RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780876|ref|YP_003065289.1| hypothetical protein
CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)



>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA
           {Escherichia coli [TaxId: 562]}
          Length = 68

 Score = 28.8 bits (65), Expect = 0.34
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 66  DYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSE 118
           D   A   +   E ++ +  +A   ++E L+ +  D+  V+  +ERA+NAL+ 
Sbjct: 15  DEDFA--TVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 65


>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine
          hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]}
          Length = 360

 Score = 28.4 bits (62), Expect = 0.52
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 49 HIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRI 83
           +A  Y   A   ++ G  + A   L  A    + 
Sbjct: 40 SLANEYEQEAERKVALGHDLSAGELLMSAALCAQY 74


>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain
           {Penicillium minioluteum [TaxId: 28574]}
          Length = 373

 Score = 27.3 bits (60), Expect = 1.1
 Identities = 5/64 (7%), Positives = 13/64 (20%)

Query: 9   RSRGRGSNGGNGSFNRKNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARDAMSAGDYV 68
                      G  +R      +   +          T    A   +     +  + D  
Sbjct: 212 WKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSR 271

Query: 69  VAEN 72
            + +
Sbjct: 272 KSIS 275


>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
           {Escherichia coli [TaxId: 562]}
          Length = 366

 Score = 26.8 bits (57), Expect = 1.4
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 49  HIAERYSVLARDAMSAGDYVVAENHLQHA------EHYNRIVSMAQAQIQEKLQRDEQDD 102
            +     +L +    AG    A+  L  A        +     +    + ++L++  Q +
Sbjct: 289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLN 348

Query: 103 LLVKEQKERAQNALSE 118
            L + ++ RAQ  L E
Sbjct: 349 TLPELEQHRAQRILRE 364


>d2ha9a1 c.7.1.5 (A:1-440) Uncharacterized protein SP0239
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 440

 Score = 24.7 bits (54), Expect = 6.8
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 157 KDVSYKKVRRRRPLRPRVFPNAKSG 181
            D +   V   +    R+ P  K G
Sbjct: 380 ADEAAIGVINMKTTAVRIIPKGKEG 404


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 713,160
Number of extensions: 31627
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 10
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.5 bits)