HHsearch alignment for GI: 254780875 and conserved domain: pfam06859
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=93.34 E-value=0.058 Score=33.37 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC-------------
Q ss_conf 0233320113332100122111112357543321011232102568999998537887899981766-------------
Q gi|254780875|r 164 LFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN------------- 230 (264)
Q Consensus 164 ~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~------------- 230 (264)
T Consensus 1 ~fD~i~c--------------lSvtkW---IHLN~GD~Gl~---~~f~~~~~~l~pgg~lilEpQ~w~sY~k~kkl~~~~ 60 (110)
T pfam06859 1 EFDVILC--------------LSVTKW---VHLNWGDEGLK---RFFRRIYRLLRPGGILILEPQPWDSYKKRKKLSETI 60 (110)
T ss_pred CCCEEEE--------------EEEEEE---EECCCCCHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCHHH
T ss_conf 9658999--------------662024---55546428899---999999996188988999678846688773147999
Q ss_pred ---------HHHHHHHHHH--HCCCCEEEEEECCC----CCCEEEE
Q ss_conf ---------7999999999--78980589980568----9975999
Q gi|254780875|r 231 ---------QKVDVVRIFE--SRKLFLVNAFKDYG----GNDRVLL 261 (264)
Q Consensus 231 ---------q~~~v~~ll~--~~gf~~v~~~kD~~----g~~R~vi 261 (264)
T Consensus 61 ~~ny~~I~~rPd~F~~yLl~~evGF~s~e~~~~~~~~skGF~Rpi~ 106 (110)
T pfam06859 61 YKNYERIKLKPDQFEEYLLSPEVGFSSYELVGVPNNTSKGFKRPIY 106 (110)
T ss_pred HHHHHHHEECHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEE
T ss_conf 8535542778788899980546680789994378888888777545