BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase
(methyltransferase) protein [Candidatus Liberibacter asiaticus str.
psy62]
         (264 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 264

 Score =  532 bits (1370), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MQALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDF 60
           MQALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDF
Sbjct: 1   MQALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDF 60

Query: 61  YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP 120
           YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP
Sbjct: 61  YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP 120

Query: 121 FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIV 180
           FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIV
Sbjct: 121 FFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIV 180

Query: 181 DCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFE 240
           DCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFE
Sbjct: 181 DCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFE 240

Query: 241 SRKLFLVNAFKDYGGNDRVLLFCR 264
           SRKLFLVNAFKDYGGNDRVLLFCR
Sbjct: 241 SRKLFLVNAFKDYGGNDRVLLFCR 264


>gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score = 26.6 bits (57), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 202 GLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGN 256
           G S  R     +S+  + DGL ++    N++ D +RIFE  K      FK+Y  +
Sbjct: 44  GYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEK----QTFKEYNSD 94


>gi|254781210|ref|YP_003065623.1| hypothetical protein CLIBASIA_05585 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 343

 Score = 25.8 bits (55), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 191 DPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK 232
           DP  +LD GI+ L  Y ++A         + +    +G N+K
Sbjct: 89  DPFATLDSGINPLLPYASLATAAMHRKQDEAILKGMLGVNKK 130


>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 576

 Score = 25.4 bits (54), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKV 233
           Y+E   V  +   + D+   + L  GI+GL+H   I+    ++++   + SV     Q+V
Sbjct: 280 YVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQIS-WTKKNIHPSKILSV----GQQV 334

Query: 234 DVV---------RIFESRKLFLVNAFKDY 253
           +VV         RI    K  L+N ++++
Sbjct: 335 EVVILEVNPARKRISLGLKQALINPWEEF 363


>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 435

 Score = 22.7 bits (47), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 173 PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK 232
           PY+E  + D +GL+    DP  S     D  + Y ++   ++  + +    + EI + Q+
Sbjct: 195 PYVEQHVADAMGLKT---DPISSQVIARDRHAMYFSVLGVIASSIER---VATEIRHLQR 248

Query: 233 VDVVRIFE 240
            +++ + E
Sbjct: 249 TEILEVEE 256


>gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 254

 Score = 22.7 bits (47), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 125 VGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVS 170
            G+D S K + IAK++A    ++  +    ++  +  +  FD+I++
Sbjct: 92  TGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILN 137


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.141    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,326
Number of Sequences: 1233
Number of extensions: 7612
Number of successful extensions: 15
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 264
length of database: 328,796
effective HSP length: 72
effective length of query: 192
effective length of database: 240,020
effective search space: 46083840
effective search space used: 46083840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 37 (18.9 bits)