HHsearch alignment for GI: 254780875 and conserved domain: pfam01728
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=97.98 E-value=4.1e-05 Score=54.07 Aligned_cols=138 Identities=18% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------CCCHHHH
Q ss_conf 6860566421421123312222333210013332220024442011000122222222222222---------2100233
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------VEGLFDV 167 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~~~~fD~ 167 (264)
T Consensus 21 ~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~~-----------~~-~~~~~i~gDi~~~~~~~~i~~~~~~~~Dl 88 (176)
T pfam01728 21 GGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPMK-----------PI-QGVTFLRGDITDPETLEKLLELLPGKVDL 88 (176)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCC-----------CC-CCCEEECCCCCCHHHHHHHHHHCCCCCCE
T ss_conf 9999999689997699999985668739999734465-----------67-78456516766878999999973998468
Q ss_pred HHHCC-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--CCCHHHHHHHHHHHCCC
Q ss_conf 32011-3332100122111112357543321011232102568999998537887899981--76679999999997898
Q gi|254780875|r 168 IVSNP-PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--GYNQKVDVVRIFESRKL 244 (264)
Q Consensus 168 IvsNP-PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g~~q~~~v~~ll~~~gf 244 (264)
T Consensus 89 V~sD~a~~~~g~--~~~d-~~~-------------s~~L~~~~l~~a~~~L~~gG~fv~K~f~~~~~~~~l~~~l~~-~F 151 (176)
T pfam01728 89 VLCDGAPNVSGL--ENTD-SFI-------------SLRLVLAALLLALEVLRPGGNFVVKLFKGFEFSVELLYKLKK-GF 151 (176)
T ss_pred EEECCCCCCCCC--CCHH-HHH-------------HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHH-CC
T ss_conf 973366565677--3347-899-------------999999999999998243763999998278764999999983-17
Q ss_pred CEEEEEEC----CCCCCEEEEEE
Q ss_conf 05899805----68997599997
Q gi|254780875|r 245 FLVNAFKD----YGGNDRVLLFC 263 (264)
Q Consensus 245 ~~v~~~kD----~~g~~R~vi~~ 263 (264)
T Consensus 152 ~~v~~~KP~aSR~~s~E~Yiv~~ 174 (176)
T pfam01728 152 EKVGIFKPPASRPSSSEEYLVCL 174 (176)
T ss_pred CEEEEECCCCCCCCCCEEEEEEC
T ss_conf 88999868997998866999962