HHsearch alignment for GI: 254780875 and conserved domain: pfam05185
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=96.73 E-value=0.0013 Score=44.32 Aligned_cols=104 Identities=23% Similarity=0.225 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCCCCCCC---CCC-CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHC
Q ss_conf 6860566421421123312---222-333210013332220024442011000122222222222222-21002333201
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLAL---LKE-SPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-VEGLFDVIVSN 171 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~l---a~~-~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-~~~~fD~IvsN 171 (264)
T Consensus 186 ~~~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~~p~k~Di~VSE 265 (447)
T pfam05185 186 GTLVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWKGPEKADILVSE 265 (447)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCEEEEE
T ss_conf 75699998589648999999999981996699999568779999999850543178069990800057998773589752
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 13332100122111112357543321011232102568999998537887899
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS 224 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~ 224 (264)
T Consensus 266 -----------LLGS----------FGD-NELS--PECLdg~q~~lk~~gIsI 294 (447)
T pfam05185 266 -----------LLGS----------FGD-NELS--PECLDGAQRFLKPDGISI 294 (447)
T ss_pred -----------CCCC----------CCC-CCCC--HHHHHHHHHHCCCCCEEE
T ss_conf -----------1166----------666-5579--778778997468984682