HHsearch alignment for GI: 254780877 and conserved domain: COG0470

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.05  E-value=0.00019  Score=55.12  Aligned_cols=124  Identities=28%  Similarity=0.375  Sum_probs=79.8

Q ss_pred             HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC----------CCCHHHHC
Q ss_conf             74594899999999998741012365665128987267861688999999987237765300----------22447740
Q gi|254780877|r  569 SVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMI----------RIDMSEYM  638 (853)
Q Consensus       569 ~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~li----------r~dMsey~  638 (853)
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~------~~~h-alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESG------RLPH-ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP   74 (325)
T ss_pred             CCCCCHHHHHHHHHHHHHCC------CCCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf             64332358999999998658------8876-1003799999789999999999658664334552002244432025688


Q ss_pred             CCCCCCHHHCCCCHHCCCCCCC--CCCHHHH-----------CCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCC
Q ss_conf             3453201304771120356677--4211322-----------15641022021441498999999998404578879997
Q gi|254780877|r  639 EKHSVSRLIGSPPGYVGYEEGG--ALTEAVR-----------RHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGR  705 (853)
Q Consensus       639 e~~~vs~LiGappGYvG~~~gg--~Lte~vr-----------~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~  705 (853)
T Consensus        75 ---d~lel~~s-------~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe---------  135 (325)
T COG0470          75 ---DFLELNPS-------DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE---------  135 (325)
T ss_pred             ---CEEEECCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC---------
T ss_conf             ---65997732-------13333006999999998604465667726999732032698888767543324---------


Q ss_pred             EEECCCCEEEECCCH
Q ss_conf             783033155954851
Q gi|254780877|r  706 TVDFRNTLIIMTSNL  720 (853)
Q Consensus       706 ~v~f~n~iii~TsN~  720 (853)
T Consensus       136 --p~~~~~~il~~n~  148 (325)
T COG0470         136 --PPKNTRFILITND  148 (325)
T ss_pred             --CCCCEEEEEEECC
T ss_conf             --8887169997498