RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780876|ref|YP_003065289.1| hypothetical protein
CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62]
(210 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.4 bits (83), Expect = 0.005
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 92 QEKLQR-DEQDDLLVKEQKERAQNALSEFEASPCPLIEEGKEPIFENSIQPKVEDVAF-K 149
+++LQ D ++ +E +E+A+ L E+ + E + +N I ++ D AF +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWN-------QRQSEQVEKNKINNRIADKAFYQ 147
Query: 150 TPD 152
PD
Sbjct: 148 QPD 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 30.7 bits (69), Expect = 0.26
Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 50/121 (41%)
Query: 17 GGNGSFNR--KNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARDAMSAGDY------V 68
GG G+ + + L L Y + Y V V + AE S L R + A +
Sbjct: 161 GGQGNTDDYFEELRDL---YQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 69 VAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFEASP--CPL 126
+ L++ ++D LL + P CPL
Sbjct: 216 LE--WLENPS-----------------NTPDKDYLL----------------SIPISCPL 240
Query: 127 I 127
I
Sbjct: 241 I 241
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage
lambda protein N, regulation of RNA binding,
transcription antitermination, X-RAY crystallography;
1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Length = 70
Score = 29.2 bits (66), Expect = 0.79
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 66 DYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSE 118
D A + E ++ + +A ++E L+ + D+ V+ +ERA+NAL+
Sbjct: 15 DEDFA--TVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 65
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 27.9 bits (61), Expect = 1.8
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 49 HIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRI 83
+A Y A ++ G + A L A +
Sbjct: 61 SLANEYEQEAERKVALGHDLSAGELLMSAALCAQY 95
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics, PSI-2, protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans UA159}
Length = 405
Score = 27.5 bits (60), Expect = 2.1
Identities = 4/35 (11%), Positives = 7/35 (20%)
Query: 49 HIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRI 83
A+ G + + A R
Sbjct: 67 EHADYLEDEVERVKKVGYRDLISHLYFSACFSIRA 101
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl
radical, hyperthermophilic, unknown function; HET: PGE;
2.90A {Archaeoglobus fulgidus}
Length = 776
Score = 27.5 bits (61), Expect = 2.4
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 47 AQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQ 96
+ RYS LA + + D E L+ AE ++ + E +Q
Sbjct: 206 VINYGLRYSKLAEELAESEDGERREELLKIAEICRKVPAEKPETFWEAVQ 255
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 26.6 bits (58), Expect = 4.4
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 76 HAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFEAS 122
+ R +A ++ E + L +QK R + F S
Sbjct: 260 LKDQVLRCSKIAGVKVAE--ITELILKALENDQKVRKEGGKFGFAES 304
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 4.6
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 110 ERAQNALSEFEASPCPLIEEGKEPIFENSIQPKVE 144
E+ Q AL + +AS L + P +I+ +E
Sbjct: 18 EK-Q-ALKKLQAS-LKLYADDSAPAL--AIKATME 47
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21
Length = 287
Score = 25.7 bits (56), Expect = 7.2
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 30 LVRNYDSNGYDVKVRGTA-------QHIAERYSVLARDAMSAGDYVVAENH 73
+ GY+ K+ A ERY + D + H
Sbjct: 128 TATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAH 178
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to
L-fuculose conversion; HET: FOC; 2.50A {Escherichia coli
K12} SCOP: b.43.2.1 c.85.1.1
Length = 591
Score = 25.7 bits (56), Expect = 8.4
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 35 DSNGYDVKVRGTAQHIAE-----RYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQA 89
D N + R Q A ++ RD M + ++ + YN I + Q
Sbjct: 243 DENNKQYQ-RNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQG 301
Query: 90 QIQ 92
Q
Sbjct: 302 QRH 304
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.312 0.128 0.356
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,665,732
Number of extensions: 73887
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 20
Length of query: 210
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 122
Effective length of database: 3,559,758
Effective search space: 434290476
Effective search space used: 434290476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.3 bits)