HHsearch alignment for GI: 254780877 and conserved domain: COG1643

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=96.93  E-value=0.002  Score=46.76  Aligned_cols=148  Identities=30%  Similarity=0.451  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH-HHHHHHH--CCCCCHHHCCCEEEEEEHHHHHC---CC---
Q ss_conf             333357899999996336777866895288740777999-9999873--48998444574378873135421---74---
Q gi|254780877|r  179 PVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIE-GLASRII--NGDIPESLKGKRLMALDMGALIA---GA---  249 (853)
Q Consensus       179 PVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive-~la~~i~--~~~vp~~l~~~~i~~ld~~~l~a---g~---  249 (853)
T Consensus        50 Pv~~~~~~i~~ai---~~--~~vvii~getGsGKTTqlP~~lle~g~~~~g~I-~~tQPRRlAArsvA~RvAeel~~~~G  123 (845)
T COG1643          50 PVTAVRDEILKAI---EQ--NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKI-GCTQPRRLAARSVAERVAEELGEKLG  123 (845)
T ss_pred             CCHHHHHHHHHHH---HH--CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE-EECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             8188899999999---86--978998679988758788999996001668759-96584389999999999998389867


Q ss_pred             ---CCCCHHHHHH-----------HHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCH-HHHHHHHHC--CCCEE
Q ss_conf             ---5420245458-----------9999998607---99769996362773026665543358-888765312--46604
Q gi|254780877|r  250 ---KFRGEFEERL-----------KSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDA-SNLLKPSLA--RGELH  309 (853)
Q Consensus       250 ---~~rg~~e~r~-----------~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Da-an~LKP~La--rG~l~  309 (853)
T Consensus       124 ~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-----Sl-~tDilLgllk~~~~~rr~DLK  197 (845)
T COG1643         124 ETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-----SL-NTDILLGLLKDLLARRRDDLK  197 (845)
T ss_pred             CEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHH-----HH-HHHHHHHHHHHHHHHCCCCCE
T ss_conf             654379996226787714689514799999843802045877997013355-----68-889999999999864688705


Q ss_pred             EEE--EE-CHHHHHHHHHCCHHH--HHCCCEEEC
Q ss_conf             899--74-489999973001113--202311111
Q gi|254780877|r  310 CIG--AT-TLDEYRKYIEKDPAL--ARRFQSLLV  338 (853)
Q Consensus       310 ~Ig--aT-T~~Eyrk~iEkD~Al--~RRFq~i~V  338 (853)
T Consensus       198 iIimSATld~~rfs~~f~~apvi~i~GR~fPVei  231 (845)
T COG1643         198 LIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEI  231 (845)
T ss_pred             EEEEECCCCHHHHHHHCCCCCEEEECCCCCCEEE
T ss_conf             9997253588999976289987875588664478