HHsearch alignment for GI: 254780877 and conserved domain: COG1241
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair].
Probab=97.98 E-value=0.00079 Score=50.07 Aligned_cols=243 Identities=19% Similarity=0.256 Sum_probs=134.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCE-------EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 235547767459489999999999874101236566512-------8987267861688999999987237765300224
Q gi|254780877|r 561 RIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMG-------SFMFLGPTGVGKTELVKSLARLLFDDENSMIRID 633 (853)
Q Consensus 561 ~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~-------~flf~GptGvGKTelak~la~~lf~~~~~lir~d 633 (853)
T Consensus 279 ~l~~SiaPsIyG~e~VKkAilLqL----fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a---Pr~vyt-- 349 (682)
T COG1241 279 ILIKSIAPSIYGHEDVKKAILLQL----FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA---PRGVYT-- 349 (682)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHH----CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC---CCEEEE--
T ss_conf 999974151038199999999996----08976647998620242269981798251999999988648---840797--
Q ss_pred HHHHCCCCCCCHHHCC---CCHHCC--CCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEE
Q ss_conf 4774034532013047---711203--56677421132215641022021441498999999998404578879997783
Q gi|254780877|r 634 MSEYMEKHSVSRLIGS---PPGYVG--YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVD 708 (853)
Q Consensus 634 Msey~e~~~vs~LiGa---ppGYvG--~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~ 708 (853)
T Consensus 350 ---sgkgss~~GLTAav~rd~~-tge~~LeaGALVlA----D~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAG--- 418 (682)
T COG1241 350 ---SGKGSSAAGLTAAVVRDKV-TGEWVLEAGALVLA----DGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAG--- 418 (682)
T ss_pred ---CCCCCCCCCCEEEEEECCC-CCEEEEECCEEEEE----CCCEEEEEECCCCCHHHHHHHHHHHHHCEEEECCCC---
T ss_conf ---2641254573069997067-76078867779992----497799970567776789999999875275120554---
Q ss_pred CCCCEEEECCCHHHHHHHCC---------HHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCC-CH----HHHHHHHHHHH
Q ss_conf 03315595485126876403---------267999999999862885772666815862889-98----99999999999
Q gi|254780877|r 709 FRNTLIIMTSNLGAEYLIED---------GDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKL-RK----EDMAKIVRIQL 774 (853)
Q Consensus 709 f~n~iii~TsN~G~~~~~~~---------~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l-~~----~~~~~i~~~~l 774 (853)
T Consensus 419 -----I~atLnARcsvLAAaNP~~Gryd~~~~~~enI------~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~ 487 (682)
T COG1241 419 -----ITATLNARCSVLAAANPKFGRYDPKKTVAENI------NLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHR 487 (682)
T ss_pred -----EEEECCHHHHHHHHHCCCCCCCCCCCCHHHHC------CCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf -----25411144445665188777679999978855------8983577517754770578885335999999999863
Q ss_pred --------------------HH-HHHHH--HHCCCEEEECHHHHHHHHHCCCCC-C------------CCCHHHHHHHHH
Q ss_conf --------------------99-99999--857989999889999999708982-2------------062157999998
Q gi|254780877|r 775 --------------------GR-VLSLI--KERNISMDFDDQVIDWLSCRGYDP-S------------YGARPLKRVIQR 818 (853)
Q Consensus 775 --------------------~~-l~~~l--~~~~i~l~~~~~~~~~l~~~~~~~-~------------~GaR~l~r~i~~ 818 (853)
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiR- 566 (682)
T COG1241 488 GEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIR- 566 (682)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-
T ss_conf 4565322333322222346589999999987505896128999999999998765201223456754561999999999-
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 733499999970868897
Q gi|254780877|r 819 YIQNPLAERVLSQTISDG 836 (853)
Q Consensus 819 ~i~~~la~~il~~~~~~g 836 (853)
T Consensus 567 -LaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 567 -LAEAHAKMRLSDVVEEE 583 (682)
T ss_pred -HHHHHHHHHCCCCCCHH
T ss_conf -99998865444777889