HHsearch alignment for GI: 254780877 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=96.93 E-value=0.002 Score=46.76 Aligned_cols=148 Identities=30% Similarity=0.451 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH-HHHHHHH--CCCCCHHHCCCEEEEEEHHHHHC---CC---
Q ss_conf 333357899999996336777866895288740777999-9999873--48998444574378873135421---74---
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIE-GLASRII--NGDIPESLKGKRLMALDMGALIA---GA--- 249 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive-~la~~i~--~~~vp~~l~~~~i~~ld~~~l~a---g~--- 249 (853)
T Consensus 50 Pv~~~~~~i~~ai---~~--~~vvii~getGsGKTTqlP~~lle~g~~~~g~I-~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 50 PVTAVRDEILKAI---EQ--NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKI-GCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred CCHHHHHHHHHHH---HH--CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE-EECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8188899999999---86--978998679988758788999996001668759-96584389999999999998389867
Q ss_pred ---CCCCHHHHHH-----------HHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCH-HHHHHHHHC--CCCEE
Q ss_conf ---5420245458-----------9999998607---99769996362773026665543358-888765312--46604
Q gi|254780877|r 250 ---KFRGEFEERL-----------KSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDA-SNLLKPSLA--RGELH 309 (853)
Q Consensus 250 ---~~rg~~e~r~-----------~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Da-an~LKP~La--rG~l~ 309 (853)
T Consensus 124 ~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-----Sl-~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 124 ETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-----SL-NTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred CEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHH-----HH-HHHHHHHHHHHHHHHCCCCCE
T ss_conf 654379996226787714689514799999843802045877997013355-----68-889999999999864688705
Q ss_pred EEE--EE-CHHHHHHHHHCCHHH--HHCCCEEEC
Q ss_conf 899--74-489999973001113--202311111
Q gi|254780877|r 310 CIG--AT-TLDEYRKYIEKDPAL--ARRFQSLLV 338 (853)
Q Consensus 310 ~Ig--aT-T~~Eyrk~iEkD~Al--~RRFq~i~V 338 (853)
T Consensus 198 iIimSATld~~rfs~~f~~apvi~i~GR~fPVei 231 (845)
T COG1643 198 LIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEI 231 (845)
T ss_pred EEEEECCCCHHHHHHHCCCCCEEEECCCCCCEEE
T ss_conf 9997253588999976289987875588664478