HHsearch alignment for GI: 254780877 and conserved domain: COG1474
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones].
Probab=98.76 E-value=2.4e-07 Score=78.65 Aligned_cols=199 Identities=23% Similarity=0.307 Sum_probs=127.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHCCCCCC
Q ss_conf 776745948999999999987410123656651289872678616889999999872377653--002244774034532
Q gi|254780877|r 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENS--MIRIDMSEYMEKHSV 643 (853)
Q Consensus 566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~--lir~dMsey~e~~~v 643 (853)
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~----~~p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRG----ERPS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred CCHHCCCHHHHHHHHHHHHHHHHCC----CCCC-CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHH
T ss_conf 8220103488999999999998558----9986-0799889998732899999999973315675799951307878799
Q ss_pred CHHH----CCCCHHCCCCCC---CCCCHHHH-CCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEE
Q ss_conf 0130----477112035667---74211322-156410220214414989999999984045788799977830331559
Q gi|254780877|r 644 SRLI----GSPPGYVGYEEG---GALTEAVR-RHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLII 715 (853)
Q Consensus 644 s~Li----GappGYvG~~~g---g~Lte~vr-~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii 715 (853)
T Consensus 90 ~~~i~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~---~~-----~~~v~vi 160 (366)
T COG1474 90 LSKILNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG---EN-----KVKVSII 160 (366)
T ss_pred HHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHHHEECCCC---CC-----CEEEEEE
T ss_conf 9999998268997-6763268999999977741875999976476541546414551112477---67-----5379999
Q ss_pred ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 54851268764032679999999998628857726668158628899899999999999999999985798999988999
Q gi|254780877|r 716 MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795 (853)
Q Consensus 716 ~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~ 795 (853)
T Consensus 161 ~i~n~---------~~~~~~ld~rv~s~l~~------~~-I~F~pY~a~el~~Il~~R~~~~-------~~~~~~~~~vl 217 (366)
T COG1474 161 AVSND---------DKFLDYLDPRVKSSLGP------SE-IVFPPYTAEELYDILRERVEEG-------FSAGVIDDDVL 217 (366)
T ss_pred EEECC---------HHHHHHHHHHHHHCCCC------CE-EEECCCCHHHHHHHHHHHHHHH-------HCCCCCCHHHH
T ss_conf 97354---------88999875667650687------63-5528989899999999999854-------04687480399
Q ss_pred HHHHHC
Q ss_conf 999970
Q gi|254780877|r 796 DWLSCR 801 (853)
Q Consensus 796 ~~l~~~ 801 (853)
T Consensus 218 ~lia~~ 223 (366)
T COG1474 218 KLIAAL 223 (366)
T ss_pred HHHHHH
T ss_conf 999998