HHsearch alignment for GI: 254780877 and conserved domain: COG1224

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=98.61  E-value=1.6e-06  Score=71.99  Aligned_cols=111  Identities=21%  Similarity=0.403  Sum_probs=81.4

Q ss_pred             CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCC
Q ss_conf             10220214414989999999984045788799977830331559548512687640326799999999986288577266
Q gi|254780877|r  672 QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNR  751 (853)
Q Consensus       672 sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnR  751 (853)
T Consensus       293 GVLFIDEvHmLDIE~FsFlnrAlEse-----------~a-PIii~AtNRG~~kiRGTd~~s--------PhGIP~DlLDR  352 (450)
T COG1224         293 GVLFIDEVHMLDIECFSFLNRALESE-----------LA-PIIILATNRGMTKIRGTDIES--------PHGIPLDLLDR  352 (450)
T ss_pred             CEEEEECHHHHHHHHHHHHHHHHHCC-----------CC-CEEEEECCCCEEEECCCCCCC--------CCCCCHHHHHH
T ss_conf             42897321345578999999876314-----------67-579997177500121667768--------88898766622


Q ss_pred             CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             681586288998999999999999999999857989999889999999708982206215799999
Q gi|254780877|r  752 LDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ  817 (853)
Q Consensus       752 id~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~  817 (853)
T Consensus       353 l-lII~t~py~~~EireIi~iRa---------~ee~i~l~~~Ale~L~~ig~e-----tSLRYa~q  403 (450)
T COG1224         353 L-LIISTRPYSREEIREIIRIRA---------KEEDIELSDDALEYLTDIGEE-----TSLRYAVQ  403 (450)
T ss_pred             E-EEEECCCCCHHHHHHHHHHHH---------HHHCCCCCHHHHHHHHHHCHH-----HHHHHHHH
T ss_conf             5-677447798899999999764---------354030488899999751503-----44899998