HHsearch alignment for GI: 254780877 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.13 E-value=2.6e-06 Score=70.30 Aligned_cols=189 Identities=14% Similarity=0.182 Sum_probs=98.7
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 71799999999999999982899633899999986188766899999739998999999999997459547897777069
Q gi|254780877|r 5 KYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGGAQVYLS 84 (853)
Q Consensus 5 kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~~~~~~S 84 (853)
T Consensus 73 ~~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 150 (786)
T COG0542 73 YLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGN-EVDSKNAEEDQ- 150 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCH-
T ss_conf 8787799999999999875157655589999998617622789999866577777999999973466-66776665324-
Q ss_pred HHHHHHHHHHHHHHHHC-CCCCCCHHH---HHHHHH-HCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 89999999999999971-987025999---876687-2775178899975999899999999873778878777546761
Q gi|254780877|r 85 QPLAVILSKSEEIAKKS-GDSFVTAEK---FLLAMV-METGGIGESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFD 159 (853)
Q Consensus 85 ~~l~rvL~~A~~~A~~~-g~~~I~~eh---LLlAIl-~e~~s~a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~ 159 (853)
T Consensus 151 ~~L~~~~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L--~~-- 226 (786)
T COG0542 151 DALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESL--KD-- 226 (786)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHH--CC--
T ss_conf 46998741147998658988773747999999999835688998476689888999998999997469999787--58--
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 07886443569987298533333-57899999996336777866895
Q gi|254780877|r 160 ALKKYCRDLTEEARNGKLDPVIG-RDDEMRRAIQVLSRRTKNNPVLI 205 (853)
Q Consensus 160 ~L~ky~~DLTe~Ar~GkLDPVIG-Re~EI~~~~~iL~r~~k~n~~lv 205 (853)
T Consensus 227 -~~i~sLD~g~LvAGakyR---GeFEeRlk~vl~ev~~~~--~vILF 267 (786)
T COG0542 227 -KRIYSLDLGSLVAGAKYR---GEFEERLKAVLKEVEKSK--NVILF 267 (786)
T ss_pred -CEEEEECHHHHHCCCCCC---CCHHHHHHHHHHHHHCCC--CEEEE
T ss_conf -879971487674646535---738999999999985179--84999