RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase
(methyltransferase) protein [Candidatus Liberibacter asiaticus str.
psy62]
(264 letters)
>gnl|CDD|181780 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 270 bits (693), Expect = 3e-73
Identities = 99/255 (38%), Positives = 139/255 (54%), Gaps = 6/255 (2%)
Query: 11 LCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSD 70
L V GLS ++++P+ L + + R E + ILG +F+ + +S
Sbjct: 26 LAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVSPG 85
Query: 71 TFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDIS 130
PRPETE LV+ AL + ++ +R+LDLGTG+GA+ LAL KE P + VDIS
Sbjct: 86 VLIPRPETEELVEWALE----ALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDIS 141
Query: 131 CKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGL-FDVIVSNPPYIESVIVDCLGLEVRD 189
+AL +A+ NA +G+ R + LQ DWF + G FD+IVSNPPYI + L EVRD
Sbjct: 142 PEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRD 200
Query: 190 FDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNA 249
+P ++L GG DGL YR I + R+L G +EIGY+Q V + + V
Sbjct: 201 HEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVET 260
Query: 250 FKDYGGNDRVLLFCR 264
KD G DRV+L R
Sbjct: 261 RKDLAGRDRVVLGRR 275
>gnl|CDD|163311 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3.
Length = 251
Score = 258 bits (661), Expect = 1e-69
Identities = 102/252 (40%), Positives = 138/252 (54%), Gaps = 7/252 (2%)
Query: 11 LCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSD 70
L V G +++ P+ L + + R K E + ILG R+FY + +S
Sbjct: 6 LAHVLGKDRTDLLLHPEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPG 65
Query: 71 TFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDIS 130
PRP+TE LV++AL R++K + R+LDLGTG+GA+ LAL KE P + VDIS
Sbjct: 66 VLIPRPDTEELVEAALE----RLKKGPL-RVLDLGTGSGAIALALAKERPDARVTAVDIS 120
Query: 131 CKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGL-FDVIVSNPPYIESVIVDCLGLEVRD 189
+AL +A+ NA G+ + LQSDWF + G FD+IVSNPPYI + L EVR
Sbjct: 121 PEALAVARKNAARLGL-DNVTFLQSDWFEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRF 179
Query: 190 FDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNA 249
+PR++L GG DGL YR I R L G +EIGY+Q V +FE+ V
Sbjct: 180 HEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVET 239
Query: 250 FKDYGGNDRVLL 261
KD G DRV+L
Sbjct: 240 RKDLAGKDRVVL 251
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain.
Length = 284
Score = 159 bits (403), Expect = 9e-40
Identities = 83/234 (35%), Positives = 128/234 (54%), Gaps = 6/234 (2%)
Query: 30 LDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFS 89
L ++ + ++R +K + +LG ++FY + ++ PRPETE LV+ ALA S
Sbjct: 50 LTPDEKERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALA-S 108
Query: 90 LPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSER 149
L I + ++ ILDLGTG+G + LAL E P + + VDIS AL +A+ NA N + R
Sbjct: 109 L--ISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHR 166
Query: 150 FDTLQSDWFSSVEGL-FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRT 208
+ +QS+ F + G D+IVSNPPYI+ + L VR F+P ++L GG DGL+ R
Sbjct: 167 VEFIQSNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQ 225
Query: 209 IADGVSRHLNKDGLCSVEIGYNQKVDVVR-IFESRKLFLVNAFKDYGGNDRVLL 261
I + +L +G EIG Q+ + + + V +D G +RV+L
Sbjct: 226 IIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDLNGKERVVL 279
>gnl|CDD|167237 PRK01544, PRK01544, bifunctional N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase/tRNA
(m7G46) methyltransferase; Reviewed.
Length = 506
Score = 143 bits (363), Expect = 3e-35
Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 21/240 (8%)
Query: 44 RSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALA---------------- 87
R LKHE I I G ++FY+ ++ PR +TE+LVD
Sbjct: 65 RRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNP 124
Query: 88 -FSLPRIEKRDVVR---ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVT 143
F I + IL+LGTG+G + ++LL E P + DIS A+E+AKSNA+
Sbjct: 125 CFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK 184
Query: 144 NGVSERFDTLQSDWFSSVEGL-FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDG 202
V++R + S+WF ++E FD IVSNPPYI + +E +++P I+L DG
Sbjct: 185 YEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDG 244
Query: 203 LSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLF 262
L Y IA+ + L +G +EIG+ Q+ V +IF + + +KD G+ RV+L
Sbjct: 245 LQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304
>gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase
fusion protein; Provisional.
Length = 423
Score = 123 bits (309), Expect = 5e-29
Identities = 91/239 (38%), Positives = 120/239 (50%), Gaps = 17/239 (7%)
Query: 26 PDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSA 85
PD V RQR R L E + ILG R+FY R ++ + PRPETE LV++
Sbjct: 191 PDEV---RQR--ADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAV 245
Query: 86 LAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG 145
LA LP + R+ DLGTG+GAV + + E P DIS ALE A+ NA G
Sbjct: 246 LA-RLP-----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG 299
Query: 146 VSERFDTLQSDWFSS---VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDG 202
R + WF + EG +D+IVSNPPYIE+ L ++R F+P+I+L DG
Sbjct: 300 A--RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLR-FEPQIALTDFSDG 356
Query: 203 LSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLL 261
LS RT+A G L + G +E G++Q V + V D G DRV L
Sbjct: 357 LSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTL 415
>gnl|CDD|163310 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase,
ribosomal protein L3-specific. Members of this protein
family methylate ribosomal protein L3 on a glutamine
side chain. This family is related to HemK, a
protein-glutamine methyltranferase for peptide chain
release factors.
Length = 284
Score = 108 bits (273), Expect = 1e-24
Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 11/162 (6%)
Query: 74 PR-PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKG--VGVDIS 130
PR P EL+ + A P +E V RILDL TG+G C+A+ F + VDIS
Sbjct: 101 PRSPIAELI-EDGFA---PWLEPEPVKRILDLCTGSG--CIAIACAYAFPEAEVDAVDIS 154
Query: 131 CKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGL-FDVIVSNPPYIESVIVDCLGLEVRD 189
AL +A+ N +G+ +R +QSD F+++ G +D+IVSNPPY+++ + L E
Sbjct: 155 PDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVDAEDMADLPAEYH- 213
Query: 190 FDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQ 231
+P ++L G DGL R I + HLN++G+ VE+G +
Sbjct: 214 HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM 255
>gnl|CDD|183320 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 307
Score = 104 bits (261), Expect = 3e-23
Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 11/162 (6%)
Query: 74 PR-PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKG--VGVDIS 130
PR P EL+ D F+ P +E V RILDL TG+G C+A+ F VDIS
Sbjct: 113 PRSPIAELIEDG---FA-PWLEDPPVTRILDLCTGSG--CIAIACAYAFPDAEVDAVDIS 166
Query: 131 CKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGL-FDVIVSNPPYIESVIVDCLGLEVRD 189
AL +A+ N +G+ +R ++SD F+++ G +D+IVSNPPY+++ + L E R
Sbjct: 167 PDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYR- 225
Query: 190 FDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQ 231
+P ++L G DGL R I +L +DG+ VE+G ++
Sbjct: 226 HEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR 267
>gnl|CDD|163416 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5)
methyltransferase, unknown substrate-specific. This
protein family is closely related to two different
families of protein-(glutamine-N5) methyltransferase.
The first is PrmB, which modifies ribosomal protein L3
in some bacteria. The second is PrmC (HemK), which
modifies peptide chain release factors 1 and 2 in most
bacteria and also in eukaryotes. The glutamine side
chain-binding motif NPPY shared by PrmB and PrmC is
N[VAT]PY in this family. The protein substrate is
unknown.
Length = 251
Score = 99.9 bits (249), Expect = 6e-22
Identities = 63/195 (32%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 54 ILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCL 113
+LGW +F +R+ + F PR TE LVD A A + PR VV DL G+GAV
Sbjct: 46 VLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVV---DLCCGSGAVGA 102
Query: 114 ALLKESPFFKGVGVDISCKALEIAKSNAVTNGVS----ERFDTLQSDWFSSVEGLFDVIV 169
AL + DI A+ A+ N G + + +D L + + G D++
Sbjct: 103 ALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTA----LRGRVDILA 158
Query: 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGY 229
+N PY+ + + + E RD +PR++LDGG DGL R +A G L G VE
Sbjct: 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218
Query: 230 NQKVDVVRIFESRKL 244
Q V F L
Sbjct: 219 RQAPLAVEAFARAGL 233
>gnl|CDD|184932 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 80.3 bits (199), Expect = 5e-16
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 17/157 (10%)
Query: 67 LSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVG 126
L+ + +EP ++ LL ++A+ +K D R+L++GTG+G V + K VG
Sbjct: 1 LNDEVYEPAEDSFLLAENAV------DKKGD--RVLEVGTGSGIVAIVAAKNGKKV--VG 50
Query: 127 VDISCKALEIAKSNAVTNGVSER-FDTLQSDWFSSVEG-LFDVIVSNPPYIESVIVDCLG 184
VDI+ A+E AK NA N + + ++SD F G FDVI+ NPPY+ +
Sbjct: 51 VDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLPTEEE---- 106
Query: 185 LEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDG 221
E D +L GG DG D V R+L G
Sbjct: 107 -EEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142
>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase. The
gene hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. This
model represents an archaeal and eukaryotic protein
family that lacks an N-terminal domain found in HemK and
its eubacterial homologs. It is found in a single copy
in the first six completed archaeal and eukaryotic
genomes.
Length = 179
Score = 66.8 bits (163), Expect = 5e-12
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 72 FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISC 131
+EP ++ LL + L ++ DV L++G GTG V + L + + DI+
Sbjct: 2 YEPAEDSLLLEAN-----LRELKPDDV---LEIGAGTGLVAIRLKGKGK--CILTTDINP 51
Query: 132 KALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFD 191
A++ + NA N V + +D F V G FDVI+ NPPY+ G + D
Sbjct: 52 FAVKELRENAKLNNVGLDV--VMTDLFKGVRGKFDVILFNPPYLPLEDDLRRG-DWLDV- 107
Query: 192 PRISLDGGIDGLSHYRTIADGVSRHLNKDG 221
++DGG DG D + L + G
Sbjct: 108 ---AIDGGKDGRKVIDRFLDELPEILKEGG 134
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 65.5 bits (160), Expect = 1e-11
Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 28/148 (18%)
Query: 63 VRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVV---RILDLGTGTGAVCLALLKES 119
L + + P+ +T+LL D+ + R+LDL TG+GA+ +A
Sbjct: 7 DALLRAPGVYRPQEDTQLLADAL--------AAEGLGPGRRVLDLCTGSGALAVAAAA-- 56
Query: 120 PFFKGVG----VDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGL-FDVIVSNPPY 174
G G VDIS +A+ A+ NA+ GV D + DW +VE FDV+VSNPPY
Sbjct: 57 ---AGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNPPY 111
Query: 175 IESVIVDCLGLEVRDFDPRISLDGGIDG 202
V P + D G DG
Sbjct: 112 -----VPAPPDAPPSRGPARAWDAGPDG 134
>gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase;
Provisional.
Length = 342
Score = 54.2 bits (131), Expect = 3e-08
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
++LD+G G G + L + SP + D+S ALE +++ NG+ + S+ FS
Sbjct: 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEG--EVFASNVFS 256
Query: 160 SVEGLFDVIVSNPPY 174
++G FD+I+SNPP+
Sbjct: 257 DIKGRFDMIISNPPF 271
>gnl|CDD|148126 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 51.5 bits (124), Expect = 2e-07
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 73 EPRPETELLV---DSALAF-------------SLPRIEKRDVVRILDLGTGTGAVCLALL 116
E PE + + D +AF +L + K +LD+G G+G + +A L
Sbjct: 121 EDYPEPDAVNIELDPGMAFGTGTHPTTALCLEALESLVKPGE-TVLDVGCGSGILAIAAL 179
Query: 117 KESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSN 171
K K VGVDI A+ AK NA NGV + + EG DV+V+N
Sbjct: 180 KLGAK-KVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPG--DLPEGKADVVVAN 231
>gnl|CDD|161861 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis.
Length = 288
Score = 50.2 bits (120), Expect = 6e-07
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 74 PRPETELLV--DSALAF-------------SLPRI-EKRDVVRILDLGTGTGAVCLALLK 117
P E L++ D LAF L + K V +D+G G+G + +A LK
Sbjct: 122 PSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNV--IDVGCGSGILSIAALK 179
Query: 118 ESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSN 171
K VG+DI A+E A+ NA N VS+R +EG DVIV+N
Sbjct: 180 LGAA-KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVAN 232
>gnl|CDD|179053 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 47.8 bits (115), Expect = 3e-06
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 93 IEKRDVV--RILDLGTGTGAVCLALLKESPFFKG----VGVDISCKALEIAKSNAVTNGV 146
+EK + +LD+G G+G + +A K G + VDI +A+E A+ NA NGV
Sbjct: 113 LEKLVLPGKTVLDVGCGSGILAIAAAK-----LGAKKVLAVDIDPQAVEAARENAELNGV 167
Query: 147 SERFDTLQSDWFSSVEGLFDVIVSN 171
Q D DVIV+N
Sbjct: 168 ELNVYLPQGD------LKADVIVAN 186
>gnl|CDD|149354 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 44.7 bits (106), Expect = 3e-05
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 102 LDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS--NAVTNGVSERFDTLQSDWFS 159
LD+G GTG + ALL+ P + GVDIS ALE A A+ + R D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 160 SVEGLFDVIVSN 171
G FDV+V++
Sbjct: 61 LDPGSFDVVVAS 72
>gnl|CDD|162684 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology.
Length = 240
Score = 43.8 bits (104), Expect = 4e-05
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDW-- 157
+LD+G GTG + ALLK P + + +DIS L AK+ +SE + D
Sbjct: 37 SVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTK-----LSENVQFICGDAEK 91
Query: 158 FSSVEGLFDVIVSN 171
+ FD+IVSN
Sbjct: 92 LPLEDSSFDLIVSN 105
>gnl|CDD|181047 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 41.7 bits (99), Expect = 2e-04
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
RILD G G G++ + L + K V DIS + +E A+ A G++ D
Sbjct: 66 RILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD-LE 122
Query: 160 SVEGLFDVIV 169
S+ G FD +V
Sbjct: 123 SLLGRFDTVV 132
>gnl|CDD|178932 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 40.9 bits (97), Expect = 3e-04
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 100 RILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSD 156
++LDL GTG + +AL K + VG+D S L + + G+S + +Q D
Sbjct: 54 KVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGD 111
>gnl|CDD|184963 PRK15001, PRK15001, SAM-dependent 23S ribosomal RNA mG1835
methyltransferase; Provisional.
Length = 378
Score = 40.0 bits (93), Expect = 6e-04
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN--GVSERFDTLQSDWF 158
I+DLG G G + L LL ++P K V VD S A+ ++ N TN +R + + ++
Sbjct: 232 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 291
Query: 159 SSVEGL-FDVIVSNPPY 174
S VE F+ ++ NPP+
Sbjct: 292 SGVEPFRFNAVLCNPPF 308
>gnl|CDD|150199 pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase.
RNA cap guanine-N2 methyltransferases such as
Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2
catalyse methylation of the exocyclic N2 amine of
7-methylguanosine.
Length = 165
Score = 40.0 bits (94), Expect = 7e-04
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
ILD+ G G + F +G+DI+ + L A+ NA GVS+R + DWF
Sbjct: 3 IILDVFCGAGGNTIQFANV--FCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFE 60
Query: 160 SVEGL------FDVIVSNPPY 174
+ L +D + +PP+
Sbjct: 61 LLAKLKFGKIPYDCVFLSPPW 81
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA.
Length = 431
Score = 39.8 bits (93), Expect = 8e-04
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 29/166 (17%)
Query: 29 VLDDRQRFFLTNAIVRSLKHESIHRILG-----------WRDFYN-VRLTLSSDTF-EPR 75
L+ ++R+ +I +++ E + I G + + +LS+ F +
Sbjct: 214 ALELQERYPDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKSGDLSFSLSARDFFQVN 273
Query: 76 PE-TELLVDSAL-AFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKA 133
E LVD AL A L E ++D G G L L K++ VG+++ ++
Sbjct: 274 SGQNEKLVDRALEALELQGEE-----LVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPES 326
Query: 134 LEIAKSNAVTNG------VSERFDTLQSDWFSSVEGLFDVIVSNPP 173
+E A+ NA NG ++ +T+ + + DV++ +PP
Sbjct: 327 VEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI-PDVLLLDPP 371
>gnl|CDD|149353 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 95
Score = 39.6 bits (93), Expect = 8e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 15/76 (19%)
Query: 102 LDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV 161
LD+G GTG + AL + P + GVD+S + L +A+ A +G+ + D
Sbjct: 1 LDVGCGTGLLTEALARL-PGAQVTGVDLSPEMLALARKRAQEDGL----TFVVGD----A 51
Query: 162 EGL------FDVIVSN 171
E L FDV+VS+
Sbjct: 52 EDLPFPDESFDVVVSS 67
>gnl|CDD|161812 TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltransferase. This
enzyme is responsible for two methylations of a
characteristic guanine of most tRNA molecules. The
activity has been demonstrated for eukaryotic and
archaeal proteins, which are active when expressed in E.
coli, a species that lacks this enzyme. At least one
Eubacterium, Aquifex aeolicus, has an ortholog, as do
all completed archaeal genomes.
Length = 374
Score = 39.1 bits (91), Expect = 0.001
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 95 KRDVVRILDLGTGTGAVCLALLKESPFF-KGVGVDISCKALEIAKSNAVTNGVS--ERFD 151
K + I D + +G + E + DI+ KA+E K+N N V E +
Sbjct: 42 KECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPN 101
Query: 152 TLQSDWFSSVEGLFDVIVSNP-----PYIESVI 179
++ F VI +P P+++S I
Sbjct: 102 EDAANVLRYRNRKFHVIDIDPFGTPAPFVDSAI 134
>gnl|CDD|128443 smart00138, MeTrc, Methyltransferase, chemotaxis proteins.
Methylates methyl-accepting chemotaxis proteins to form
gamma-glutamyl methyl ester residues.
Length = 264
Score = 38.4 bits (90), Expect = 0.002
Identities = 43/168 (25%), Positives = 58/168 (34%), Gaps = 35/168 (20%)
Query: 29 VLDDRQRFFLTNAIVRSLKHESIHRILGWRDF---YN----------VRLTLSSDT---- 71
VL D +R L + + R L R+LG +DF + L T
Sbjct: 18 VLTDYKRTLLQSRLSRRL------RVLGLKDFSEYLELLTSHRGEEELAELLDLMTTNET 71
Query: 72 --FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTG------AVCLALLKE---SP 120
F E L + L + VRI G TG A+ LA P
Sbjct: 72 RFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREP 131
Query: 121 FFKGVGVDISCKALEIAKSNAVTNGVSERF-DTLQSDWFSSVEGLFDV 167
K + DI KALE A++ E L + +FS VE + V
Sbjct: 132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179
>gnl|CDD|179832 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA
methyltransferase; Provisional.
Length = 382
Score = 38.7 bits (91), Expect = 0.002
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 21/127 (16%)
Query: 60 FYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES 119
FYN R+ L+ D + V AF K +LD + +G + E+
Sbjct: 33 FYNPRMELNRD---------ISVLVLRAFG----PKLPRESVLDALSASGIRGIRYALET 79
Query: 120 PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDW--FSSVEGLFDVIVSNP----- 172
K DI+ A+E+ K N NG+ D E FDV+ +P
Sbjct: 80 GVEKVTLNDINPDAVELIKKNLELNGLENE-KVFNKDANALLHEERKFDVVDIDPFGSPA 138
Query: 173 PYIESVI 179
P+++S I
Sbjct: 139 PFLDSAI 145
>gnl|CDD|162613 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases.
Length = 223
Score = 38.0 bits (89), Expect = 0.003
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 85 ALAFSLPRIEKRDVV---------RILDLGTGTGAVCLALLKESPFFKGV-GVDISCKAL 134
L+F L R+ +R V ++LD+ GTG + + L K +P V GVD S + L
Sbjct: 18 LLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML 77
Query: 135 EIAK 138
E+AK
Sbjct: 78 EVAK 81
>gnl|CDD|162663 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM.
Length = 219
Score = 37.5 bits (87), Expect = 0.004
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 99 VRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF 158
R+LD G GTG + + L K K VDIS + +++A++ A V+ + +D
Sbjct: 57 KRVLDAGCGTGLLSIELAKRGAIVK--AVDISEQMVQMARNRAQGRDVAGNVEFEVND-L 113
Query: 159 SSVEGLFDVIVS 170
S+ G FD++V
Sbjct: 114 LSLCGEFDIVVC 125
>gnl|CDD|162871 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL.
Length = 124
Score = 34.6 bits (80), Expect = 0.027
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 29/137 (21%)
Query: 85 ALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN 144
AL S R+ DV + D+G G+G++ + + P + ++ + +AL + + NA
Sbjct: 9 ALTLSKLRLRPGDV--LWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNA--- 63
Query: 145 GVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLS 204
RF VSN +E + L + + D R+ + GG GL
Sbjct: 64 ---RRFG-----------------VSNIVIVEGDAPEALEDSLPEPD-RVFI-GGSGGLL 101
Query: 205 HYRTIADGVSRHLNKDG 221
I + + R L G
Sbjct: 102 Q--EILEAIWRRLRPGG 116
>gnl|CDD|162639 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase.
Length = 224
Score = 34.2 bits (79), Expect = 0.033
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 19/99 (19%)
Query: 99 VRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF 158
+R+LD+G G G + L + G+D S + +E+AK +A + + + +
Sbjct: 47 LRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPL-LKIEYRC---- 99
Query: 159 SSVEGL-------FDVIVS-----NPPYIESVIVDCLGL 185
+SVE L FDV+ + P ++ I C L
Sbjct: 100 TSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQL 138
>gnl|CDD|183312 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional.
Length = 702
Score = 34.0 bits (79), Expect = 0.038
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 126 GVDISCKALEIAKSNAVTNGVSERFDTLQSD-------WFSSVEGLFDVIVSNPPYIE 176
G DI + ++ A+ NA GV+E D GL ++SNPPY E
Sbjct: 261 GSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGL---VISNPPYGE 315
Score = 29.4 bits (67), Expect = 1.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 127 VDISCKALEIAKSNAVTNGVSE---RF---DTLQSDWFSSVEGLFDVIVSNPP 173
VD+S LE A+ N NG+S R D L W FD+I +PP
Sbjct: 567 VDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA--WLKEAREQFDLIFIDPP 617
>gnl|CDD|185564 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 33.8 bits (78), Expect = 0.049
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 93 IEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDT 152
I+ D V L++G GTG + LL+ + K + ++I + + K + ++ + +
Sbjct: 34 IKPTDTV--LEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEV 89
Query: 153 LQSDWFSSVEGLFDVIVSNPPY-IESVIV 180
++ D + FDV V+N PY I S +V
Sbjct: 90 IEGDALKTEFPYFDVCVANVPYQISSPLV 118
>gnl|CDD|166927 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 33.6 bits (77), Expect = 0.054
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 85 ALAFSLPRIEKRDVVRILDLGTGTGAVCL-ALLKESPFFKGVGVDISCKALEIAKSNAVT 143
ALA S R+ K D+ ILD+G GTG+V + A L K VD KA+ + + NA
Sbjct: 30 ALALSKLRLRKGDM--ILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87
Query: 144 NGVSER 149
GV
Sbjct: 88 FGVLNN 93
>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional.
Length = 232
Score = 33.4 bits (77), Expect = 0.063
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 91 PRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGV-----GVDISCKALEIAKSNAVTNG 145
P + + +LD+G G G + + L + + G+ +D +A+ A++N G
Sbjct: 54 PALSADRPLTLLDIGCGGGDLAIDLARWAR-RDGLRLEVTAIDPDPRAVAFARANPRRPG 112
Query: 146 VSERFDTLQSDWFSSVEGLFDVIVSN 171
V F SD + FDV+ SN
Sbjct: 113 V--TFRQAVSDELVAEGERFDVVTSN 136
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 33.4 bits (77), Expect = 0.064
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 100 RILDLGTGTGAVCLALLKE-SPFFKGVGVDISCKALEIAKSNAVTNGVSERF--DTLQSD 156
R+LD+G G G L + P + VG+D S L +AK A G + F
Sbjct: 22 RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL 81
Query: 157 WFSSVEGLFDVIVS 170
F G FD + S
Sbjct: 82 PFPD--GSFDAVRS 93
>gnl|CDD|183351 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 33.0 bits (76), Expect = 0.086
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 97 DVVRILDLGTGTGAVC-LALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS 155
+ V LDLG+G G C LA + P K +GVD++ + L A++NA G +
Sbjct: 79 ETV--LDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLG 135
Query: 156 DWFSSVEGL------FDVIVSN 171
+ +E L DVI+SN
Sbjct: 136 E----IEALPVADNSVDVIISN 153
>gnl|CDD|163096 TIGR02987, met_A_Alw26, type II restriction m6 adenine DNA
methyltransferase, Alw26I/Eco31I/Esp3I family. Members
of this family are the m6-adenine DNA methyltransferase
protein, or domain of a fusion protein that also carries
m5 cytosine methyltransferase activity, of type II
restriction systems of the Alw26I/Eco31I/Esp3I family. A
methyltransferase of this family is alway accompanied by
a type II restriction endonuclease from the
Alw26I/Eco31I/Esp3I family (TIGR02986) and by an
adenine-specific modification methyltransferase. Members
of this family are unusual in that regions of similarity
to homologs outside this family are circularly permuted.
Length = 524
Score = 32.8 bits (75), Expect = 0.10
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 95 KRDVVRILDLGTGTGAVCLALLKESP---FFKGVGV-----DISCKALEIAKSN---AVT 143
K +I+D G G + ALLK++ +FK V + DI L+ AK
Sbjct: 29 KSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL 88
Query: 144 NGVSERFDTLQSDWFSSVE---GLFDVIVSNPPY 174
++ S ++E LFD++++NPPY
Sbjct: 89 LEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122
>gnl|CDD|148976 pfam07669, Eco57I, Eco57I restriction endonuclease. Homologues of
the Escherichia coli Eco57I restriction endonuclease are
found in several phylogenetically diverse bacteria.
Length = 106
Score = 32.2 bits (74), Expect = 0.14
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 165 FDVIVSNPPYIES 177
FDV++ NPPY ES
Sbjct: 3 FDVVIGNPPYQES 15
>gnl|CDD|129588 TIGR00497, hsdM, type I restriction system adenine methylase
(hsdM). Function: methylation of specific adenine
residues; required for both restriction and modification
activities. The ECOR124/3 I enzyme recognizes
5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257:
960-969 (1996)).
Length = 501
Score = 32.2 bits (73), Expect = 0.14
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 72 FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLK---ESPFFKG-VGV 127
F P+ +ELL A+ +K V + D+ G+G++ L ++K E G
Sbjct: 198 FTPQDISELLARIAIG------KKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQ 251
Query: 128 DISCKALEIAKSNAVTNGVS-ERF-----DTLQSDWFSSVEGLFDVIVSNPPY 174
+I+ + + N + + + F DTL + + + G F+V+VSNPPY
Sbjct: 252 EINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENG-FEVVVSNPPY 303
>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU. Members
of this protein family are the
S-adenosylmethionine-depenedent C-20 methyltransferase
BchU, part of the pathway of bacteriochlorophyll c
production in photosynthetic green sulfur bacteria. The
position modified by this enzyme represents the
difference between bacteriochlorophylls c and d; strains
lacking this protein can only produced
bacteriochlorophyll d.
Length = 306
Score = 31.2 bits (70), Expect = 0.32
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 78 TELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIA 137
+LL++ + V +++D+G G G + A+LK P +++ A+++
Sbjct: 138 IQLLLE--------EAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP-GAIDLV 188
Query: 138 KSNAVTNGVSERFDTLQSDWF 158
NA GV++R + D +
Sbjct: 189 NENAAEKGVADRMRGIAVDIY 209
>gnl|CDD|179944 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 30.9 bits (71), Expect = 0.33
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 22/96 (22%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKG---VGVDISCKALEIAKSNAVTNGVS--ERFDTLQ 154
R+LD+G G G +L ES G G+D S + +E+A+ +A+ +G+ R T +
Sbjct: 51 RVLDVGCGGG-----ILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAE 105
Query: 155 SDWFSSVEGLFDVI--------VSNPPYIESVIVDC 182
+ + G FDV+ V +P S + C
Sbjct: 106 -ELAAEHPGQFDVVTCMEMLEHVPDP---ASFVRAC 137
>gnl|CDD|185082 PRK15128, PRK15128, 23S rRNA m(5)C1962 methyltransferase;
Provisional.
Length = 396
Score = 30.2 bits (68), Expect = 0.59
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 125 VGVDISCKALEIAKSNAVTNGVS-ERFDTLQSDWFSSVEGL------FDVIVSNPP 173
V VD S +AL+IA+ N N + + + ++ D F + FDVIV +PP
Sbjct: 247 VSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPP 302
>gnl|CDD|180308 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 29.4 bits (66), Expect = 0.87
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 92 RIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFD 151
+IE + +I DL G+ L++L + FK +DI +I K+ + + +++ +
Sbjct: 197 KIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIE----DINKTFGLVD-NNKKIN 251
Query: 152 TLQSDWFSSVEGLFDVI 168
++ + +E L ++I
Sbjct: 252 LIELIQKNDIEELRNLI 268
>gnl|CDD|114722 pfam06016, Reovirus_L2, Reovirus core-spike protein lambda-2 (L2).
This family consists of several Reovirus core-spike
protein lambda-2 (L2) sequences. The reovirus L2 genome
segment encodes the core spike protein lambda-2, which
mediates enzymatic reactions in 5' capping of the viral
plus-strand transcripts.
Length = 1289
Score = 29.0 bits (65), Expect = 1.1
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 64 RLTLSSD----TFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALL 116
R T D F P T+L + F+L + D+ LDLGTG A L+L+
Sbjct: 785 RFTAPPDPELFGFRSNPVTQLCLAFFYDFTLTSTDFTDLKHWLDLGTGPEARILSLI 841
>gnl|CDD|183291 PRK11727, PRK11727, 23S rRNA mA1618 methyltransferase; Provisional.
Length = 321
Score = 29.1 bits (66), Expect = 1.1
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 22/91 (24%)
Query: 99 VRILDLGTGTGAVCL-ALLKESPF---FKGVGVDISCKALE----IAKSNAVTNG-VSER 149
VR+LD+ G GA C+ L+ + F VG DI +AL I +N NG + R
Sbjct: 116 VRVLDI--GVGANCIYPLIGVHEYGWRF--VGSDIDPQALASAQAIISANPGLNGAIRLR 171
Query: 150 FDTLQSDWFSSVEGL------FDVIVSNPPY 174
LQ D + +G+ FD + NPP+
Sbjct: 172 ---LQKDSKAIFKGIIHKNERFDATLCNPPF 199
>gnl|CDD|173175 PRK14712, PRK14712, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1623
Score = 29.1 bits (64), Expect = 1.2
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 56 GWRDFYN--VRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDV 98
GW D N V+ + D FEP+P+ E++ ++ FS R E RDV
Sbjct: 1319 GWTDAINNAVQKGTAHDVFEPKPDREVM-NAERLFSTAR-ELRDV 1361
>gnl|CDD|177639 PHA03411, PHA03411, putative methyltransferase; Provisional.
Length = 279
Score = 28.9 bits (64), Expect = 1.4
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK-----SNAVTNGVSERFDTLQ 154
++LDL G G + +L K V V+++ + I K + +T+ V E
Sbjct: 67 KVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFE------ 120
Query: 155 SDWFSSVEGLFDVIVSNPPY 174
F S E FDV++SNPP+
Sbjct: 121 ---FESNEK-FDVVISNPPF 136
>gnl|CDD|129244 TIGR00138, gidB, 16S rRNA methyltransferase GidB. GidB
(glucose-inhibited division protein B) appears to be
present and in a single copy in nearly all complete
eubacterial genomes. It is missing only from some
obligate intracellular species of various lineages
(Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera,
etc.). GidB shows a methytransferase fold in its the
crystal structure, and acts as a 7-methylguanosine
(m(7)G) methyltransferase, apparently specific to 16S
rRNA.
Length = 181
Score = 28.8 bits (65), Expect = 1.5
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 20/120 (16%)
Query: 61 YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTG--AVCLALL-- 116
+N R L+S ++DS D +++D+G+G G + LA+
Sbjct: 11 WNKRFNLTSLKTPEEIWERHILDSLKLLEYL-----DGKKVIDIGSGAGFPGIPLAIARP 65
Query: 117 -----------KESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLF 165
K+ F + V ++ +EI A E+FD + S +S+ L
Sbjct: 66 ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASLNVLL 125
>gnl|CDD|161690 TIGR00070, hisG, ATP phosphoribosyltransferase. Members of this
family from B. subtilis, Aquifex aeolicus, and
Synechocystis PCC6803 (and related taxa) lack the
C-terminal third of the sequence. The sole homolog from
Archaeoglobus fulgidus lacks the N-terminal 50 residues
(as reported) and is otherwise atypical of the rest of
the family. This model excludes the C-terminal
extension.
Length = 182
Score = 28.7 bits (65), Expect = 1.7
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGV---GVDISCKALEIAKSNAVTNGVSERF 150
DV +LDLG G + LA+ +ES G I+ K +A+ G+
Sbjct: 74 SGADVYELLDLGFGKCRLVLAVPQESDISSVEDLKGKRIATKYPNLARRYFEKKGIDVEI 133
Query: 151 DTLQSDWFSSVE-----GLFDVIV 169
L SVE GL D IV
Sbjct: 134 IKLN----GSVELAPLLGLADAIV 153
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 28.4 bits (64), Expect = 2.0
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 87 AFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSN 140
A +L ++E ++D+G GTG+V + + P + ++ + AL + K N
Sbjct: 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKEN 74
>gnl|CDD|178307 PLN02705, PLN02705, beta-amylase.
Length = 681
Score = 28.4 bits (63), Expect = 2.0
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 228 GYNQKVDVVRIFESRKLFLVNAFKDYGGND 257
GY + +++R F+ KL +V AF +YGGN
Sbjct: 306 GYRELFNIIREFK-LKLQVVMAFHEYGGNA 334
>gnl|CDD|149275 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain.
Length = 245
Score = 28.1 bits (63), Expect = 2.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 226 EIGYNQKVDVVRIFESRKLFLVNA 249
E Q VD V +E RKL ++N
Sbjct: 58 EKVGVQFVDDVDPYEERKLRILNG 81
>gnl|CDD|162023 TIGR00755, ksgA, dimethyladenosine transferase. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase.
Length = 253
Score = 28.0 bits (63), Expect = 2.4
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 93 IEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDT 152
+ + DVV L++G G GA+ LLK + + +D EI + + ER +
Sbjct: 27 VLEGDVV--LEIGPGLGALTEPLLKRAKKVTAIEIDPRL--AEILRKLL---SLYERLEV 79
Query: 153 LQSD----WFSSVEGLFDVIVSNPPY-IESVIVDCLGLEVRDF 190
++ D +VSN PY I S ++ L LE F
Sbjct: 80 IEGDALKVDLPD-FPKQLKVVSNLPYNISSPLIFKL-LEKPKF 120
>gnl|CDD|129061 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS)
enzymes.
Length = 224
Score = 27.8 bits (62), Expect = 2.9
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSER 149
R+LD G G G+ + L + P + G IS + E+ + G+ R
Sbjct: 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGR 51
>gnl|CDD|149616 pfam08622, Svf1, Svf1-like. Family of proteins that are involved
in survival during oxidative stress.
Length = 325
Score = 27.2 bits (61), Expect = 3.9
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 200 IDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVV 236
D LS Y AD VS LN+DG Y K V
Sbjct: 64 FDKLSFY---ADNVSVELNEDG-----TEYTIKSSVN 92
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 27.2 bits (60), Expect = 4.6
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 90 LPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK-SNAVTNGVS- 147
L IE + ++LD+G+G G C + E GVDI K + IAK N+ N +
Sbjct: 45 LSDIELNENSKVLDIGSGLGGGCK-YINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEF 103
Query: 148 ERFDTLQSDWFSSVEGLFDVIVS 170
E D L+ D+ E FD+I S
Sbjct: 104 EANDILKKDF---PENTFDMIYS 123
>gnl|CDD|150895 pfam10294, Methyltransf_16, Putative methyltransferase.
Length = 171
Score = 27.3 bits (61), Expect = 4.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 99 VRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSN-AVTNGVSER--FDTLQS 155
+L+LG+G G V +A+ P D+ +A+E+ K N + +S + L
Sbjct: 46 KNVLELGSGCGLVGIAVALLLPGASVTITDLE-EAIELMKKNIELNKALSSKVTAKVL-- 102
Query: 156 DW 157
DW
Sbjct: 103 DW 104
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 27.1 bits (60), Expect = 4.7
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 100 RILDLGTGTGAVCLALLKE-SPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSD 156
I+D+G G G V L +++E + + G+DIS ++ K G S ++ ++ D
Sbjct: 421 TIVDVGAG-GGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRS--WNVIKGD 475
>gnl|CDD|166495 PLN02854, PLN02854, 3-ketoacyl-CoA synthase.
Length = 521
Score = 26.8 bits (59), Expect = 5.1
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 158 FSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHL 217
F +++ LF P I +IV+C F+P SL I ++HY+ D S +L
Sbjct: 193 FGALDSLFSKTGVKPRDIGILIVNC-----SLFNPTPSLSAMI--VNHYKLRTDIKSYNL 245
Query: 218 NKDGLCSVEIGYNQKVDVVRIFESRKLFLVNA----FKDYGGNDRVLLFC 263
G + I + D+++ + +V+ Y GNDR +L C
Sbjct: 246 GGMGCSAGLISIDLANDLLKANPNSYAVVVSTENITLNWYFGNDRSMLLC 295
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 26.7 bits (59), Expect = 5.8
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
Query: 93 IEKRDVVRILDLGTGTG---AVC 112
IE R ++IL++GTG+G AVC
Sbjct: 68 IEPRPGMKILEVGTGSGYQAAVC 90
>gnl|CDD|162689 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized.
Length = 194
Score = 26.6 bits (59), Expect = 7.0
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDIS 130
R+LDLG G G + LALL++ +G G++I
Sbjct: 16 RVLDLGCGDGEL-LALLRDEKQVRGYGIEID 45
>gnl|CDD|183457 PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate
synthase family transferase; Provisional.
Length = 524
Score = 26.2 bits (59), Expect = 9.6
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 99 VRILDLGTGTGAV 111
VRILD G GT AV
Sbjct: 465 VRILDGGKGTAAV 477
>gnl|CDD|182918 PRK11036, PRK11036, putative S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 255
Score = 26.1 bits (58), Expect = 9.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGV---DISCKALEIAKSNAVTNGVSERFDTLQS 155
R+LD G G G + L + G V D+S + ++ AK A GVS+ +
Sbjct: 47 RVLDAGGGEGQTAIKLAE-----LGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC 100
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.141 0.418
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,410,503
Number of extensions: 286434
Number of successful extensions: 587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 72
Length of query: 264
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,006,537
Effective search space: 689124364
Effective search space used: 689124364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.5 bits)