HHsearch alignment for GI: 254780877 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.05 E-value=0.00019 Score=55.12 Aligned_cols=124 Identities=28% Similarity=0.375 Sum_probs=79.8
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC----------CCCHHHHC
Q ss_conf 74594899999999998741012365665128987267861688999999987237765300----------22447740
Q gi|254780877|r 569 SVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMI----------RIDMSEYM 638 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~li----------r~dMsey~ 638 (853)
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~h-alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLPH-ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CCCCCHHHHHHHHHHHHHCC------CCCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 64332358999999998658------8876-1003799999789999999999658664334552002244432025688
Q ss_pred CCCCCCHHHCCCCHHCCCCCCC--CCCHHHH-----------CCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCC
Q ss_conf 3453201304771120356677--4211322-----------15641022021441498999999998404578879997
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEGG--ALTEAVR-----------RHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGR 705 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~gg--~Lte~vr-----------~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~ 705 (853)
T Consensus 75 ---d~lel~~s-------~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe--------- 135 (325)
T COG0470 75 ---DFLELNPS-------DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE--------- 135 (325)
T ss_pred ---CEEEECCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC---------
T ss_conf ---65997732-------13333006999999998604465667726999732032698888767543324---------
Q ss_pred EEECCCCEEEECCCH
Q ss_conf 783033155954851
Q gi|254780877|r 706 TVDFRNTLIIMTSNL 720 (853)
Q Consensus 706 ~v~f~n~iii~TsN~ 720 (853)
T Consensus 136 --p~~~~~~il~~n~ 148 (325)
T COG0470 136 --PPKNTRFILITND 148 (325)
T ss_pred --CCCCEEEEEEECC
T ss_conf --8887169997498