HHsearch alignment for GI: 254780875 and conserved domain: pfam01170
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.59 E-value=6.9e-16 Score=124.98 Aligned_cols=145 Identities=21% Similarity=0.230 Sum_probs=101.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 65553101233211012468605664214211233122223332100133322200244420110001222222222222
Q gi|254780875|r 79 ELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF 158 (264)
Q Consensus 79 E~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~ 158 (264)
T Consensus 14 ~~lAa~l~~la----~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~ 89 (171)
T pfam01170 14 ATLARAMVNLA----GWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAA 89 (171)
T ss_pred HHHHHHHHHHH----CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 99999999985----89999978868998789999999961358953675879999999999998289984699976665
Q ss_pred CC--CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE-CCCHHHHH
Q ss_conf 22--2100233320113332100122111112357543321011232102568999998537887899981-76679999
Q gi|254780875|r 159 SS--VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI-GYNQKVDV 235 (264)
Q Consensus 159 ~~--~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi-g~~q~~~v 235 (264)
T Consensus 90 ~l~~~~~~~d~Iv~nPPYG~r~---~~~~---------------~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~---~~ 146 (171)
T pfam01170 90 DLPLLNGSVDTIVTDPPYGIRI---GSKG---------------ALEKLYPAFLDEAKRVLR--GRLVFATPEKK---DF 146 (171)
T ss_pred HCCCCCCCCEEEEECCCCCCCC---CCHH---------------HHHHHHHHHHHHHHHHCC--CCEEEEEECCH---HH
T ss_conf 3879878831899889820113---6545---------------699999999999998689--97899996868---99
Q ss_pred HHHHHHCCCCEEEEE
Q ss_conf 999997898058998
Q gi|254780875|r 236 VRIFESRKLFLVNAF 250 (264)
Q Consensus 236 ~~ll~~~gf~~v~~~ 250 (264)
T Consensus 147 ~k~~~~~~~r~~~~~ 161 (171)
T pfam01170 147 EKAARERGLRKKHEF 161 (171)
T ss_pred HHHHCCHHHCCEEEE
T ss_conf 998550012350489