HHsearch alignment for GI: 254780877 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=1922.12 Aligned_cols=773 Identities=60% Similarity=0.963 Sum_probs=728.5
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 71799999999999999982899633899999986188766899999739998999999999997459547897777069
Q gi|254780877|r 5 KYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGGAQVYLS 84 (853)
Q Consensus 5 kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~~~~~~S 84 (853)
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~s 75 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDLDKLRQELEEFIDKLPKVLGS---PYLS 75 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHH--HHHHHCCCCHHHHHHHHHHHHHCCCCCCCC---CCCC
T ss_conf 94889999999999999985798665999999997486317--999874999999999999998426777777---7878
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 899999999999999719870259998766872775178-8999759998999999998737788787775467610788
Q gi|254780877|r 85 QPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDALKK 163 (853)
Q Consensus 85 ~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~L~k 163 (853)
T Consensus 76 ~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 155 (786)
T COG0542 76 PRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGNEVDSKNAEEDQDALEK 155 (786)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 77999999999998751576555899999986176227899998665777779999999734666677666532446998
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf 64435699872985333335789999999633677786689528874077799999998734899844457437887313
Q gi|254780877|r 164 YCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243 (853)
Q Consensus 164 y~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~ 243 (853)
T Consensus 156 ~~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHH
T ss_conf 74114799865898877374799999999983568899847668988899999899999746999978758879971487
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCC-CCCHHHHHHHHHCCCCEEEEEEECHHHHHHH
Q ss_conf 542174542024545899999986079976999636277302666554-3358888765312466048997448999997
Q gi|254780877|r 244 ALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDG-AMDASNLLKPSLARGELHCIGATTLDEYRKY 322 (853)
Q Consensus 244 ~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g-~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~ 322 (853)
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 674646535738999999999985179-8499982355405777666665125664677874587379973558999887
Q ss_pred HHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 30011132023111115777678999999978986541496101589999986333202457674778999999999875
Q gi|254780877|r 323 IEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVR 402 (853)
Q Consensus 323 iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~ 402 (853)
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~A~~~ 394 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVR 394 (786)
T ss_pred HHHCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 33066778467510279989899999998778888770696433799999999998645567899467778899999997
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41022214578879999974456999850222356656899987689999999999998886566765599999998874
Q gi|254780877|r 403 MQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESM 482 (853)
Q Consensus 403 i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~ 482 (853)
T Consensus 395 l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~----------------------------~~~~~~~~~~~~----- 440 (786)
T COG0542 395 LEID-KPEELDELERELAQLEIEKEALEREQDEKE----------------------------KKLIDEIIKLKE----- 440 (786)
T ss_pred HCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH-----
T ss_conf 2034-884056899999998888988744036888----------------------------888778998754-----
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHH
Q ss_conf 88888864211156765432011068999999999751126772000168667899987661786677510000000123
Q gi|254780877|r 483 RNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRI 562 (853)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl~l 562 (853)
T Consensus 441 ---------------------~~~~~~~~~~~~-~-------------v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~l 485 (786)
T COG0542 441 ---------------------GRIPELEKELEA-E-------------VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNL 485 (786)
T ss_pred ---------------------HHHHHHHHHHHH-C-------------CCHHHHHHHHHHHHCCCHHHHCHHHHHHHHHH
T ss_conf ---------------------100567888762-2-------------67989999999987898364133258899867
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC
Q ss_conf 55477674594899999999998741012365665128987267861688999999987237765300224477403453
Q gi|254780877|r 563 ETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS 642 (853)
Q Consensus 563 ~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~ 642 (853)
T Consensus 486 e~~L~~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs 565 (786)
T COG0542 486 ERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHS 565 (786)
T ss_pred HHHHHCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHH
T ss_conf 99973650173999999999999985699999987357886678865699999999999659974445545687777877
Q ss_pred CCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHH
Q ss_conf 20130477112035667742113221564102202144149899999999840457887999778303315595485126
Q gi|254780877|r 643 VSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGA 722 (853)
Q Consensus 643 vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~ 722 (853)
T Consensus 566 VSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs 645 (786)
T COG0542 566 VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGS 645 (786)
T ss_pred HHHHHCCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCEECCCCCEEECCEEEEEEECCCCH
T ss_conf 99872799987200655400376606998688841264408899999999846780554899888430028998450265
Q ss_pred HHHHCC--------HHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 876403--------267999999999862885772666815862889989999999999999999998579899998899
Q gi|254780877|r 723 EYLIED--------GDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQV 794 (853)
Q Consensus 723 ~~~~~~--------~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~ 794 (853)
T Consensus 646 ~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a 725 (786)
T COG0542 646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEA 725 (786)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 98975313432100467889999999853899898512617850679989999999999999999998689559988899
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
Q ss_conf 9999970898220621579999987334999999708688978899999899489897
Q gi|254780877|r 795 IDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDDDNLNFRV 852 (853)
Q Consensus 795 ~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~~~~~~~~ 852 (853)
T Consensus 726 ~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~~~~~~~~~v~v~~~~~~~~~~~ 783 (786)
T COG0542 726 KDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVKVDVDDEKIKFVS 783 (786)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEE
T ss_conf 9999996468776736799999999989999999846657996799995176378863