HHsearch alignment for GI: 254780875 and conserved domain: pfam02384

>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=99.31  E-value=7e-12  Score=98.62  Aligned_cols=160  Identities=21%  Similarity=0.331  Sum_probs=104.0

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC-------CCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             05122356555310123321101246860566421421123312222-------33321001333222002444201100
Q gi|254780875|r   72 FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKE-------SPFFKGVGVDISCKALEIAKSNAVTN  144 (264)
Q Consensus        72 LIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~-------~~~~~v~~~Dis~~al~~A~~N~~~~  144 (264)
T Consensus        29 fTPr~Vv~lmv~ll--------~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lh  100 (312)
T pfam02384        29 YTPREVSKLIVELL--------EPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILH  100 (312)
T ss_pred             CCCHHHHHHHHHHH--------CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf             88789999999982--------8999998821687733789999999998437855655636889989999999999984


Q ss_pred             CCC-CCCCCCCCCCCCCC----CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCC
Q ss_conf             012-22222222222222----100233320113332100122111112357543321011-232102568999998537
Q gi|254780875|r  145 GVS-ERFDTLQSDWFSSV----EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGI-DGLSHYRTIADGVSRHLN  218 (264)
Q Consensus       145 ~~~-~~i~~~~~d~~~~~----~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~-dGl~~~~~ii~~~~~~L~  218 (264)
T Consensus       101 gi~~~~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~---~~~-~~~~~~~~~~~~~~~~~e-~~Fiqh~l~~Lk  175 (312)
T pfam02384       101 GIEYNDFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDAN---DNL-ENDPRFRAYGVPPKSNAD-FAFLQHIIYHLS  175 (312)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC---CCC-CCCCCHHCCCCCCCCCHH-HHHHHHHHHHCC
T ss_conf             798874552147765576766545511898378646676654---321-027211036878887442-999999998569


Q ss_pred             CCCEEEEEECC------CHHHHHHHHHHHCCC
Q ss_conf             88789998176------679999999997898
Q gi|254780875|r  219 KDGLCSVEIGY------NQKVDVVRIFESRKL  244 (264)
Q Consensus       219 ~~G~l~lEig~------~q~~~v~~ll~~~gf  244 (264)
T Consensus       176 ~~GraaiVlp~g~Lf~~~~e~~iR~~lle~~~  207 (312)
T pfam02384       176 PNGRAAVVLPNGVLFRGGAEGDIRKALVEKDL  207 (312)
T ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             99769999558231046508899999997597