HHsearch alignment for GI: 254780875 and conserved domain: pfam00145
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=97.20 E-value=0.001 Score=44.87 Aligned_cols=140 Identities=18% Similarity=0.116 Sum_probs=80.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHH
Q ss_conf 6056642142112331222233321-00133322200244420110001222222222222222---1002333201133
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLKESPFFK-GVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNPPY 174 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~~~~~~~-v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNPPY 174 (264)
T Consensus 1 ~~vidlF~G~GG~s~G~~~a--G~~~~~a~e~d~~a~~ty~~N~~~~~--------~~Di~~~~~~~~~~~Dvl~ggpPC 70 (319)
T pfam00145 1 FKFIDLFAGIGGFRLGLEQA--GFECVAANEIDKSAAKTYEANFPKVP--------IGDITLIDIKDIPDIDILTGGFPC 70 (319)
T ss_pred CCEEEECCCCCHHHHHHHHC--CCEEEEEEECCHHHHHHHHHHCCCCC--------CCCCCCCCHHHCCCCCEEEECCCC
T ss_conf 95899780707899999987--99299998389999999998779996--------177540887478886889868999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC--------CCHHHHHHHHHHHCCCCE
Q ss_conf 321001221111123575433210112321025689999985378878999817--------667999999999789805
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG--------YNQKVDVVRIFESRKLFL 246 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig--------~~q~~~v~~ll~~~gf~~ 246 (264)
T Consensus 71 Q~fS~ag~-~~~--~~d~r~~L---------~~~~~~~v-~~~~Pk-~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v 136 (319)
T pfam00145 71 QDFSIAGK-QKG--FEDTRGTL---------FFEIIRII-KEKKPK-AFLLENVKGLLSHDNGNTLNVILETLEELGYSV 136 (319)
T ss_pred CCCCCCCC-CCC--CCCCCCHH---------HHHHHHHH-HHHCCC-EEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 87240155-688--53433138---------99999987-751986-887304087864453058999999998679855
Q ss_pred EEEE---ECC---CCCCEEEEE
Q ss_conf 8998---056---899759999
Q gi|254780875|r 247 VNAF---KDY---GGNDRVLLF 262 (264)
Q Consensus 247 v~~~---kD~---~g~~R~vi~ 262 (264)
T Consensus 137 ~~~vlna~dyGvPQ~R~R~fii 158 (319)
T pfam00145 137 SWKVLNASDYGVPQNRERVFIV 158 (319)
T ss_pred CEEECCHHHCCCCCCCCEEEEE
T ss_conf 3210778880898764189999