HHsearch alignment for GI: 254780877 and conserved domain: COG1066

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=96.26  E-value=0.0085  Score=41.68  Aligned_cols=180  Identities=19%  Similarity=0.352  Sum_probs=112.2

Q ss_pred             HHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH------------H
Q ss_conf             9996336--7778668952887407779999999873489984445743788731354217454202------------4
Q gi|254780877|r  190 AIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE------------F  255 (853)
Q Consensus       190 ~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~------------~  255 (853)
T Consensus        82 ldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--------~vLYVsGEES~~QiklRA~RL~~~~~~l~l~a  153 (456)
T COG1066          82 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--------KVLYVSGEESLQQIKLRADRLGLPTNNLYLLA  153 (456)
T ss_pred             HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC--------CEEEEECCCCHHHHHHHHHHHCCCCCCEEEEH
T ss_conf             8765367723661799736898779899999999987059--------57999677678999999998289964557741


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC--CCCCCCC-----HHHHHHHHHCCCCE-EEEEEECHHHHHHHHHCCH
Q ss_conf             54589999998607997699963627730266--6554335-----88887653124660-4899744899999730011
Q gi|254780877|r  256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAG--KTDGAMD-----ASNLLKPSLARGEL-HCIGATTLDEYRKYIEKDP  327 (853)
Q Consensus       256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG--~~~g~~D-----aan~LKP~LarG~l-~~IgaTT~~Eyrk~iEkD~  327 (853)
T Consensus       154 Et~~e~I~~~l~~~-~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG---------HVTKeG  223 (456)
T COG1066         154 ETNLEDIIAELEQE-KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG---------HVTKEG  223 (456)
T ss_pred             HCCHHHHHHHHHHC-CCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE---------EECCCC
T ss_conf             12899999999854-99789996541230263357998589999999999999987597399998---------882466


Q ss_pred             HH------HHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             13------20231111157776789999999789865414961---01589999986333202457674
Q gi|254780877|r  328 AL------ARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVR---ISDSALVSAAVLSNRYITDRFLP  387 (853)
Q Consensus       328 Al------~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~---i~d~al~~av~ls~rYi~~r~lP  387 (853)
T Consensus       224 ~IAGPrvLEHmVDtVlyFEGd~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~  292 (456)
T COG1066         224 AIAGPRVLEHMVDTVLYFEGDRHSRYRILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQ  292 (456)
T ss_pred             CCCCCHHEEEEEEEEEEEECCCCCCEEEEEHHCCCCCCCCCEEEEEEECCCEEEECCCHHHHHHCCCCC
T ss_conf             326840043653689998305777556500321367765532688984388468038278674226778