RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780876|ref|YP_003065289.1| hypothetical protein
CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)



>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich,
           helix bundle, structural genomics, PSI-2, protein
           structure initiative; HET: PGE; 2.12A {Streptococcus
           mutans UA159} (A:1-132)
          Length = 132

 Score = 26.8 bits (59), Expect = 2.2
 Identities = 4/35 (11%), Positives = 7/35 (20%)

Query: 49  HIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRI 83
             A+            G   +  +    A    R 
Sbjct: 67  EHADYLEDEVERVKKVGYRDLISHLYFSACFSIRA 101


>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit;
           electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A
           {Pseudomonas putida} (A:242-472)
          Length = 231

 Score = 25.8 bits (55), Expect = 4.3
 Identities = 13/134 (9%), Positives = 34/134 (25%), Gaps = 2/134 (1%)

Query: 51  AERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKE 110
                      M     + A N           V +    + +  ++  +  ++ +E+  
Sbjct: 59  PGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAG 118

Query: 111 RAQ--NALSEFEASPCPLIEEGKEPIFENSIQPKVEDVAFKTPDISREKDVSYKKVRRRR 168
             Q     ++  +    L E G               V+       +++    K+V  + 
Sbjct: 119 DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLHKY 178

Query: 169 PLRPRVFPNAKSGN 182
            L           +
Sbjct: 179 GLDYVAEFIVAPRD 192


>1u9l_A Transcription elongation protein NUSA; escherichia coli
           NUSA, phage lambda protein N, regulation of RNA binding,
           transcription antitermination, X-RAY crystallography;
           1.90A {Escherichia coli} (A:)
          Length = 70

 Score = 25.3 bits (56), Expect = 5.6
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 77  AEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFEA 121
            E ++ +  +A   ++E L+ +  D+  V+  +ERA+NAL+    
Sbjct: 24  EEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ 68


>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET:
           ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A*
           3ikj_A 1vdz_A (A:1-101,A:190-440)
          Length = 352

 Score = 24.7 bits (53), Expect = 9.2
 Identities = 4/19 (21%), Positives = 5/19 (26%)

Query: 124 CPLIEEGKEPIFENSIQPK 142
            P  + G   I       K
Sbjct: 134 FPQAKGGTAAIPGPFGSGK 152


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.312    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,472,551
Number of extensions: 62747
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 14
Length of query: 210
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 125
Effective length of database: 2,082,624
Effective search space: 260328000
Effective search space used: 260328000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (23.9 bits)