HHsearch alignment for GI: 254780875 and conserved domain: pfam01739

>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=98.35  E-value=2.1e-07  Score=69.21  Aligned_cols=111  Identities=23%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             CCCCCCCEEEEECCCCC----CCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHCCCCC--------------------
Q ss_conf             12468605664214211----233122223-----3321001333222002444201100--------------------
Q gi|254780875|r   94 EKRDVVRILDLGTGTGA----VCLALLKES-----PFFKGVGVDISCKALEIAKSNAVTN--------------------  144 (264)
Q Consensus        94 ~~~~~~~vLDlG~GsG~----i~i~la~~~-----~~~~v~~~Dis~~al~~A~~N~~~~--------------------  144 (264)
T Consensus        27 ~~~~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~  106 (194)
T pfam01739        27 RNSRRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAG  106 (194)
T ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCC
T ss_conf             88995599973688995189999999997432578744999973988999999878988999845999999962860789


Q ss_pred             -------CCCCCCCCCCCCCCCCC-CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             -------01222222222222222-1002333201133321001221111123575433210112321025689999985
Q gi|254780875|r  145 -------GVSERFDTLQSDWFSSV-EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRH  216 (264)
Q Consensus       145 -------~~~~~i~~~~~d~~~~~-~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~  216 (264)
T Consensus       107 ~~~~i~~~lr~~V~F~~~NL~~~~~~~~~DlIfC------RNVlIYF~~~------------------~~~~vl~~l~~~  162 (194)
T pfam01739       107 GGYRVKPEIKEMVLFEYHNLLDYPPLGDFDVIFC------RNVLIYFDEE------------------TQRKILNRFASA  162 (194)
T ss_pred             CCEEECHHHHCCCEEEECCCCCCCCCCCEEEEEE------CCEEEECCHH------------------HHHHHHHHHHHH
T ss_conf             9487688997116685466556887675039998------0210137999------------------999999999998


Q ss_pred             CCCCCEEEEEEC
Q ss_conf             378878999817
Q gi|254780875|r  217 LNKDGLCSVEIG  228 (264)
Q Consensus       217 L~~~G~l~lEig  228 (264)
T Consensus       163 L~~gG~L~lG~~  174 (194)
T pfam01739       163 LKPGGYLFLGHS  174 (194)
T ss_pred             HCCCCEEEEECC
T ss_conf             489949998075