HHsearch alignment for GI: 254780875 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=99.24 E-value=1.1e-11 Score=97.24 Aligned_cols=170 Identities=15% Similarity=0.181 Sum_probs=120.4
Q ss_pred CCHHHHCCCEEEEEEEEEEECC--CCCHHHHHHHHHHHHC-----------CCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 8376853631442376775046--2051223565553101-----------23321101246860566421421123312
Q gi|254780875|r 49 ESIHRILGWRDFYNVRLTLSSD--TFEPRPETELLVDSAL-----------AFSLPRIEKRDVVRILDLGTGTGAVCLAL 115 (264)
Q Consensus 49 ~Pl~YIlg~~~F~~~~f~v~~~--vLIPRpeTE~lv~~~l-----------~~~~~~~~~~~~~~vLDlG~GsG~i~i~l 115 (264)
T Consensus 43 ~~H~diIGk~--~Gs~v~ss~g~~~~vl~Pt~e~~t~~mprrtQIiYpkD~s~I~~~ldi~PG~~VlEaGtGSGsLT~~L 120 (309)
T pfam08704 43 LRHSDIIGKR--YGSKVSSSKGGFVYVLQPTPELWTLALPHRTQILYTPDISLIIMMLELKPGSVVCESGTGSGSLSHAI 120 (309)
T ss_pred EEHHHHCCCC--CCCEEEECCCCEEEEECCCHHHHHHCCCCCCCEECCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHH
T ss_conf 7789923899--97589938995799978999999844888773255600999999809899999998367842999999
Q ss_pred CCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC-C----CCCHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf 2223-3321001333222002444201100012222222222222-2----21002333201133321001221111123
Q gi|254780875|r 116 LKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS-S----VEGLFDVIVSNPPYIESVIVDCLGLEVRD 189 (264)
Q Consensus 116 a~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~-~----~~~~fD~IvsNPPYI~~~~~~~l~~~v~~ 189 (264)
T Consensus 121 aravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~~~~~D~VfLDlp---------------- 184 (309)
T pfam08704 121 ARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKADAVFLDLP---------------- 184 (309)
T ss_pred HHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCCCCCEEEECCC----------------
T ss_conf 9974888659998447899999999998749875058898520013666445664358997589----------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEE-EECCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 57543321011232102568999998537-8878999-81766799999999978980589980
Q gi|254780875|r 190 FDPRISLDGGIDGLSHYRTIADGVSRHLN-KDGLCSV-EIGYNQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 190 ~EP~~AL~gg~dGl~~~~~ii~~~~~~L~-~~G~l~l-Eig~~q~~~v~~ll~~~gf~~v~~~k 251 (264)
T Consensus 185 -~PW~--------------ai~~~~~~Lk~~Gg~l~~f~P~ieQv~r~~~aL~~~gF~~i~t~E 233 (309)
T pfam08704 185 -APWE--------------AIPHAAKALKVEGGRLCSFSPCIEQVQRTCLALAALGFTEIETIE 233 (309)
T ss_pred -CHHH--------------HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf -9799--------------889999860689968999919899999999999977997407999