HHsearch alignment for GI: 254780877 and conserved domain: CHL00181
>CHL00181 cbbX CbbX; Provisional.
Probab=99.38 E-value=1.4e-10 Score=104.94 Aligned_cols=230 Identities=21% Similarity=0.352 Sum_probs=145.6
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHH---H----HHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 0000012355477674594899999999---9----98741012365665128987267861688999999987237765
Q gi|254780877|r 555 DREKFLRIETEISKSVIGQSAAVESVSN---A----LRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDEN 627 (853)
Q Consensus 555 E~ekLl~l~~~l~~~v~gq~~ai~~v~~---~----~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~ 627 (853)
T Consensus 10 ~~~~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s-~h~vF~GnPGTGKTTVARl~a~il~~l-- 86 (287)
T CHL00181 10 NKTQIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPG-LHMSFTGSPGTGKTTVALKMADILYRL-- 86 (287)
T ss_pred HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHC--
T ss_conf 45349999999988646969999999999999999999998799988876-538887899867999999999999986--
Q ss_pred CCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCC-HHHHCCCCCEEEEHHHHH---------CCHHHHHHHHHHHHCC
Q ss_conf 300224477403453201304771120356677421-132215641022021441---------4989999999984045
Q gi|254780877|r 628 SMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALT-EAVRRHPYQVVLFDEIEK---------AHSDVHNILLQVLDDG 697 (853)
Q Consensus 628 ~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lt-e~vr~~P~sVil~DEiEK---------ah~~v~~~llqild~G 697 (853)
T Consensus 87 G~L~--~g~vve-~~r~dLvg---~yvG~Ta--~kt~~~i~~a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~ 158 (287)
T CHL00181 87 GYIK--KGHLIT-VTRDDLVG---QYIGHTA--PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQ 158 (287)
T ss_pred CCCC--CCEEEE-ECHHHHCC---CCCCCCH--HHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9955--895899-53588416---3535216--99999999645987998244653578899983799999999998707
Q ss_pred EEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 78879997783033155954851268764032679999999998628857726668158628899899999999999999
Q gi|254780877|r 698 RLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRV 777 (853)
Q Consensus 698 ~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l 777 (853)
T Consensus 159 ~-----~------~lvvI~AG---------Y~~e-----M~~fl~-~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~-- 210 (287)
T CHL00181 159 R-----D------DLVVIFAG---------YKDR-----MDKFYE-SNPGLSSRVANHVDFPDYTPEELLQIAKMMLE-- 210 (287)
T ss_pred C-----C------CEEEEEEC---------CHHH-----HHHHHH-HCCCHHHHCCCEEECCCCCHHHHHHHHHHHHH--
T ss_conf 9-----9------88999846---------7899-----999998-59047876887237798599999999999999--
Q ss_pred HHHHHHCCCEEEECHHH----HHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998579899998899----99999708982206-2157999998733499999970
Q gi|254780877|r 778 LSLIKERNISMDFDDQV----IDWLSCRGYDPSYG-ARPLKRVIQRYIQNPLAERVLS 830 (853)
Q Consensus 778 ~~~l~~~~i~l~~~~~~----~~~l~~~~~~~~~G-aR~l~r~i~~~i~~~la~~il~ 830 (853)
T Consensus 211 -----~~~~~--l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~~~qa~Rl~~~ 261 (287)
T CHL00181 211 -----EQQYQ--LTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRARMRQANRIFAS 261 (287)
T ss_pred -----HCCCC--CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -----86982--5879999999999985089998748999999999999999886567