HHsearch alignment for GI: 254780877 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=100.00  E-value=0  Score=1922.12  Aligned_cols=773  Identities=60%  Similarity=0.963  Sum_probs=728.5

Q ss_pred             HCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             71799999999999999982899633899999986188766899999739998999999999997459547897777069
Q gi|254780877|r    5 KYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGGAQVYLS   84 (853)
Q Consensus         5 kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~~~~~~S   84 (853)
T Consensus         1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~s   75 (786)
T COG0542           1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDLDKLRQELEEFIDKLPKVLGS---PYLS   75 (786)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHH--HHHHHCCCCHHHHHHHHHHHHHCCCCCCCC---CCCC
T ss_conf             94889999999999999985798665999999997486317--999874999999999999998426777777---7878


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             899999999999999719870259998766872775178-8999759998999999998737788787775467610788
Q gi|254780877|r   85 QPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDALKK  163 (853)
Q Consensus        85 ~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~L~k  163 (853)
T Consensus        76 ~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  155 (786)
T COG0542          76 PRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGNEVDSKNAEEDQDALEK  155 (786)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             77999999999998751576555899999986176227899998665777779999999734666677666532446998


Q ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf             64435699872985333335789999999633677786689528874077799999998734899844457437887313
Q gi|254780877|r  164 YCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG  243 (853)
Q Consensus       164 y~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~  243 (853)
T Consensus       156 ~~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g  235 (786)
T COG0542         156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG  235 (786)
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHH
T ss_conf             74114799865898877374799999999983568899847668988899999899999746999978758879971487


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCC-CCCHHHHHHHHHCCCCEEEEEEECHHHHHHH
Q ss_conf             542174542024545899999986079976999636277302666554-3358888765312466048997448999997
Q gi|254780877|r  244 ALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDG-AMDASNLLKPSLARGELHCIGATTLDEYRKY  322 (853)
Q Consensus       244 ~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g-~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~  322 (853)
T Consensus       236 ~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~  314 (786)
T COG0542         236 SLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY  314 (786)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf             674646535738999999999985179-8499982355405777666665125664677874587379973558999887


Q ss_pred             HHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             30011132023111115777678999999978986541496101589999986333202457674778999999999875
Q gi|254780877|r  323 IEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVR  402 (853)
Q Consensus       323 iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~  402 (853)
T Consensus       315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~A~~~  394 (786)
T COG0542         315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVR  394 (786)
T ss_pred             HHHCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             33066778467510279989899999998778888770696433799999999998645567899467778899999997


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             41022214578879999974456999850222356656899987689999999999998886566765599999998874
Q gi|254780877|r  403 MQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESM  482 (853)
Q Consensus       403 i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~  482 (853)
T Consensus       395 l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~----------------------------~~~~~~~~~~~~-----  440 (786)
T COG0542         395 LEID-KPEELDELERELAQLEIEKEALEREQDEKE----------------------------KKLIDEIIKLKE-----  440 (786)
T ss_pred             HCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH-----
T ss_conf             2034-884056899999998888988744036888----------------------------888778998754-----


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHH
Q ss_conf             88888864211156765432011068999999999751126772000168667899987661786677510000000123
Q gi|254780877|r  483 RNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRI  562 (853)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl~l  562 (853)
T Consensus       441 ---------------------~~~~~~~~~~~~-~-------------v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~l  485 (786)
T COG0542         441 ---------------------GRIPELEKELEA-E-------------VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNL  485 (786)
T ss_pred             ---------------------HHHHHHHHHHHH-C-------------CCHHHHHHHHHHHHCCCHHHHCHHHHHHHHHH
T ss_conf             ---------------------100567888762-2-------------67989999999987898364133258899867


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC
Q ss_conf             55477674594899999999998741012365665128987267861688999999987237765300224477403453
Q gi|254780877|r  563 ETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS  642 (853)
Q Consensus       563 ~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~  642 (853)
T Consensus       486 e~~L~~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs  565 (786)
T COG0542         486 ERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHS  565 (786)
T ss_pred             HHHHHCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHH
T ss_conf             99973650173999999999999985699999987357886678865699999999999659974445545687777877


Q ss_pred             CCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHH
Q ss_conf             20130477112035667742113221564102202144149899999999840457887999778303315595485126
Q gi|254780877|r  643 VSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGA  722 (853)
Q Consensus       643 vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~  722 (853)
T Consensus       566 VSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs  645 (786)
T COG0542         566 VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGS  645 (786)
T ss_pred             HHHHHCCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCEECCCCCEEECCEEEEEEECCCCH
T ss_conf             99872799987200655400376606998688841264408899999999846780554899888430028998450265


Q ss_pred             HHHHCC--------HHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf             876403--------267999999999862885772666815862889989999999999999999998579899998899
Q gi|254780877|r  723 EYLIED--------GDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQV  794 (853)
Q Consensus       723 ~~~~~~--------~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~  794 (853)
T Consensus       646 ~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a  725 (786)
T COG0542         646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEA  725 (786)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf             98975313432100467889999999853899898512617850679989999999999999999998689559988899


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
Q ss_conf             9999970898220621579999987334999999708688978899999899489897
Q gi|254780877|r  795 IDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDDDNLNFRV  852 (853)
Q Consensus       795 ~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~~~~~~~~  852 (853)
T Consensus       726 ~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~~~~~~~~~v~v~~~~~~~~~~~  783 (786)
T COG0542         726 KDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVKVDVDDEKIKFVS  783 (786)
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEE
T ss_conf             9999996468776736799999999989999999846657996799995176378863