HHsearch alignment for GI: 254780875 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.91 E-value=2e-25 Score=187.73 Aligned_cols=158 Identities=28% Similarity=0.377 Sum_probs=124.7
Q ss_pred EEEEEEECCCCCHH---HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 37677504620512---235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 62 NVRLTLSSDTFEPR---PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 62 ~~~f~v~~~vLIPR---peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
T Consensus 1 ~l~~~t~pGVFS~~~lD~Gt~lLl~~l~~--------~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~ 72 (170)
T pfam05175 1 ELTFKTLPGVFSHGRLDIGSRLLLSHLPK--------PLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESAR 72 (170)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHCCCC--------CCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHH
T ss_conf 92899559887999879899999970897--------7899499977648298999999789867985154499999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201100012222222222222221-0023332011333210012211111235754332101123210256899999853
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSSVE-GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHL 217 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~~~-~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L 217 (264)
T Consensus 73 ~N~~~n~l~-~v~v~~~D~~~~~~~~~fD~IvsNPP~h~g---------------------~~~~~~~~~~~i~~A~~~L 130 (170)
T pfam05175 73 ANLAANGLE-NGEVFWSDLYSAVEPGKFDLIISNPPFHAG---------------------KATDYDVAQRFIAGAARHL 130 (170)
T ss_pred HHHHHHCCC-EEEEEECCCCCCCCCCCEEEEEECCCCCCC---------------------CCCCHHHHHHHHHHHHHHC
T ss_conf 999980998-489997446665778866089989772114---------------------2032899999999999961
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 78878999817667999999999789805899805
Q gi|254780875|r 218 NKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKD 252 (264)
Q Consensus 218 ~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD 252 (264)
T Consensus 131 ~pgG~l~~V~n~~l~y--~~~l~~~-f~~v~~~~~ 162 (170)
T pfam05175 131 KPGGELWIVANRHLGY--PSLLEEL-FGNVEVLAK 162 (170)
T ss_pred CCCCEEEEEEECCCCC--HHHHHHH-HCCEEEEEE
T ss_conf 6497999999899994--7999986-088899973