HHsearch alignment for GI: 254780877 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=97.85 E-value=0.00027 Score=53.90 Aligned_cols=152 Identities=23% Similarity=0.352 Sum_probs=86.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCC-
Q ss_conf 29853333357899999996336--777866895288740777999999987348998444574378873135421745-
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAK- 250 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~- 250 (853)
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH-~~s~r~-----~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIH-ALSARR-----AEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-HHHHCC-----CCCCEEEEEHHHHCCCHHH
T ss_conf 2156666356888999999998618999847986688753889999999-861213-----5898799777773767777
Q ss_pred ----------CCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------C
Q ss_conf ----------42024545899999986079976999636277302666554335888876531246-------------6
Q gi|254780877|r 251 ----------FRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG-------------E 307 (853)
Q Consensus 251 ----------~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG-------------~ 307 (853)
T Consensus 148 ~eLFG~~kGaftGa~~~-k~Glfe---~A~GG-tLfLDEI~~LP~~~--------Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 148 AELFGHEKGAFTGAQGG-KAGLFE---QANGG-TLFLDEIHRLPPEG--------QEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred HHHHCCCCCEEECCCCC-CCCHHE---ECCCC-EEEHHHHHHCCHHH--------HHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 77732000000256678-676420---52797-77656365379858--------9999999871865766888886777
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHH
Q ss_conf 04899744899999730011132023111115777678
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTD 345 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~ 345 (853)
T Consensus 215 VRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrE 251 (403)
T COG1221 215 VRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRE 251 (403)
T ss_pred CEEEECCCCCHHHHHHHH-CCHHHHHCCCEECCCCHHH
T ss_conf 404513566879998740-5255641675431897243