HHsearch alignment for GI: 254780877 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.61 E-value=2.9e-06 Score=69.91 Aligned_cols=160 Identities=27% Similarity=0.389 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHH-------------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHH
Q ss_conf 333578999999963-------------3677786689528874077799999998734899844457437887313542
Q gi|254780877|r 180 VIGRDDEMRRAIQVL-------------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALI 246 (853)
Q Consensus 180 VIGRe~EI~~~~~iL-------------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 246 (853)
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~----------T~AtFIrvvgSElV 222 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ----------TDATFIRVVGSELV 222 (406)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHC----------CCCEEEEECCHHHH
T ss_conf 35889999999998403366888999749999971276689997588999998720----------58669994219999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC-C-CCC---------HHHHHHHHHCCCCEEEEEEEC
Q ss_conf 17454202454589999998607997699963627730266655-4-335---------888876531246604899744
Q gi|254780877|r 247 AGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTD-G-AMD---------ASNLLKPSLARGELHCIGATT 315 (853)
Q Consensus 247 ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~-g-~~D---------aan~LKP~LarG~l~~IgaTT 315 (853)
T Consensus 223 --qKYiGEGaRlVRelF~lArek-aPsIIFiDEIDAIg-~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 223 --QKYIGEGARLVRELFELAREK-APSIIFIDEIDAIG-AKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred --HHHHCCCHHHHHHHHHHHHHC-CCEEEEEECHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf --998341169999999987414-98499983112231-11136888850999999999998605889788768998558
Q ss_pred HHHHHHHHHCCHHHHH--CCC-EEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999997300111320--231-111157776789999999789865
Q gi|254780877|r 316 LDEYRKYIEKDPALAR--RFQ-SLLVGEPTVTDTISILRGLKERYE 358 (853)
Q Consensus 316 ~~Eyrk~iEkD~Al~R--RFq-~i~V~Eps~~~t~~iL~gl~~~yE 358 (853)
T Consensus 299 R~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~ 339 (406)
T COG1222 299 RPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN 339 (406)
T ss_pred CCC-----CCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 855-----55766508875453011689897899999998762146