HHsearch alignment for GI: 254780877 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=98.61 E-value=1.6e-06 Score=71.99 Aligned_cols=111 Identities=21% Similarity=0.403 Sum_probs=81.4
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCC
Q ss_conf 10220214414989999999984045788799977830331559548512687640326799999999986288577266
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNR 751 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnR 751 (853)
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse-----------~a-PIii~AtNRG~~kiRGTd~~s--------PhGIP~DlLDR 352 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE-----------LA-PIIILATNRGMTKIRGTDIES--------PHGIPLDLLDR 352 (450)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHCC-----------CC-CEEEEECCCCEEEECCCCCCC--------CCCCCHHHHHH
T ss_conf 42897321345578999999876314-----------67-579997177500121667768--------88898766622
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 681586288998999999999999999999857989999889999999708982206215799999
Q gi|254780877|r 752 LDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ 817 (853)
Q Consensus 752 id~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~ 817 (853)
T Consensus 353 l-lII~t~py~~~EireIi~iRa---------~ee~i~l~~~Ale~L~~ig~e-----tSLRYa~q 403 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRA---------KEEDIELSDDALEYLTDIGEE-----TSLRYAVQ 403 (450)
T ss_pred E-EEEECCCCCHHHHHHHHHHHH---------HHHCCCCCHHHHHHHHHHCHH-----HHHHHHHH
T ss_conf 5-677447798899999999764---------354030488899999751503-----44899998