHHHHCCH
Q ss_conf 00233320113
Q gi|254780875|r 163 GLFDVIVSNPP 173 (264)
Q Consensus 163 ~~fD~IvsNPP 173 (264)
++.|++|.|--
T Consensus 78 G~iDiLVNnAG 88 (255)
T PRK06057 78 GSVDIAFNNAG 88 (255)
T ss_pred CCCCEEEECCC
T ss_conf 99878998885
No 429
>PRK06180 short chain dehydrogenase; Provisional
Probab=35.92 E-value=5.7 Score=20.22 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=11.2
Q ss_pred CCCCCCCCEEEEECCCCCCCC
Q ss_conf 012468605664214211233
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCL 113 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i 113 (264)
...+..-+|+-+++.+|.++.
T Consensus 124 m~~~~~G~IvnisS~ag~~~~ 144 (277)
T PRK06180 124 MRARRRGHIVNITSMGGLITM 144 (277)
T ss_pred HHHCCCCEEEEECCHHHCCCC
T ss_conf 896589657753546652579
No 430
>PRK07806 short chain dehydrogenase; Provisional
Probab=35.73 E-value=21 Score=16.58 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=51.9
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCC-CHH-HHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 8605664214211233122223--3321001333222-002-4442011000122222222222222---------2---
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCK-ALE-IAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~-al~-~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
...+|=-|.++| |+.++|+.+ .+++|...+.+.. ..+ ++++ +...|. +...++.|+-+. .
T Consensus 6 gKvalVTGas~G-IG~aiA~~la~~Ga~Vvi~~~~~~~~a~~~~~~-i~~~g~--~a~~~~~Dvtd~~~v~~l~~~~~~~ 81 (248)
T PRK07806 6 GKIALVTGSSRG-IGAEVAKYLAGAGAHVVVNYRNKAARAEKVVAE-IRAAGG--RASAVGADLTDEASVAALMDAIRAE 81 (248)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH-HHHCCC--EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 988999378859-999999999987998999838956899999999-996198--3999978999999999999999998
Q ss_pred CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 1002333201133321001221111123575433210112321025689999985378878999
Q gi|254780875|r 162 EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 162 ~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
-++.|++|.|--........ +..++.-- +.....+++.+..+++++|.+++
T Consensus 82 ~G~iDiLVnNAg~~~~~~~~----------~~~~~~~n---~~~~~~~~~~~~p~m~~gg~Ii~ 132 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMD----------PDYAMRLN---RDAQRRLLTLALPLMPAGSRVVF 132 (248)
T ss_pred CCCCCEEEECCCCCCCCCCC----------HHHHHHHH---HHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 49998999899998778997----------22689999---89999999999977504978999
No 431
>PRK06114 short chain dehydrogenase; Provisional
Probab=35.45 E-value=10 Score=18.63 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=44.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCC-CCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C--
Q ss_conf 468605664214211233122223--33210013332-220024442011000122222222222222---------2--
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDIS-CKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V-- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis-~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~-- 161 (264)
-++..+|=-|.++| |+.++|+.+ .+++|..+|.+ +++++-+.+-.+..+- ++.++..|+-+. .
T Consensus 14 L~gKvalVTGa~~G-IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~v~~~~~ 90 (262)
T PRK06114 14 LDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGR--RAIQIAADVTSKSDLAAAVARTEA 90 (262)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 89998999684789-999999999987998999958974699999999996599--589998168999999999999999
Q ss_pred -CCHHHHHHHCCH
Q ss_conf -100233320113
Q gi|254780875|r 162 -EGLFDVIVSNPP 173 (264)
Q Consensus 162 -~~~fD~IvsNPP 173 (264)
-++.|++|.|-=
T Consensus 91 ~~G~iDiLVNnAG 103 (262)
T PRK06114 91 ELGALTLAVNAAG 103 (262)
T ss_pred HCCCCCEEEECCC
T ss_conf 8199989998998
No 432
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase; InterPro: IPR006464 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. Members of this entry belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This entry covers prokaryotes and the archaea. It contains rimI, which catalyses the acetylation of the N-terminal alanine of ribosomal protein S18 .; GO: 0016407 acetyltransferase activity, 0006474 N-terminal protein amino acid acetylation.
Probab=35.14 E-value=34 Score=15.13 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCC--EEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 321011232102568999998537887--89998176679999999997898058998056899
Q gi|254780875|r 195 SLDGGIDGLSHYRTIADGVSRHLNKDG--LCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGN 256 (264)
Q Consensus 195 AL~gg~dGl~~~~~ii~~~~~~L~~~G--~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD~~g~ 256 (264)
|..+.-.|.-.=+.+++...+.++..| .++||+-.+-.. -.++-++.||..+.++|+|.-.
T Consensus 68 aV~pe~Qg~GiG~~LL~~L~~~~~~~~~~~~~LEVR~SN~~-A~~LY~k~GF~~~~~r~~YY~~ 130 (140)
T TIGR01575 68 AVKPEYQGQGIGRALLRELIKEAKGRGVNEIFLEVRVSNVA-AQALYKKLGFNEIAIRKNYYPD 130 (140)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH-HHHHHHHHCCEEECCCCCCCCC
T ss_conf 88712016637889999999998518983899846140689-9998777185010104356888
No 433
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=34.84 E-value=20 Score=16.62 Aligned_cols=66 Identities=23% Similarity=0.252 Sum_probs=44.6
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHC
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222221--002333201
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSN 171 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsN 171 (264)
.++..-.|+|.--|-..--|.++ +..|+++|.-+-|- +....| +|+-...|-|..-+ .+.|..||.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~-----sL~dtg---~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQ-----SLMDTG---QVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred CCCCEEEECCCCCCCCCHHHHHC--CEEEEEECCCHHHH-----HHHCCC---CEEEEECCCCCCCCCCCCCCEEEEE
T ss_conf 67865642266898622542315--60899943622226-----563266---5244413473036678877568752
No 434
>PRK08628 short chain dehydrogenase; Provisional
Probab=34.55 E-value=12 Score=18.16 Aligned_cols=71 Identities=20% Similarity=0.087 Sum_probs=40.8
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------------CCH
Q ss_conf 605664214211233122223--332100133322200244420110001222222222222222------------100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV------------EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~------------~~~ 164 (264)
..+|=-|.++| |+.++|+.+ .+++++.+|.++...+.+++ ....+ .++.++..|+-+.- .++
T Consensus 8 KvalVTG~s~G-IG~a~a~~la~~Ga~v~i~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dvs~~~~v~~~v~~~~~~~g~ 83 (258)
T PRK08628 8 KVVIVTGGASG-IGAAISLRLAEEGAIPVVFGRSAPDDEFAEE-LRALQ--PRAEFVQVDLQDDAQCRDAVAQTVAKFGR 83 (258)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCCHHHHHHH-HHHCC--CCEEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 98999277778-9999999999879989998088023999999-99539--97899995279999999999999998299
Q ss_pred HHHHHHCCH
Q ss_conf 233320113
Q gi|254780875|r 165 FDVIVSNPP 173 (264)
Q Consensus 165 fD~IvsNPP 173 (264)
.|++|.|-=
T Consensus 84 iDiLVnnAG 92 (258)
T PRK08628 84 IDGLVNNAG 92 (258)
T ss_pred CCEEEECCC
T ss_conf 889998882
No 435
>PRK08265 short chain dehydrogenase; Provisional
Probab=34.19 E-value=11 Score=18.27 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=32.5
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCCHH
Q ss_conf 05664214211233122223--33210013332220024442011000122222222222222------------21002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~~f 165 (264)
.+|=-|.++| |+.+++..+ .+++|+.+|.+.+..+...+.. ..++.++++|+-+. ..++.
T Consensus 8 valVTGgs~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~~~~fG~i 81 (261)
T PRK08265 8 VAIVTGGATL-IGAAVARALVAAGACVAILDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATAVARFGGL 81 (261)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-----CCCEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8999487768-999999999987998999979889999999981-----9972899813899999999999999981998
Q ss_pred HHHHHC
Q ss_conf 333201
Q gi|254780875|r 166 DVIVSN 171 (264)
Q Consensus 166 D~IvsN 171 (264)
|++|.|
T Consensus 82 DiLVNN 87 (261)
T PRK08265 82 DILVNL 87 (261)
T ss_pred CEEEEC
T ss_conf 789985
No 436
>pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis.
Probab=33.98 E-value=12 Score=18.02 Aligned_cols=29 Identities=28% Similarity=0.179 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 33122223332100133322200244420
Q gi|254780875|r 112 CLALLKESPFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 112 ~i~la~~~~~~~v~~~Dis~~al~~A~~N 140 (264)
+++|.+..+..+|+|+|.++..++.|.+.
T Consensus 2 Alalk~~~~~~~I~g~d~~~~~~~~A~~~ 30 (258)
T pfam02153 2 ALALRRKGFNVTVIGYDIDEEAAVAAVEL 30 (258)
T ss_pred HHHHHHCCCCCEEEEEECCHHHHHHHHHC
T ss_conf 28886169996799985999999999986
No 437
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=33.96 E-value=7.8 Score=19.34 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=36.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
++.++|=-|.++| |+.++|+++ .+++|+++|.+.+.+.- ..++..+..|+-+. . .
T Consensus 7 ~gK~alITG~s~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~----------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (253)
T PRK08220 7 SGKTVWVTGAAQG-IGYAVALAFVEAGAKVIGFDQAFEQLNE----------QYPFATFVLDVADAAAVAQVCQRLLAET 75 (253)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHC----------CCCEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 9998999588568-9999999999879999999788778748----------9977999973799999999999999973
Q ss_pred CHHHHHHHCCH
Q ss_conf 00233320113
Q gi|254780875|r 163 GLFDVIVSNPP 173 (264)
Q Consensus 163 ~~fD~IvsNPP 173 (264)
++.|++|.|-=
T Consensus 76 g~iDilVnnAG 86 (253)
T PRK08220 76 GPLDVLVNVAG 86 (253)
T ss_pred CCCCEEEECCC
T ss_conf 99888998998
No 438
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=33.88 E-value=36 Score=15.00 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHHHHCCCCE
Q ss_conf 0256899999853788789---99817667999999999789805
Q gi|254780875|r 205 HYRTIADGVSRHLNKDGLC---SVEIGYNQKVDVVRIFESRKLFL 246 (264)
Q Consensus 205 ~~~~ii~~~~~~L~~~G~l---~lEig~~q~~~v~~ll~~~gf~~ 246 (264)
.++.+.+...+.+.-||.+ .+|+--+|.+.+.++|.+.||..
T Consensus 51 ~lk~lak~LK~~~g~GGtvK~g~IeiQGD~r~ki~~~L~~~G~~v 95 (99)
T PRK00939 51 DLKELAKKLKSKLACGGTVKNGRIELQGDHRDRVKELLIEMGFSE 95 (99)
T ss_pred HHHHHHHHHHHHHCCCCEEECCEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 999999999897556962739999978826999999999869982
No 439
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=33.82 E-value=26 Score=15.95 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE
Q ss_conf 99999853788789998176679999999997898058
Q gi|254780875|r 210 ADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLV 247 (264)
Q Consensus 210 i~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v 247 (264)
++..+++|...|.-+=||.-+...+..+.+++.||.-+
T Consensus 12 CkmTKk~L~~~~i~Fe~inid~~pea~d~vk~lGF~~~ 49 (72)
T TIGR02194 12 CKMTKKALEEHGIAFEEINIDEQPEAVDYVKALGFRQV 49 (72)
T ss_pred CCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEC
T ss_conf 21577667637996157635888437899987486307
No 440
>TIGR00571 dam DNA adenine methylase; InterPro: IPR012326 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes . N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognize a specific sequence in DNA and methylate an adenine in that sequence. It has been shown , , , that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A . The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements . According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=33.66 E-value=16 Score=17.23 Aligned_cols=86 Identities=13% Similarity=0.200 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCC---CCHH-HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCC--CCCHHHHHHHHHHHC-CC
Q ss_conf 2222222222222---1002-3332011333210012211111235754332101--123--210256899999853-78
Q gi|254780875|r 149 RFDTLQSDWFSSV---EGLF-DVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGG--IDG--LSHYRTIADGVSRHL-NK 219 (264)
Q Consensus 149 ~i~~~~~d~~~~~---~~~f-D~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg--~dG--l~~~~~ii~~~~~~L-~~ 219 (264)
++.|.++|+...+ +... |+|-|-|||.+.+.- |-|.+ .+| .+.-.++ ....+.| +.
T Consensus 202 n~~f~c~~F~~~~~~~~~~sP~fVY~DPPY~p~~~~--------------~~Ft~Y~~~~F~~~~q~~L-a~~~~~l~~~ 266 (327)
T TIGR00571 202 NTTFLCGSFEKILEMVDRDSPDFVYLDPPYLPLSAT--------------ANFTGYHKNGFDEDEQKRL-ANFCKSLSDE 266 (327)
T ss_pred CCEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCCC--------------EEECCCCCCCCCHHHHHHH-HHHHHHHHHH
T ss_conf 815752566788623037888378757789985232--------------1311565578888999999-9999875453
Q ss_pred CCEEEEEECC-----CHH-HHHHHHHHHC---CCCEEEE
Q ss_conf 8789998176-----679-9999999978---9805899
Q gi|254780875|r 220 DGLCSVEIGY-----NQK-VDVVRIFESR---KLFLVNA 249 (264)
Q Consensus 220 ~G~l~lEig~-----~q~-~~v~~ll~~~---gf~~v~~ 249 (264)
.|..++.=.. +.. ..+.++.... ....|+.
T Consensus 267 rg~~~~~SN~~~~l~~~~~~~~~elY~~~~k~~~~~v~a 305 (327)
T TIGR00571 267 RGIKFLLSNSVRDLEDSSRIFIRELYRGFSKNNIKRVKA 305 (327)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 066047745645433653789998752233212047777
No 441
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.61 E-value=13 Score=17.86 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=11.7
Q ss_pred HCCCCHHHHCCCE---EEEEEE-EEEECCC
Q ss_conf 7498376853631---442376-7750462
Q gi|254780875|r 46 LKHESIHRILGWR---DFYNVR-LTLSSDT 71 (264)
Q Consensus 46 ~~g~Pl~YIlg~~---~F~~~~-f~v~~~v 71 (264)
..+.++.++.|.. .|-+.+ ..+.||+
T Consensus 50 ~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI 79 (501)
T PRK02006 50 AEGIDAEFVGGAFDPALLDGVELVALSPGL 79 (501)
T ss_pred HCCCCCEEECCCCCHHHHCCCCEEEECCEE
T ss_conf 608981897788986784689999989900
No 442
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=33.56 E-value=10 Score=18.58 Aligned_cols=70 Identities=20% Similarity=0.133 Sum_probs=41.2
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222---------2---100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~ 164 (264)
..+|=-|.++| |+.++|+.+ .+++|+.+|++++.++.+.+.. + .+..++..|+-+. . .++
T Consensus 6 KvalVTGas~G-IG~aia~~la~~Ga~V~i~d~~~~~~~~~~~~~---g--~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~ 79 (256)
T PRK07067 6 KVALLTGAASG-IGEAVAQRYLREGARVVLADIKPARAALAALEI---G--PAAVAVSLDVTRQDSIDRIVAAAVERFGG 79 (256)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---C--CCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 88999376778-999999999987999999979889999999981---9--97599998489999999999999998199
Q ss_pred HHHHHHCCHH
Q ss_conf 2333201133
Q gi|254780875|r 165 FDVIVSNPPY 174 (264)
Q Consensus 165 fD~IvsNPPY 174 (264)
.|++|.|-=.
T Consensus 80 iDiLVNNAGi 89 (256)
T PRK07067 80 IDILVNNAAL 89 (256)
T ss_pred CCEEEECCCC
T ss_conf 9899989988
No 443
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=33.40 E-value=9.3 Score=18.85 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=43.3
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHHH
Q ss_conf 5664214211233122223--33210013332220024442011000122222222222222---------2---10023
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLFD 166 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~fD 166 (264)
+|=-|+++| |+.++++.+ .+++|+.++.+.+............ ...++.++..|+-+. . .++.|
T Consensus 5 alITGas~G-IG~a~a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~v~~~~~~~g~iD 82 (245)
T PRK12824 5 ALVTGAKRG-IGSAIARELLADGYRVIATYFGNYDAAKDWFEEYGF-TEDQVRLKSLDVTDTEECQEALARIEEEEGPVD 82 (245)
T ss_pred EEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 999478888-999999999987998999958807789999998740-499389999138999999999999999749998
Q ss_pred HHHHCCHHHHHHCCCCCCC
Q ss_conf 3320113332100122111
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGL 185 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~ 185 (264)
++|.|--+-....+.+++.
T Consensus 83 iLVnnAG~~~~~~~~~~~~ 101 (245)
T PRK12824 83 ILVNNAGITRDSGFKRMSH 101 (245)
T ss_pred EEEECCCCCCCCCCHHCCH
T ss_conf 9998988899999023999
No 444
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1; InterPro: IPR005874 Cells have evolved elaborate mechanisms to rid themselves of aberrant proteins and transcripts. The nonsense-mediated mRNA decay pathway (NMD) is an example of a pathway that eliminates aberrant mRNAs. In addition to its role in recognition of the AUG codon during translation initiation and maintenance of the appropriate reading frame during translation elongation by directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met, the SUI1 protein plays a role in the NMD pathway.; GO: 0003743 translation initiation factor activity, 0006412 translation.
Probab=33.34 E-value=36 Score=14.95 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHCCCCCEEEE--EECC------CHHHHHHHHHHHCCCC
Q ss_conf 1025689999985378878999--8176------6799999999978980
Q gi|254780875|r 204 SHYRTIADGVSRHLNKDGLCSV--EIGY------NQKVDVVRIFESRKLF 245 (264)
Q Consensus 204 ~~~~~ii~~~~~~L~~~G~l~l--Eig~------~q~~~v~~ll~~~gf~ 245 (264)
..+++|++..++=++-||.++= |+|. +|...|.++|.+.+..
T Consensus 52 yd~kk~vk~LKK~f~CNGtvi~d~E~G~vIQLQGDQR~~v~~FL~~~~~~ 101 (111)
T TIGR01160 52 YDLKKIVKALKKEFACNGTVIEDPELGEVIQLQGDQRKNVCEFLIEEGLV 101 (111)
T ss_pred HCHHHHHHHHHHHHCCCCCEECCCCCCCEEECCCHHHHHHHHHHHHHCCC
T ss_conf 01024787752542379885406877614515213478899998873045
No 445
>PRK07578 short chain dehydrogenase; Provisional
Probab=33.22 E-value=5.2 Score=20.50 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=45.6
Q ss_pred CEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHH
Q ss_conf 056642142112331222233-3210013332220024442011000122222222222222210023332011333210
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKESP-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESV 178 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~ 178 (264)
|||=.|.+|| |+.++++.+. ...++.+..+...+.+ .+.+.-.+ ..+++.+ +++|.+|.|--.....
T Consensus 2 rVlVTGas~G-IG~aia~~la~~~~vv~~~r~~~~~~~--------Dvtd~~~v--~~~~~~~-G~iD~lVnnAG~~~~~ 69 (199)
T PRK07578 2 KILVIGASGT-IGRAVVAELSARHEVITAGRSSGDVQV--------DITDPASI--RALFEKV-GKVDAVVSAAGKVHFA 69 (199)
T ss_pred EEEEECCCCH-HHHHHHHHHHCCCCEEEEECCCCCEEE--------ECCCHHHH--HHHHHHH-CCCCEEEECCCCCCCC
T ss_conf 7999998748-999999999679998998368677568--------58899999--9999962-9998999887226798
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 01221111123575433210112321025689999985378878999
Q gi|254780875|r 179 IVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV 225 (264)
Q Consensus 179 ~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l 225 (264)
....++.+ +|+-.... --.| .-.+++.+..+|+++|.+++
T Consensus 70 ~~~~~~~e--~~~~~~~~--nl~g---~~~l~~~~~~~l~~gGsIv~ 109 (199)
T PRK07578 70 PLTEMTDE--DFQLGLQS--KLMG---QINLVLIGQEYLNDGGSFTL 109 (199)
T ss_pred CHHHCCHH--HHHHHHHH--HHHH---HHHHHHHHHHHHHCCCCCEE
T ss_conf 94879998--97778720--0138---99999999998760898568
No 446
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.90 E-value=37 Score=14.90 Aligned_cols=145 Identities=13% Similarity=0.098 Sum_probs=64.7
Q ss_pred CEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHCCCCC-------CCC-----CCCCCCCCCCCCCCCCHH
Q ss_conf 056642142112331222--233321001333222002444201100-------012-----222222222222221002
Q gi|254780875|r 100 RILDLGTGTGAVCLALLK--ESPFFKGVGVDISCKALEIAKSNAVTN-------GVS-----ERFDTLQSDWFSSVEGLF 165 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~--~~~~~~v~~~Dis~~al~~A~~N~~~~-------~~~-----~~i~~~~~d~~~~~~~~f 165 (264)
+|-=+|+|+ ++-++|. ...+.+|+..|.++++.+.+++.+.+. ++. +|+.+. .++.+. -...
T Consensus 9 ~VaVIGaG~--MG~giAa~~a~~G~~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~-~~l~~a-v~~a 84 (321)
T PRK07066 9 TFAAIGSGV--IGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC-VADA 84 (321)
T ss_pred EEEEECCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CCHHHH-HCCC
T ss_conf 799988878--889999999947985999969888999999999999999986689963169650146-888998-6359
Q ss_pred HHHHHCCHH---HHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCCEEE------------EEECC
Q ss_conf 333201133---32100122111112357543321011-232102568999998537887899------------98176
Q gi|254780875|r 166 DVIVSNPPY---IESVIVDCLGLEVRDFDPRISLDGGI-DGLSHYRTIADGVSRHLNKDGLCS------------VEIGY 229 (264)
Q Consensus 166 D~IvsNPPY---I~~~~~~~l~~~v~~~EP~~AL~gg~-dGl~~~~~ii~~~~~~L~~~G~l~------------lEig~ 229 (264)
|+|+=|=|= ++...+..++. +=|..|+.+.. .|+. +..+.. ..-.|.-.+. +|+=.
T Consensus 85 D~ViEavpE~l~lK~~lf~~ld~----~~~~~aIiASnTS~l~-is~l~~---~~~~peR~i~~HfFNP~~lmPLVEVV~ 156 (321)
T PRK07066 85 DFIQESAPEREALKLELHERISR----AAKPDAIIASSTSGLL-PTDFYA---RATHPERCVVGHPFNPVYLLPLVEVLG 156 (321)
T ss_pred CEEEECCEECHHHHHHHHHHHHH----HCCCCCEEEECCCCCC-HHHHHH---HCCCCCEEEEEEECCCCCCCCCEEECC
T ss_conf 98998776659999999999997----6798867852576578-999987---369970268761058753254244428
Q ss_pred ------CHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf ------679999999997898058998056899
Q gi|254780875|r 230 ------NQKVDVVRIFESRKLFLVNAFKDYGGN 256 (264)
Q Consensus 230 ------~q~~~v~~ll~~~gf~~v~~~kD~~g~ 256 (264)
.-.+.+.+++++.|...|.+.||.-|.
T Consensus 157 g~~Ts~~tv~~a~~~~~~iGk~PV~v~ke~pGF 189 (321)
T PRK07066 157 GERTAPEAVDAAMGIYRALGMRPLHVRKEVPGF 189 (321)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 999979999999999998199788992778425
No 447
>PRK07451 translation initiation factor Sui1; Validated
Probab=32.86 E-value=37 Score=14.90 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHHHHCCCCE
Q ss_conf 10256899999853788789---99817667999999999789805
Q gi|254780875|r 204 SHYRTIADGVSRHLNKDGLC---SVEIGYNQKVDVVRIFESRKLFL 246 (264)
Q Consensus 204 ~~~~~ii~~~~~~L~~~G~l---~lEig~~q~~~v~~ll~~~gf~~ 246 (264)
..++.+.+..++.+--||-+ .+||--+|.+.+.++|++.||..
T Consensus 62 ~~lk~LaK~LK~~cG~GGtvKdg~IeiQGD~Rdkv~~~L~~~Gy~v 107 (112)
T PRK07451 62 ETLAKLLKQLKTQCGSGGTVKDNTIEIQGDHRQKILEILIKLGYKA 107 (112)
T ss_pred HHHHHHHHHHHHHHCCCCEEECCEEEECCCHHHHHHHHHHHCCCEE
T ss_conf 9999999999997378950608989971747999999999879956
No 448
>PRK05693 short chain dehydrogenase; Provisional
Probab=32.79 E-value=3.7 Score=21.47 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=11.2
Q ss_pred CCCCEEEEECCCCCCCCC
Q ss_conf 686056642142112331
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLA 114 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~ 114 (264)
..-+|+-+++.+|.++.-
T Consensus 121 ~~G~IVnisS~ag~~~~p 138 (274)
T PRK05693 121 SRGLVVNIGSVSGVLVTP 138 (274)
T ss_pred CCCEEEEEECCHHCCCCC
T ss_conf 896799981405326899
No 449
>PRK12828 short chain dehydrogenase; Provisional
Probab=32.74 E-value=12 Score=18.22 Aligned_cols=71 Identities=13% Similarity=-0.042 Sum_probs=42.7
Q ss_pred CCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CC
Q ss_conf 8605664214211233122223--33210013332220024442011000122222222222222---------2---10
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EG 163 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~ 163 (264)
+..+|=-|.++| |+.++|+.+ .+++|..+|.+.+.++-+.++....+ ..+...|+-+. . -+
T Consensus 7 gKvalITGas~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~----~~~~~~Dvt~~~~~~~~v~~~~~~~G 81 (239)
T PRK12828 7 GKVVAITGGFGG-LGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADA----LRIGGIDLVDPQAARRAVDEVNRQFG 81 (239)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC----CEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 898999472548-9999999999879989999798778999998751788----56999607999999999999999839
Q ss_pred HHHHHHHCCH
Q ss_conf 0233320113
Q gi|254780875|r 164 LFDVIVSNPP 173 (264)
Q Consensus 164 ~fD~IvsNPP 173 (264)
+.|++|.|=-
T Consensus 82 ~iDilVnNAG 91 (239)
T PRK12828 82 RLDALVNIAG 91 (239)
T ss_pred CCCEEEECCC
T ss_conf 9979998977
No 450
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.21 E-value=12 Score=18.17 Aligned_cols=62 Identities=27% Similarity=0.231 Sum_probs=33.8
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-------CCCHHHHHH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222-------210023332
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-------VEGLFDVIV 169 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-------~~~~fD~Iv 169 (264)
..+|=-|.++| |+.++++.+ .+++|+++|.++.... ..++.+++.|+-+. .-++.|++|
T Consensus 6 K~alVTGas~G-IG~aia~~~a~~Ga~V~~~d~~~~~~~-----------~~~~~~~~~Dv~~~~v~~~~~~~g~iDiLv 73 (237)
T PRK06550 6 KTVLVTGAASG-IGLAQARAFLEQGAHVYGVDKSDKPDL-----------SGNFHFIQLDLSSDKLEPLFKVVPSVDILC 73 (237)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHC-----------CCCEEEEECCCCHHHHHHHHHHCCCCCEEE
T ss_conf 89999374779-999999999987999999708612430-----------697389986388899999999759997999
Q ss_pred HCC
Q ss_conf 011
Q gi|254780875|r 170 SNP 172 (264)
Q Consensus 170 sNP 172 (264)
.|-
T Consensus 74 NnA 76 (237)
T PRK06550 74 NTA 76 (237)
T ss_pred ECC
T ss_conf 898
No 451
>pfam04019 DUF359 Protein of unknown function (DUF359). This family of archaebacterial proteins are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=32.11 E-value=37 Score=14.93 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=33.6
Q ss_pred HHHCCH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE-----------EECCCHHHHH
Q ss_conf 320113-3321001221111123575433210112321025689999985378878999-----------8176679999
Q gi|254780875|r 168 IVSNPP-YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV-----------EIGYNQKVDV 235 (264)
Q Consensus 168 IvsNPP-YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l-----------Eig~~q~~~v 235 (264)
-+.||| +|..+.+..+...+..-+|..-...|+.-| +....-.+.|.|..++ .+...-...+
T Consensus 38 ~v~NP~G~IT~el~~~i~~a~~~~~~~~I~VdGEEDL------a~lp~il~aP~gsvV~YGQP~~GvV~~~v~~e~K~~~ 111 (121)
T pfam04019 38 TVKNPPGTITEELIEAIKEALESGKPVVIFVDGEEDL------AVLPAILYAPLGSVVVYGQPDEGVVLIRVTEELKRRV 111 (121)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHH------HHHHHHEECCCCCEEEECCCCCEEEEEECCHHHHHHH
T ss_conf 9889897147999999999981899879999474563------4446651369998899779996289999299999999
Q ss_pred HHHHHHC
Q ss_conf 9999978
Q gi|254780875|r 236 VRIFESR 242 (264)
Q Consensus 236 ~~ll~~~ 242 (264)
.++|+..
T Consensus 112 ~~lL~~f 118 (121)
T pfam04019 112 EELLKKF 118 (121)
T ss_pred HHHHHHH
T ss_conf 9999973
No 452
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=31.98 E-value=19 Score=16.78 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=26.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 468605664214211233122223332100133322200244420
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSN 140 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N 140 (264)
...-+|.-+|+| ||=.++.....| +.|..+|+++.-+++.+-.
T Consensus 62 g~ghrivtigSG-Gcn~L~ylsr~P-a~id~VDlN~ahiAln~lk 104 (414)
T COG5379 62 GIGHRIVTIGSG-GCNMLAYLSRAP-ARIDVVDLNPAHIALNRLK 104 (414)
T ss_pred CCCCEEEEECCC-CCHHHHHHHCCC-CEEEEEECCHHHHHHHHHH
T ss_conf 778379994588-613878761497-6037883788998998999
No 453
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=31.91 E-value=24 Score=16.17 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=11.5
Q ss_pred HHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHH
Q ss_conf 68999998537-8878999817667999999999
Q gi|254780875|r 208 TIADGVSRHLN-KDGLCSVEIGYNQKVDVVRIFE 240 (264)
Q Consensus 208 ~ii~~~~~~L~-~~G~l~lEig~~q~~~v~~ll~ 240 (264)
.++....+.+. .+|.+++=-.+.+-+.+.+.+.
T Consensus 522 ~~~~~i~~~~~~~~g~LVLFtS~~~l~~v~~~l~ 555 (697)
T PRK11747 522 EMAAYLPELLEGHKGSLVLFSSRRQMQKVADLLP 555 (697)
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHH
T ss_conf 9999999999856984999501999999999876
No 454
>PRK07035 short chain dehydrogenase; Provisional
Probab=31.66 E-value=11 Score=18.36 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=41.6
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
++..+|=-|.++| |+.++|+.+ .+++|+.+|.+.+.++-+.+.....+- +...+..|+-+. . -
T Consensus 7 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (252)
T PRK07035 7 TGKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG--KAEALACHIGEMEQIDALFAQIRERH 83 (252)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 8998999588749-99999999998799899997988999999999996499--57999824899999999999999982
Q ss_pred CHHHHHHHCC
Q ss_conf 0023332011
Q gi|254780875|r 163 GLFDVIVSNP 172 (264)
Q Consensus 163 ~~fD~IvsNP 172 (264)
++.|++|.|-
T Consensus 84 G~iDilVnnA 93 (252)
T PRK07035 84 GRLDILVNNA 93 (252)
T ss_pred CCCCEEEECC
T ss_conf 9977898768
No 455
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.42 E-value=18 Score=16.90 Aligned_cols=74 Identities=16% Similarity=0.052 Sum_probs=32.1
Q ss_pred CCCEEEEECCCC-CCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 860566421421-1233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 98 VVRILDLGTGTG-AVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 98 ~~~vLDlG~GsG-~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
..++|=.|+|++ -|+.++|+.+ .+++|+....++...+.+.+-+...+ . ....+.|+-+. . .
T Consensus 10 GK~alITGaag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~l~~~~g--~-~~~~~~Dvtd~~~v~~~v~~~~~~~ 86 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--A-FVVGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCC--C-EEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 999999889998689999999999869999997486689999999998649--8-1899837899999999999999986
Q ss_pred CHHHHHHHCCHH
Q ss_conf 002333201133
Q gi|254780875|r 163 GLFDVIVSNPPY 174 (264)
Q Consensus 163 ~~fD~IvsNPPY 174 (264)
++.|++|.|--+
T Consensus 87 G~iDiLVnnag~ 98 (272)
T PRK08159 87 GKLDFVVHAIGF 98 (272)
T ss_pred CCCCEEEECCCC
T ss_conf 997889853544
No 456
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes . The plsX gene encodes a poorly understood enzyme of phospholipid metabolism .; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process.
Probab=31.15 E-value=20 Score=16.65 Aligned_cols=84 Identities=23% Similarity=0.271 Sum_probs=42.3
Q ss_pred HCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC------CCCCCCCCCCCC-----------CCCCHHHHHHCCCCCCCC
Q ss_conf 012332110124686056642142112331222------233321001333-----------222002444201100012
Q gi|254780875|r 85 ALAFSLPRIEKRDVVRILDLGTGTGAVCLALLK------ESPFFKGVGVDI-----------SCKALEIAKSNAVTNGVS 147 (264)
Q Consensus 85 ~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~------~~~~~~v~~~Di-----------s~~al~~A~~N~~~~~~~ 147 (264)
|+--..+....++..-+||+|.-.=|=+-.|.. .+-. +|+.++- +.+-..++++-.+.++-.
T Consensus 125 A~~t~~Pt~~P~~~~~~LDvGAN~dc~p~~L~~fAlMG~vy~~-~v~~~~sPkVgLLNiGeE~~KG~~l~~~t~~~Lk~~ 203 (344)
T TIGR00182 125 ALVTLLPTVNPKDKFVLLDVGANVDCKPKYLVQFALMGSVYAK-KVLGVDSPKVGLLNIGEEDNKGNDLVKETFKLLKED 203 (344)
T ss_pred EECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 1014277011896269985556757884323344101332111-100058980562357650021356689999996228
Q ss_pred CCCCCCCCCCCC--CCCCHHHHHHH
Q ss_conf 222222222222--22100233320
Q gi|254780875|r 148 ERFDTLQSDWFS--SVEGLFDVIVS 170 (264)
Q Consensus 148 ~~i~~~~~d~~~--~~~~~fD~Ivs 170 (264)
.++.| -|++.. -++|.+|+|||
T Consensus 204 ~~inF-~GnvE~rdlL~G~~DV~Vc 227 (344)
T TIGR00182 204 PNINF-IGNVEARDLLDGVVDVLVC 227 (344)
T ss_pred CCCCE-EEEECHHHHHCCCEEEEEE
T ss_conf 87760-6520005430686469984
No 457
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=30.12 E-value=13 Score=17.79 Aligned_cols=74 Identities=20% Similarity=0.094 Sum_probs=39.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCC-CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 68605664214211233122223--3321001-3332220024442011000122222222222222---------2---
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVG-VDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~-~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
++..+|=-|.++| |+.++++.+ .+++|.- ...+++.++-+..-++..+. ++.++++|+-+. .
T Consensus 5 ~~KvalVTGa~~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~ 81 (252)
T PRK06947 5 DRKVVLITGASRG-IGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGG--RACVVAGDVANEADVIAMFDAVQAA 81 (252)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9908999388358-999999999987998999808987899999999996499--2899984799999999999999998
Q ss_pred CCHHHHHHHCCH
Q ss_conf 100233320113
Q gi|254780875|r 162 EGLFDVIVSNPP 173 (264)
Q Consensus 162 ~~~fD~IvsNPP 173 (264)
-++.|++|.|==
T Consensus 82 ~G~iD~lVnNAG 93 (252)
T PRK06947 82 FGRLDALVNNAG 93 (252)
T ss_pred HCCCCEEEECCC
T ss_conf 499889998764
No 458
>pfam03767 Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase). This family proteins includes acid phosphatases and a number of vegetative storage proteins.
Probab=29.98 E-value=41 Score=14.59 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=9.2
Q ss_pred HHHHCCHHHHHHCC
Q ss_conf 33201133321001
Q gi|254780875|r 167 VIVSNPPYIESVIV 180 (264)
Q Consensus 167 ~IvsNPPYI~~~~~ 180 (264)
.++||+||-.....
T Consensus 87 T~LsN~pY~~~~~~ 100 (230)
T pfam03767 87 TVLSNIPYYAYHGY 100 (230)
T ss_pred CCCCCHHHHHHHCC
T ss_conf 22157788986546
No 459
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.68 E-value=7.6 Score=19.41 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=34.3
Q ss_pred EEEECCCCCCCCCCCCCC--CCCCCCCCCCCC-CCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---CCHHH
Q ss_conf 664214211233122223--332100133322-20024442011000122222222222222---------2---10023
Q gi|254780875|r 102 LDLGTGTGAVCLALLKES--PFFKGVGVDISC-KALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---EGLFD 166 (264)
Q Consensus 102 LDlG~GsG~i~i~la~~~--~~~~v~~~Dis~-~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~~~fD 166 (264)
|=-|.++| |+.++++.+ .+++|..+|.+. +.++.+.+..+.++ .++.++++|+.+. . -++.|
T Consensus 9 lVTGgs~G-IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~~~~~~~~~~~~fg~iD 85 (259)
T PRK12745 9 LVTGGRRG-IGLGIALALAAGGFDLAINDRPDAEKLAATQQELRALG--VEVIFFPADVADLSAHEATLDAAQDAWGRID 85 (259)
T ss_pred EEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99686789-99999999998799899997986678999999998449--9489998468999999999999999829988
Q ss_pred HHHHCC
Q ss_conf 332011
Q gi|254780875|r 167 VIVSNP 172 (264)
Q Consensus 167 ~IvsNP 172 (264)
++|.|=
T Consensus 86 iLVNNA 91 (259)
T PRK12745 86 CLVNNA 91 (259)
T ss_pred EEEECC
T ss_conf 999847
No 460
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.65 E-value=16 Score=17.28 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=38.7
Q ss_pred CCCEEEEECCC-CCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---C
Q ss_conf 86056642142-11233122223--33210013332220024442011000122222222222222---------2---1
Q gi|254780875|r 98 VVRILDLGTGT-GAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V---E 162 (264)
Q Consensus 98 ~~~vLDlG~Gs-G~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~---~ 162 (264)
+.++|=-|+++ .-|+.++|+.+ .+++|+..+.+++..+...+-. ..++.+++.|+.+. . -
T Consensus 7 gK~~lVTGaag~~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~~~~-----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV-----DEEDLLVECDVASDESIERAFAQIKERF 81 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC-----CCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 98899989999877999999999986999999848879999999850-----8886599951899999999999999986
Q ss_pred CHHHHHHHCCHHH
Q ss_conf 0023332011333
Q gi|254780875|r 163 GLFDVIVSNPPYI 175 (264)
Q Consensus 163 ~~fD~IvsNPPYI 175 (264)
++.|.+|.|--|.
T Consensus 82 G~iD~lVnnag~~ 94 (252)
T PRK06079 82 GKIDGIVHAIAYA 94 (252)
T ss_pred CCCCEEEEEEECC
T ss_conf 8887344332025
No 461
>PRK06484 short chain dehydrogenase; Validated
Probab=29.49 E-value=11 Score=18.49 Aligned_cols=71 Identities=15% Similarity=0.015 Sum_probs=43.4
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CC
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222------------21
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VE 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~ 162 (264)
+...+|=-|.|+| |+-++|+.+ .+++|+..|++.++++-..+..... ...+..|+-+. --
T Consensus 273 kGKvalVTGaa~G-IG~aiA~~la~~GA~Vvi~d~~~~~~~~~~~~~g~~-----~~~~~~Dv~~~~~v~~~v~~~~~~f 346 (530)
T PRK06484 273 AGRVVCVTGGASG-IGAAIADRFAALGDRVAIIDSDGEEAVKLREILGGE-----HLSWQVDITDEASVESAFAGIQGRL 346 (530)
T ss_pred CCCEEEECCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC-----CEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 8989999287678-999999999988798999958889999999973997-----3699953899999999999999982
Q ss_pred CHHHHHHHCCH
Q ss_conf 00233320113
Q gi|254780875|r 163 GLFDVIVSNPP 173 (264)
Q Consensus 163 ~~fD~IvsNPP 173 (264)
++.|++|.|-=
T Consensus 347 G~iDiLVNNAG 357 (530)
T PRK06484 347 GPLDVLVNNAG 357 (530)
T ss_pred CCCCEEEECCC
T ss_conf 99889998977
No 462
>KOG1098 consensus
Probab=29.35 E-value=15 Score=17.58 Aligned_cols=35 Identities=26% Similarity=0.191 Sum_probs=20.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 686056642142112331222233-32100133322
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESP-FFKGVGVDISC 131 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~-~~~v~~~Dis~ 131 (264)
+.-.+|||||--|...-..++..| +..|+|+|+-|
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred CCCHHEECCCCCCHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 441110002587479999997678873488752011
No 463
>KOG4690 consensus
Probab=29.35 E-value=16 Score=17.28 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=17.3
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 642142112331222233321001333222002444201100
Q gi|254780875|r 103 DLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN 144 (264)
Q Consensus 103 DlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~ 144 (264)
+=||||||.-.. |.|++=|... ..-+++.+.++
T Consensus 84 ~nCC~SGCv~CV-------WDVY~DdLEd--YN~~r~~a~~~ 116 (165)
T KOG4690 84 DNCCMSGCVNCV-------WDVYSDDLED--YNHRRKEAAEK 116 (165)
T ss_pred CCCHHCCCCEEE-------EHHHHHHHHH--HHHHHHHHHHH
T ss_conf 430210750465-------2224336899--99998888887
No 464
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=29.30 E-value=16 Score=17.23 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 124686056642142-1123312222333210013332220024442011
Q gi|254780875|r 94 EKRDVVRILDLGTGT-GAVCLALLKESPFFKGVGVDISCKALEIAKSNAV 142 (264)
Q Consensus 94 ~~~~~~~vLDlG~Gs-G~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~ 142 (264)
.-++.-+++=+|+|. |..++.+|+.. +++|+++|.++.-++.|++.-.
T Consensus 163 ~v~~g~~V~V~G~G~iGl~a~~~ak~~-Ga~Vi~vd~~~~rle~a~~~Ga 211 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCC
T ss_conf 789998899989748999999999985-9979999499999999996499
No 465
>pfam06460 NSP13 Coronavirus NSP13. This family covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase function.
Probab=29.02 E-value=43 Score=14.48 Aligned_cols=118 Identities=21% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCCCCCCEEEEECCCC--C-CCCCCCCCC-C-CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCHHH
Q ss_conf 01246860566421421--1-233122223-3-3210013332220024442011000122222222222222-210023
Q gi|254780875|r 93 IEKRDVVRILDLGTGTG--A-VCLALLKES-P-FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-VEGLFD 166 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG--~-i~i~la~~~-~-~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-~~~~fD 166 (264)
.--..+.+|+-+|.||- + =+-++.+++ | ++-++-.|+.+-. . +... .+-+|.... .+.+||
T Consensus 58 laVP~nmrVlHlGAgsdkGvaPGt~VLrqwLP~~ailvDnDi~dyv---S---------Da~~-s~~gDc~t~~~~~k~D 124 (300)
T pfam06460 58 LCVPHNMRVLHLGAGSDKGVAPGSAVLRQWLPKGTILVDNDIVDYV---S---------DADA-SVLGDCHTLYTEDKFD 124 (300)
T ss_pred EEECCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCEEECCCHHHHH---C---------CCCC-EEECCCEEECCCCEEE
T ss_conf 7643563799732665568688558999758898789707515530---3---------4561-7871323654786140
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHCCCCCEEEE---EECCCHHHHHHHHH
Q ss_conf 3320113332100122111112357543321----0112321025689999985378878999---81766799999999
Q gi|254780875|r 167 VIVSNPPYIESVIVDCLGLEVRDFDPRISLD----GGIDGLSHYRTIADGVSRHLNKDGLCSV---EIGYNQKVDVVRIF 239 (264)
Q Consensus 167 ~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~----gg~dGl~~~~~ii~~~~~~L~~~G~l~l---Eig~~q~~~v~~ll 239 (264)
+|+|. | |+|+.--. ...+|...| +.....+-|.-||-+++ |+.+ ..++-+++
T Consensus 125 liiSD--------m---------Yd~~~k~~~~~n~sk~gfF~y--l~~~i~~kLALGGSvaiKiTE~Sw--~~~LY~l~ 183 (300)
T pfam06460 125 LIISD--------M---------YDGRTKSIDGENNSKEGFFTY--ICGFIREKLALGGSIAIKITEFSW--NAQLYELM 183 (300)
T ss_pred EEEEE--------C---------CCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHCCCCEEEEEEEEEEC--CHHHHHHH
T ss_conf 89764--------3---------377653036643432018999--999987654057658999874006--89999998
Q ss_pred HHCCC
Q ss_conf 97898
Q gi|254780875|r 240 ESRKL 244 (264)
Q Consensus 240 ~~~gf 244 (264)
....|
T Consensus 184 ~~F~~ 188 (300)
T pfam06460 184 QYFSF 188 (300)
T ss_pred HHHHH
T ss_conf 54112
No 466
>PRK07074 short chain dehydrogenase; Provisional
Probab=28.97 E-value=8.3 Score=19.17 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=17.5
Q ss_pred EECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHH
Q ss_conf 4214211233122223--33210013332220024442
Q gi|254780875|r 104 LGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 104 lG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~ 139 (264)
-|.++| |+.++++.+ .+++|+.+|.+.+.++-..+
T Consensus 8 TGgs~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 44 (256)
T PRK07074 8 TGAAGG-IGQALARRFLAAGDRVLALDIDRAALAAFVD 44 (256)
T ss_pred ECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 884689-9999999999869999999798899999999
No 467
>KOG0280 consensus
Probab=28.86 E-value=43 Score=14.46 Aligned_cols=165 Identities=18% Similarity=0.066 Sum_probs=75.4
Q ss_pred CHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 37685363144237677504620512235655531012332110124686056642142112331222233321001333
Q gi|254780875|r 50 SIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDI 129 (264)
Q Consensus 50 Pl~YIlg~~~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Di 129 (264)
-.++..|.-.|+..++.+...+|-|=---.+.+..++ -||+-+++--|..++- +..+.+++.
T Consensus 89 ~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l--------------slD~~~~~~~i~vs~s----~G~~~~v~~ 150 (339)
T KOG0280 89 LDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL--------------SLDISTSGTKIFVSDS----RGSISGVYE 150 (339)
T ss_pred EECCCCCEEEEEEECCCEEEEEECCCCHHHHHHEEEE--------------EEEEECCCCEEEEECC----CCCEEEEEC
T ss_conf 4303333189996125110044335541232200004--------------7776335736999727----774898850
Q ss_pred CCCCHH-------------HHHHCCCC-----CCCCCCCCCCCCCCCC---CC--CCH-----HHHHHHCCH---HHHHH
Q ss_conf 222002-------------44420110-----0012222222222222---22--100-----233320113---33210
Q gi|254780875|r 130 SCKALE-------------IAKSNAVT-----NGVSERFDTLQSDWFS---SV--EGL-----FDVIVSNPP---YIESV 178 (264)
Q Consensus 130 s~~al~-------------~A~~N~~~-----~~~~~~i~~~~~d~~~---~~--~~~-----fD~IvsNPP---YI~~~ 178 (264)
..--++ .|+-+-.. .|-++ -.+..-|... ++ ..+ .=-|-|||| ||.++
T Consensus 151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD-~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280 151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD-GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred CEEEEEECCCCCCCCEEEEEEECCCCCCCEEEECCCC-CEEEEEEECCCCCEEEECCEEEECCEEEEECCCCCCCEEEEE
T ss_conf 1102541213110102313100045888467856888-238998704775266434445414268986279999568973
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 012211111235754---332101123210256899999853788789998176679999999997898058998056
Q gi|254780875|r 179 IVDCLGLEVRDFDPR---ISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDY 253 (264)
Q Consensus 179 ~~~~l~~~v~~~EP~---~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD~ 253 (264)
.+.+- ++-++-+ ..|+.+. .-||+--+++.+.....+......+||+.+.+-++.
T Consensus 230 sYDe~---i~~~DtRnm~kPl~~~~-----------------v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280 230 SYDEC---IRVLDTRNMGKPLFKAK-----------------VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred CCCCC---EEEEEHHCCCCCCCCCC-----------------CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 13241---33332010267464576-----------------666168988563045678898874681578741564
No 468
>PRK09134 short chain dehydrogenase; Provisional
Probab=28.60 E-value=14 Score=17.66 Aligned_cols=79 Identities=20% Similarity=0.133 Sum_probs=45.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCC-CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C--
Q ss_conf 468605664214211233122223--33210-013332220024442011000122222222222222---------2--
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKG-VGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V-- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v-~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~-- 161 (264)
..+..+|=-|.++| |+.++|+.+ .+++| +..+.+.+.++-..+.....+. +..++++|+-+. .
T Consensus 7 ~~~KvalVTGas~G-IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dl~~~~~~~~~v~~~~~ 83 (256)
T PRK09134 7 AAPRAALVTGAARR-IGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGR--RAVALQADLADEAQVRALVARASA 83 (256)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99997999488678-999999999987998999849998999999999996499--189997558999999999999999
Q ss_pred -CCHHHHHHHCCHHHHH
Q ss_conf -1002333201133321
Q gi|254780875|r 162 -EGLFDVIVSNPPYIES 177 (264)
Q Consensus 162 -~~~fD~IvsNPPYI~~ 177 (264)
-++.|++|.|--....
T Consensus 84 ~~G~iDiLVnNAg~~~~ 100 (256)
T PRK09134 84 ALGPITLLVNNASLFEY 100 (256)
T ss_pred HHCCCCEEEECCCCCCC
T ss_conf 82998789988711689
No 469
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=28.40 E-value=19 Score=16.79 Aligned_cols=70 Identities=14% Similarity=-0.056 Sum_probs=38.7
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHCC
Q ss_conf 5664214211233122223--332100133322200244420110001222222222222-22210023332011
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF-SSVEGLFDVIVSNP 172 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~-~~~~~~fD~IvsNP 172 (264)
|+=+|-|-=-+++++++.+ .+..++..|.++....-...-...+... +.+..+++. ....+.+|+||-||
T Consensus 2 i~i~GlG~tG~G~a~a~~L~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~d~vv~SP 74 (476)
T TIGR01087 2 ILILGLGKTGRGVAVARFLKKKGAEVTVTDDDPEEELERSKGQLKLSEG--VVLYTGGKDDLEDLNNADLVVLSP 74 (476)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCCC--EEEEECCCCCCCCCCCCEEEEECC
T ss_conf 7899867510789999999972987999984522134311331245564--135326753101233420799789
No 470
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=28.00 E-value=26 Score=15.91 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 05122356555310123321101246860566421421
Q gi|254780875|r 72 FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTG 109 (264)
Q Consensus 72 LIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG 109 (264)
+-|||.=..+++.+...+ ..+ ..-+++-+||||
T Consensus 7 y~py~~Q~e~m~~v~~~l----~~~-~~~llEaPTGtG 39 (289)
T smart00489 7 YEPYPIQYEFMEELKRVL----DRG-KIGILESPTGTG 39 (289)
T ss_pred CCCCHHHHHHHHHHHHHH----HCC-CEEEEECCCCHH
T ss_conf 999989999999999999----749-979998999651
No 471
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=28.00 E-value=26 Score=15.91 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 05122356555310123321101246860566421421
Q gi|254780875|r 72 FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTG 109 (264)
Q Consensus 72 LIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG 109 (264)
+-|||.=..+++.+...+ ..+ ..-+++-+||||
T Consensus 7 y~py~~Q~e~m~~v~~~l----~~~-~~~llEaPTGtG 39 (289)
T smart00488 7 YEPYPIQYEFMEELKRVL----DRG-KIGILESPTGTG 39 (289)
T ss_pred CCCCHHHHHHHHHHHHHH----HCC-CEEEEECCCCHH
T ss_conf 999989999999999999----749-979998999651
No 472
>KOG0022 consensus
Probab=27.83 E-value=24 Score=16.18 Aligned_cols=92 Identities=23% Similarity=0.231 Sum_probs=52.4
Q ss_pred HCCCCHHHHCCCEEEEEEEEEEECCC-----CCHHHHHHHH---HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCC--
Q ss_conf 74983768536314423767750462-----0512235655---5310123321101246860566421421123312--
Q gi|254780875|r 46 LKHESIHRILGWRDFYNVRLTLSSDT-----FEPRPETELL---VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLAL-- 115 (264)
Q Consensus 46 ~~g~Pl~YIlg~~~F~~~~f~v~~~v-----LIPRpeTE~l---v~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~l-- 115 (264)
.+|+|+-+-+|-.-|-.+.---+-+| .+|=-..-+| |.+-........+-.+..++.=.|.|+ ++++.
T Consensus 133 ~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~--VGLav~~ 210 (375)
T KOG0022 133 CKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGG--VGLAVAM 210 (375)
T ss_pred ECCCCEEEECCCCCCEEEEEEECCEEEECCCCCCHHHEEEEECCCCCCCHHHHHHCCCCCCCEEEEEECCH--HHHHHHH
T ss_conf 68972588437665211699601116766988982152686045345613443213467798799990545--7889987
Q ss_pred -CCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -222333210013332220024442
Q gi|254780875|r 116 -LKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 116 -a~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
|+..-.++++|+|++++-.+.|++
T Consensus 211 Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022 211 GAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred HHHHCCCCCEEEEECCHHHHHHHHH
T ss_conf 6776186517998558789899876
No 473
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=27.72 E-value=19 Score=16.82 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=32.5
Q ss_pred CCCEEEEECCCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCHHHHH
Q ss_conf 8605664214211233122---22333210013332220024442011000122222222222------22221002333
Q gi|254780875|r 98 VVRILDLGTGTGAVCLALL---KESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDW------FSSVEGLFDVI 168 (264)
Q Consensus 98 ~~~vLDlG~GsG~i~i~la---~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~------~~~~~~~fD~I 168 (264)
..+||=||. .|-|+-.|. .+..++.|+|.|+..+++.---.| -|..|.+||+ -+.--.+.|+|
T Consensus 315 ~~~vlilgv-ngfig~hl~~~~l~~~~~~v~g~d~~~~~i~~~~~~-------p~~~f~~gdi~~~~~wie~~ikkcdvv 386 (660)
T PRK08125 315 RTRVLILGV-NGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGH-------PRFHFVEGDISIHSEWIEYHIKKCDVV 386 (660)
T ss_pred CEEEEEEEC-CCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCC-------CCEEEEECCCHHHHHHHHHHHHHCCEE
T ss_conf 227999834-413678999998503885899886575345575349-------954888156146689999887545767
No 474
>PRK09019 translation initiation factor Sui1; Validated
Probab=27.45 E-value=46 Score=14.30 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHHHHCCCCE
Q ss_conf 0256899999853788789---99817667999999999789805
Q gi|254780875|r 205 HYRTIADGVSRHLNKDGLC---SVEIGYNQKVDVVRIFESRKLFL 246 (264)
Q Consensus 205 ~~~~ii~~~~~~L~~~G~l---~lEig~~q~~~v~~ll~~~gf~~ 246 (264)
.++.+.+...+.+--||-+ .+||--+|.+.+.++|++.||..
T Consensus 59 ~lk~Lak~LK~~cG~GGsvK~~~IeiQGD~R~kv~~~L~~~G~~v 103 (108)
T PRK09019 59 ELKKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKV 103 (108)
T ss_pred HHHHHHHHHHHHHCCCCEECCCEEEECCCHHHHHHHHHHHCCCEE
T ss_conf 999999999998457850718999981726999999999879905
No 475
>KOG2360 consensus
Probab=27.44 E-value=26 Score=15.86 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=52.3
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCH---HHH
Q ss_conf 012468605664214211233122223-33210013332220024442011000122222222222222-2100---233
Q gi|254780875|r 93 IEKRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-VEGL---FDV 167 (264)
Q Consensus 93 ~~~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-~~~~---fD~ 167 (264)
+...++.+|.|.||--|.=++-+|.-. +..++.|.|.+++-.+.-++=....|... ++...+|++.. .+.+ ...
T Consensus 209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCEEE
T ss_conf 389998823554146653211299886224872132341688999999998717874-5320144447778100265059
Q ss_pred HHHCCHH
Q ss_conf 3201133
Q gi|254780875|r 168 IVSNPPY 174 (264)
Q Consensus 168 IvsNPPY 174 (264)
|++.|+-
T Consensus 288 iL~Dpsc 294 (413)
T KOG2360 288 ILVDPSC 294 (413)
T ss_pred EEECCCC
T ss_conf 9857987
No 476
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=27.38 E-value=12 Score=18.04 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 025689999985378878999817
Q gi|254780875|r 205 HYRTIADGVSRHLNKDGLCSVEIG 228 (264)
Q Consensus 205 ~~~~ii~~~~~~L~~~G~l~lEig 228 (264)
.+++.+....+.+...|.+++...
T Consensus 196 ~i~~~F~~f~~~vp~~G~~v~~~d 219 (459)
T COG0773 196 AIKQAFHHFVRNVPFYGRAVVCGD 219 (459)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 999999999983886655999788
No 477
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=27.30 E-value=15 Score=17.39 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=38.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C---
Q ss_conf 468605664214211233122223--33210013332220024442011000122222222222222---------2---
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V--- 161 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~--- 161 (264)
-++..+|=-|.++| |+.++++.+ .+++|+++|.++..-...+ ....+ .++..++.|+.+. .
T Consensus 8 L~gK~alITGas~G-IG~aia~~la~~Ga~Vv~~~~~~~~~~~~~--~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 82 (253)
T PRK08993 8 LEGKVAVVTGCDTG-LGQGMALGLAEAGCDIVGINIVEPTETIEQ--VTALG--RRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHH--HHHCC--CCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99998999388768-999999999987999999558774999999--99659--95799980379999999999999998
Q ss_pred CCHHHHHHHCCH
Q ss_conf 100233320113
Q gi|254780875|r 162 EGLFDVIVSNPP 173 (264)
Q Consensus 162 ~~~fD~IvsNPP 173 (264)
-++.|++|.|--
T Consensus 83 ~G~iDilVnnAG 94 (253)
T PRK08993 83 FGHIDILVNNAG 94 (253)
T ss_pred HCCCEEEEECCC
T ss_conf 499729998997
No 478
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.19 E-value=19 Score=16.84 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=4.8
Q ss_pred CEEEEECCCCC
Q ss_conf 05664214211
Q gi|254780875|r 100 RILDLGTGTGA 110 (264)
Q Consensus 100 ~vLDlG~GsG~ 110 (264)
+|+-+++.+|.
T Consensus 146 ~IInisS~ag~ 156 (303)
T PRK07792 146 RIVNTSSEAGL 156 (303)
T ss_pred EEEEECCHHHC
T ss_conf 99997447656
No 479
>PRK10329 glutaredoxin-like protein; Provisional
Probab=26.84 E-value=47 Score=14.23 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE
Q ss_conf 99999853788789998176679999999997898058
Q gi|254780875|r 210 ADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLV 247 (264)
Q Consensus 210 i~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v 247 (264)
+...+++|...|.=+-|+.-++..+..+.++..||.-+
T Consensus 14 C~aTKr~L~~~gI~y~~vdi~~dpea~~~vk~~G~~q~ 51 (81)
T PRK10329 14 CHATKRAMESRGFDFEMINVDRVPEAADTLRAQGFRQL 51 (81)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCC
T ss_conf 79899999987994299858999999999997698559
No 480
>KOG2013 consensus
Probab=26.84 E-value=22 Score=16.34 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=6.6
Q ss_pred HHHHCCCEEEEE
Q ss_conf 768536314423
Q gi|254780875|r 51 IHRILGWRDFYN 62 (264)
Q Consensus 51 l~YIlg~~~F~~ 62 (264)
+.|++|-..-|.
T Consensus 259 I~yl~~~e~~wk 270 (603)
T KOG2013 259 IEYLLGMEALWK 270 (603)
T ss_pred HHHHHHHHHHCC
T ss_conf 999972344315
No 481
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein; InterPro: IPR005768 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The later are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homolog proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight families of clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homolog with catalytic activity. ; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=26.65 E-value=47 Score=14.21 Aligned_cols=145 Identities=15% Similarity=0.160 Sum_probs=77.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCCCCCCCC----CCHHHHHHHCCHH
Q ss_conf 056642142112331222233321001333222002444201100012-22222222222222----1002333201133
Q gi|254780875|r 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVS-ERFDTLQSDWFSSV----EGLFDVIVSNPPY 174 (264)
Q Consensus 100 ~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~-~~i~~~~~d~~~~~----~~~fD~IvsNPPY 174 (264)
.-+-+||=.+--+.. ...|+-+..|-||+= +=++|++=...-|.+ -.++|...+|-.-+ .++||+|+|| =+
T Consensus 27 ~~v~~gt~~~y~PF~--~~~a~G~~~GFDvDl-~~alc~~~~gD~GWdh~~c~~~~~~~~~liPsL~~k~~Dai~an-~~ 102 (333)
T TIGR01096 27 GSVRIGTETAYPPFE--FKDADGKLVGFDVDL-ANALCKEMKGDPGWDHAKCKFVEQAFDGLIPSLKAKKVDAIMAN-AM 102 (333)
T ss_pred CCEEEEECCCCCCCC--CCCCCCCEEEHHHHH-HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEEC-CC
T ss_conf 807998657879865--518895456326789-99999984589996431488842756652025453806899726-65
Q ss_pred -HHHHCCCCCCCCCCCCCCCCC--------------------CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf -321001221111123575433--------------------21011232102568999998537887899981766799
Q gi|254780875|r 175 -IESVIVDCLGLEVRDFDPRIS--------------------LDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKV 233 (264)
Q Consensus 175 -I~~~~~~~l~~~v~~~EP~~A--------------------L~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~ 233 (264)
|.+.--..+.-+-..|.-+.. |+.-. +--++-+....++|+.|-.+-+.-|..+..
T Consensus 103 ~It~~R~~~i~F~~~yy~~~~~f~v~~~~~~~~~~~~~E~~~Ld~~A---~~~K~~~d~~~~~L~nG~~~gV~~GTT~~~ 179 (333)
T TIGR01096 103 SITDERQKQIDFSDPYYATGAGFVVKKDSDLAKTLEDGENYSLDNQA---DAAKKEIDDVTKFLKNGKKVGVQSGTTHEQ 179 (333)
T ss_pred CCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCC---HHHHHHHHHHHHHHHCCCEEEECCCCCHHH
T ss_conf 54665663211443000044302222488754314533036720003---798998998999852754898626884899
Q ss_pred HHHHHHHHC--CCCEEEEEEC
Q ss_conf 999999978--9805899805
Q gi|254780875|r 234 DVVRIFESR--KLFLVNAFKD 252 (264)
Q Consensus 234 ~v~~ll~~~--gf~~v~~~kD 252 (264)
.+.+.++.+ ++. +..+..
T Consensus 180 ~~~~~~~~~Nl~v~-~~~Y~~ 199 (333)
T TIGR01096 180 YLKDEFKPKNLGVD-IVEYDS 199 (333)
T ss_pred HHHHHCCCCCCEEE-EEEECC
T ss_conf 99862443374266-664088
No 482
>LOAD_Ccd1 consensus
Probab=26.35 E-value=48 Score=14.17 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=40.4
Q ss_pred HHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHCCCCEEEEEECCCCCCEEEEE
Q ss_conf 9999985378878999817667-9999999997898058998056899759999
Q gi|254780875|r 210 ADGVSRHLNKDGLCSVEIGYNQ-KVDVVRIFESRKLFLVNAFKDYGGNDRVLLF 262 (264)
Q Consensus 210 i~~~~~~L~~~G~l~lEig~~q-~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~ 262 (264)
++.+.+-|++|..+.+-..... ..++..++++.|+..+++.++-.|.-|++|-
T Consensus 17 ~kk~l~~l~~G~~l~v~~dd~~a~~di~~~~~~~g~~~~~~~~~~~~~~~~~I~ 70 (71)
T LOAD_Ccd1 17 TKKALENMKPGEILEVIADDPGSTEDIPSWAKQMGHELVEVEEEGDGEIRILIK 70 (71)
T ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
T ss_conf 999997389999999993796578899999998699899999917927999998
No 483
>KOG1205 consensus
Probab=26.32 E-value=17 Score=17.18 Aligned_cols=76 Identities=28% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CC
Q ss_conf 68605664214211233122223--33210013332220024442011000122222222222222------------21
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VE 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~ 162 (264)
.+..|+=-|+-|| |+-++|.++ .+++++-+--..+.++...+-+...+-.+++..++.|+-+. .-
T Consensus 11 ~~kvVvITGASsG-IG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205 11 AGKVVLITGASSG-IGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 8988999578717-889999999867773477424320289999999974786764799676588788999999999865
Q ss_pred CHHHHHHHCCH
Q ss_conf 00233320113
Q gi|254780875|r 163 GLFDVIVSNPP 173 (264)
Q Consensus 163 ~~fD~IvsNPP 173 (264)
+..|+.|.|-=
T Consensus 90 g~vDvLVNNAG 100 (282)
T KOG1205 90 GRVDVLVNNAG 100 (282)
T ss_pred CCCCEEEECCC
T ss_conf 88888984686
No 484
>pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction.
Probab=26.14 E-value=47 Score=14.19 Aligned_cols=49 Identities=27% Similarity=0.407 Sum_probs=29.6
Q ss_pred CCCCCCCCCEEEEECCCCCC----CCCCCCC---CCCCCCCCCCC----CCCCHHHHHHC
Q ss_conf 10124686056642142112----3312222---33321001333----22200244420
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAV----CLALLKE---SPFFKGVGVDI----SCKALEIAKSN 140 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i----~i~la~~---~~~~~v~~~Di----s~~al~~A~~N 140 (264)
.....+.+.|+|++.|.|.= .-+||.+ -|..++|++.- +...++.+.+.
T Consensus 105 A~~g~~~vHIIDf~i~~G~QWp~Liq~LA~R~~gpp~lRIT~i~~~~~~~~~~l~~~g~r 164 (371)
T pfam03514 105 AFEGEERVHIIDFDIGQGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDR 164 (371)
T ss_pred HHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 975897147761367776407899999951999997678822238666875899999999
No 485
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=25.57 E-value=28 Score=15.71 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=47.6
Q ss_pred CHHHHHHHCCHHHHHHCCCCCCC-------------------------CCC--CCCCCCCCCCCCCC-----CCCH----
Q ss_conf 00233320113332100122111-------------------------112--35754332101123-----2102----
Q gi|254780875|r 163 GLFDVIVSNPPYIESVIVDCLGL-------------------------EVR--DFDPRISLDGGIDG-----LSHY---- 206 (264)
Q Consensus 163 ~~fD~IvsNPPYI~~~~~~~l~~-------------------------~v~--~~EP~~AL~gg~dG-----l~~~---- 206 (264)
.+||+||..|||-+.-.+..+.. .+. .-++..+.+-+..| -+++
T Consensus 488 ekfd~IVtDPPY~DdVpY~elsDffYvWlkr~l~~i~~~~~e~~~~wq~f~~~ev~~~~~~~~~~~~~~e~a~~~fe~l~ 567 (875)
T COG1743 488 EKFDVIVTDPPYYDDVPYAELSDFFYVWLKRILGRIGGKWLEIATQWQEFAKDEVSTNEGRFVGGGGRKEGAVEEFENLF 567 (875)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 36861645898656777542254344436755520165420100567886105444675542688875167999999999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCHHH---HHHHH-HHHCCCCEEEEE
Q ss_conf 568999998537887899981766799---99999-997898058998
Q gi|254780875|r 207 RTIADGVSRHLNKDGLCSVEIGYNQKV---DVVRI-FESRKLFLVNAF 250 (264)
Q Consensus 207 ~~ii~~~~~~L~~~G~l~lEig~~q~~---~v~~l-l~~~gf~~v~~~ 250 (264)
+..+.....+|+++|.+..=+.+.+.+ .+.+. .++.||..+..+
T Consensus 568 ~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~~ 615 (875)
T COG1743 568 REAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRAW 615 (875)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEECCC
T ss_conf 999999998638886179998626875317688888752564033035
No 486
>KOG1047 consensus
Probab=25.51 E-value=7 Score=19.65 Aligned_cols=89 Identities=16% Similarity=0.063 Sum_probs=42.5
Q ss_pred CCHHHHHHHCCHHHHHHCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 10023332011333210012211---------------111235754332101123210256899999853788789998
Q gi|254780875|r 162 EGLFDVIVSNPPYIESVIVDCLG---------------LEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE 226 (264)
Q Consensus 162 ~~~fD~IvsNPPYI~~~~~~~l~---------------~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE 226 (264)
-++||++| +||=.|..-|++-- -+|..||=.-+++|-.-+-.-+ -.-||+.|=..++|
T Consensus 252 WgryDllv-lPpSFP~gGMENPcltF~TpTllaGDrsl~~vIaHEIAHSWtGNlVTN~sW------ehfWLNEGfTvylE 324 (613)
T KOG1047 252 WGRYDLLV-LPPSFPFGGMENPCLTFVTPTLLAGDRSLVDVIAHEIAHSWTGNLVTNASW------EHFWLNEGFTVYLE 324 (613)
T ss_pred CCCCEEEE-ECCCCCCCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHCCEECCCCC------CHHHHCCCCHHHHH
T ss_conf 12201798-569888566668614664213322775125788888752321250015765------43343263055665
Q ss_pred ---ECCCHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf ---1766799999999978980589980568997
Q gi|254780875|r 227 ---IGYNQKVDVVRIFESRKLFLVNAFKDYGGND 257 (264)
Q Consensus 227 ---ig~~q~~~v~~ll~~~gf~~v~~~kD~~g~~ 257 (264)
+|.-++++..++-...|+...+...|..|.+
T Consensus 325 rrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~ 358 (613)
T KOG1047 325 RRIVGRLYGEAYRQFEALIGWRELRPSMDLFGET 358 (613)
T ss_pred HHHHHHHHCHHHHHHHHHHCHHHHHHHHHHCCCC
T ss_conf 6665664046688899861865525788853898
No 487
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=25.22 E-value=25 Score=16.01 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=12.1
Q ss_pred HHHHHHHHCCCC-HHHHCCCEE
Q ss_conf 999998974983-768536314
Q gi|254780875|r 39 TNAIVRSLKHES-IHRILGWRD 59 (264)
Q Consensus 39 ~~~i~rr~~g~P-l~YIlg~~~ 59 (264)
...++|-.+|+| +.-++-+++
T Consensus 134 klAi~rA~~~~P~~d~v~~ekd 155 (392)
T PRK13307 134 KLAIKRALEGFPDVDKVLKEKD 155 (392)
T ss_pred HHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999998629998899875331
No 488
>PRK08177 short chain dehydrogenase; Provisional
Probab=25.11 E-value=11 Score=18.29 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=13.6
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCH
Q ss_conf 5664214211233122223--332100133322200
Q gi|254780875|r 101 ILDLGTGTGAVCLALLKES--PFFKGVGVDISCKAL 134 (264)
Q Consensus 101 vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al 134 (264)
+|=-|+.+| |+.++++.+ .+++|++++.+++..
T Consensus 4 ~lITGas~G-IG~aia~~l~~~G~~V~~~~R~~~~~ 38 (225)
T PRK08177 4 ALIIGASRG-LGLGLVDRLLERGWQVTATVRGPQQD 38 (225)
T ss_pred EEECCCCHH-HHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 999273429-99999999998869999997988778
No 489
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=25.08 E-value=16 Score=17.38 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=38.4
Q ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC------------CCCH
Q ss_conf 605664214211233122223--33210013332220024442011000122222222222222------------2100
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS------------VEGL 164 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~------------~~~~ 164 (264)
..+|=-|.++| |+.++++.+ .+++|+.+|.+.+.++-..+ .++ .++..+..|+.+. -.++
T Consensus 6 KvalITGgs~G-IG~aia~~~a~~Ga~V~i~~r~~~~l~~~~~---~~g--~~~~~~~~Dv~~~~~~~~~v~~~~~~~G~ 79 (262)
T TIGR03325 6 EVVLVTGGASG-LGRAIVDRFVAEGARVAVLDKSAAGLQELEA---AHG--DAVVGVEGDVRSLDDHKEAVARCVAAFGK 79 (262)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HCC--CCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 88999067878-9999999999879999999899899999998---679--96799984579999999999999998499
Q ss_pred HHHHHHCC
Q ss_conf 23332011
Q gi|254780875|r 165 FDVIVSNP 172 (264)
Q Consensus 165 fD~IvsNP 172 (264)
.|++|.|-
T Consensus 80 iDiLVnNA 87 (262)
T TIGR03325 80 IDCLIPNA 87 (262)
T ss_pred CCEEEECC
T ss_conf 88899726
No 490
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=24.79 E-value=51 Score=13.99 Aligned_cols=105 Identities=22% Similarity=0.187 Sum_probs=54.0
Q ss_pred CEEEEECCCCCC-CC-CCCCCCCCCCCCC-CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CHHHHH-HHCCHH
Q ss_conf 056642142112-33-1222233321001-333222002444201100012222222222222221-002333-201133
Q gi|254780875|r 100 RILDLGTGTGAV-CL-ALLKESPFFKGVG-VDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE-GLFDVI-VSNPPY 174 (264)
Q Consensus 100 ~vLDlG~GsG~i-~i-~la~~~~~~~v~~-~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~-~~fD~I-vsNPPY 174 (264)
++.=+|||.=.- -+ .+....++.+++| +|.+++..+...+ .+++. .+ .|+.+.++ ..+|+| +|.||.
T Consensus 2 ki~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~---~~~~~----~~-~~~~~~l~~~~iD~v~I~tp~~ 73 (120)
T pfam01408 2 RVGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAE---SFGVP----AY-SDLEELLADPDVDAVSVATPPG 73 (120)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH---HHCCC----EE-CCHHHHHHCCCCCEEEECCCHH
T ss_conf 8999907799999999998559997899998299999999999---83996----78-8699997377889899908746
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE----CCCHHHHHHHHHHHCCCC
Q ss_conf 32100122111112357543321011232102568999998537887899981----766799999999978980
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI----GYNQKVDVVRIFESRKLF 245 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi----g~~q~~~v~~ll~~~gf~ 245 (264)
- | .+.+...|+.|--+++|= ...+..++.++.+++|..
T Consensus 74 ~--------------H-------------------~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~a~~~~~~ 115 (120)
T pfam01408 74 L--------------H-------------------FELALAALEAGKHVLVEKPLATTVEEAKELVELAEKKGVR 115 (120)
T ss_pred H--------------H-------------------HHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 1--------------8-------------------9999999981998999689819999999999999982996
No 491
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=24.69 E-value=25 Score=15.97 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=28.2
Q ss_pred EEEEECCCCCC----CCCCCCCCCCCCCCCCCCCCCC-------HHHHHHCCCCCCCCCCCCC
Q ss_conf 56642142112----3312222333210013332220-------0244420110001222222
Q gi|254780875|r 101 ILDLGTGTGAV----CLALLKESPFFKGVGVDISCKA-------LEIAKSNAVTNGVSERFDT 152 (264)
Q Consensus 101 vLDlG~GsG~i----~i~la~~~~~~~v~~~Dis~~a-------l~~A~~N~~~~~~~~~i~~ 152 (264)
.+=++||||-- ++.++...++..|+++|.+... +.+++.-++..++....++
T Consensus 183 ~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~l~~~~a~~~~~~~~~~v 245 (323)
T COG2515 183 SVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGSEADV 245 (323)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 799967885108999987651068884688760488799899999999988987067777507
No 492
>PRK06824 translation initiation factor Sui1; Validated
Probab=24.64 E-value=51 Score=13.97 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHHHHCCCCE
Q ss_conf 0256899999853788789---99817667999999999789805
Q gi|254780875|r 205 HYRTIADGVSRHLNKDGLC---SVEIGYNQKVDVVRIFESRKLFL 246 (264)
Q Consensus 205 ~~~~ii~~~~~~L~~~G~l---~lEig~~q~~~v~~ll~~~gf~~ 246 (264)
.++.+.+..++.+--||-+ .+|+--+|.+.+.++|++.||..
T Consensus 69 ~lk~Lak~LK~~cG~GGtvK~g~IeiQGD~r~kv~~~L~~~G~~v 113 (118)
T PRK06824 69 ALKELAKELKRRCGTGGTLKDGVIEIQGDHVELLLAELLKRGFKA 113 (118)
T ss_pred HHHHHHHHHHHHHCCCCEEECCEEEEECCHHHHHHHHHHHCCCEE
T ss_conf 999999999997467961618989980737999999999879935
No 493
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=24.48 E-value=17 Score=17.16 Aligned_cols=84 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------------
Q ss_conf 68605664214211233122223--3321001333222002444201100012222222222222221------------
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKES--PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE------------ 162 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~--~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~------------ 162 (264)
++..+|=-|.++| |+.++++.+ .+++|.-.|.+.+.++...+.. ..++.+++.|+-+.-.
T Consensus 5 ~gK~alITG~s~G-IG~aia~~~a~~Ga~V~i~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (245)
T PRK12936 5 TGRKALVTGASGG-IGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKAEADL 78 (245)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-----CCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9998999274768-999999999986999999829999999999983-----8966999913799999999999999975
Q ss_pred CHHHHHHHCCHHHHHHCCCCCCCC
Q ss_conf 002333201133321001221111
Q gi|254780875|r 163 GLFDVIVSNPPYIESVIVDCLGLE 186 (264)
Q Consensus 163 ~~fD~IvsNPPYI~~~~~~~l~~~ 186 (264)
++.|++|.|-=+........++.+
T Consensus 79 g~iDiLINnAG~~~~~~~~~~~~e 102 (245)
T PRK12936 79 EGVDILVNNAGITKDGLFVRMSDE 102 (245)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHH
T ss_conf 999699989988999981209999
No 494
>KOG1198 consensus
Probab=24.41 E-value=13 Score=17.91 Aligned_cols=74 Identities=23% Similarity=0.261 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----HHH
Q ss_conf 1101246860566421421123312222333210013332220024442011000122222222222222210----023
Q gi|254780875|r 91 PRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEG----LFD 166 (264)
Q Consensus 91 ~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~----~fD 166 (264)
.+....+..-|+.-+.|.|-.++-+|+.+. +..+.+.-|.+.++++++ +|.+.-+.....|+.+.... .||
T Consensus 153 ~~~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~----lGAd~vvdy~~~~~~e~~kk~~~~~~D 227 (347)
T KOG1198 153 KKLSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKK----LGADEVVDYKDENVVELIKKYTGKGVD 227 (347)
T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHH----CCCCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 356899869999387489999999998749-747999815541689997----299651248857799998762278850
Q ss_pred HHH
Q ss_conf 332
Q gi|254780875|r 167 VIV 169 (264)
Q Consensus 167 ~Iv 169 (264)
+|+
T Consensus 228 vVl 230 (347)
T KOG1198 228 VVL 230 (347)
T ss_pred EEE
T ss_conf 999
No 495
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284 This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis . Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=24.29 E-value=13 Score=17.82 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCC-HHHHHHCCCCCCCCCCCCCCCCCCCCCCC------------CHHHHHHHC
Q ss_conf 4211233122223--33210013332220-02444201100012222222222222221------------002333201
Q gi|254780875|r 107 GTGAVCLALLKES--PFFKGVGVDISCKA-LEIAKSNAVTNGVSERFDTLQSDWFSSVE------------GLFDVIVSN 171 (264)
Q Consensus 107 GsG~i~i~la~~~--~~~~v~~~Dis~~a-l~~A~~N~~~~~~~~~i~~~~~d~~~~~~------------~~fD~IvsN 171 (264)
+|.-|+-++|+.+ .+++|..++.+.+. ++-..+-++.+|.. +..+..|+-+.-+ + .|++|.|
T Consensus 6 asRGIG~AIA~~LA~~Ga~V~i~y~~~e~~~~~~~~e~~~~G~~--a~~~~~dvs~~~~~~~~~~~~~~~~G-iDiLVNN 82 (238)
T TIGR01830 6 ASRGIGRAIALKLAKEGAKVIITYRTSEEGAEEVVEEIKELGVK--AAGVVLDVSDREDVKALVEEAEEELG-IDILVNN 82 (238)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCE--EEEEEECCCCHHHHHHHHHHHHHHHC-CEEEEEC
T ss_conf 78616799999998679959996598257888999999856975--99996038888999999999999829-9089978
No 496
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=24.23 E-value=25 Score=16.03 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 53101233211012468605664214-21123312222333210013332220024442
Q gi|254780875|r 82 VDSALAFSLPRIEKRDVVRILDLGTG-TGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 82 v~~~l~~~~~~~~~~~~~~vLDlG~G-sG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
|.+-+.......+-+...++.=+||| .|--++.-|+.....+++|+|++++.+++|++
T Consensus 170 V~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 170 VTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred ECCCHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 31584776410468999848999042766999998987488549999377789999986
No 497
>pfam04620 FlaA Flagellar filament outer layer protein Flaa. Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such connective tissue. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species.
Probab=24.21 E-value=17 Score=17.18 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=0.0
Q ss_pred HHHHHCCHHHH
Q ss_conf 33320113332
Q gi|254780875|r 166 DVIVSNPPYIE 176 (264)
Q Consensus 166 D~IvsNPPYI~ 176 (264)
++.++||||||
T Consensus 149 ~L~~~nP~yip 159 (217)
T pfam04620 149 QLVWANPPYIP 159 (217)
T ss_pred EEEEECCCCCC
T ss_conf 45884788787
No 498
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor; InterPro: IPR006548 These sequences represent the ELAV/HuD subfamily of splicing factors found in metazoa. HuD stands for the human paraneoplastic encephalomyelitis antigen D of which there are 4 variants in human . ELAV stands for the Drosophila Embryonic lethal abnormalvisual protein . ELAV-like splicing factors are also known in human as HuB (ELAV-like protein 2), HuC (ELAV-like protein 3, Paraneoplastic cerebellar degeneration-associated antigen) and HuR (ELAV-like protein 1). These genes are most closely related to the sex-lethal subfamily of splicing factors found in Dipteran insects (IPR006546 from INTERPRO). ; GO: 0003723 RNA binding.
Probab=24.11 E-value=52 Score=13.91 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=0.0
Q ss_pred CEEEE--EECCCHHHHHH-HHHHHCC-CCEEEEEECCC
Q ss_conf 78999--81766799999-9999789-80589980568
Q gi|254780875|r 221 GLCSV--EIGYNQKVDVV-RIFESRK-LFLVNAFKDYG 254 (264)
Q Consensus 221 G~l~l--Eig~~q~~~v~-~ll~~~g-f~~v~~~kD~~ 254 (264)
||++| -..++-.|.+. +||-..| ...|++++|++
T Consensus 353 GyCiFvYNLspdtde~~LWQLFgpFGAv~~VKv~rDl~ 390 (436)
T TIGR01661 353 GYCIFVYNLSPDTDEAVLWQLFGPFGAVQSVKVIRDLQ 390 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 23789861898615679987427676221057884788
No 499
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=23.66 E-value=11 Score=18.28 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 1421123312222333210013332220024442011000122222222222222210023332011
Q gi|254780875|r 106 TGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNP 172 (264)
Q Consensus 106 ~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNP 172 (264)
||||--+++......+.+|++.|..+. -..+..+..| +.+..+.-.+.+ ..+|+||-.|
T Consensus 17 gG~GmsalA~~l~~~G~~V~gsD~~~~---~~~~~L~~~G----i~v~~g~~~~~l-~~~d~vV~Sp 75 (459)
T PRK00421 17 GGIGMSGLAEVLLNLGYKVSGSDLKES---AVTQRLLELG----AIIFIGHDAENI-KGADVVVVSS 75 (459)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHCC----CEEECCCCHHHC-CCCCEEEECC
T ss_conf 688899999999968993999889899---7899999787----999779897987-9999999899
No 500
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; InterPro: IPR014183 The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284 from EC). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated as class III alcohol dehydrogenases (1.1.1.1 from EC), i.e. alcohol dehydrogenases that do not require glutathione and they tend to show poor activity for ethanol among their various substrate alcohols..
Probab=23.62 E-value=23 Score=16.30 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCCCCCCCC---CCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 421123312---222333210013332220024442
Q gi|254780875|r 107 GTGAVCLAL---LKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 107 GsG~i~i~l---a~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
|-|.|+++. |+.-...+++++|+++.-.+.|++
T Consensus 193 GlG~~Gl~~~~Ga~~a~a~ri~a~d~n~~k~~~a~~ 228 (368)
T TIGR02818 193 GLGGIGLSVIQGAKLAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred ECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 210467788764322035117998317579999976
Done!