HHsearch alignment for GI: 254780877 and conserved domain: COG1936

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism].
Probab=96.99  E-value=0.009  Score=41.48  Aligned_cols=143  Identities=19%  Similarity=0.277  Sum_probs=77.2

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHH
Q ss_conf             98726786168899999998723776530022447740345320130477112035667742113221564102202144
Q gi|254780877|r  601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIE  680 (853)
Q Consensus       601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiE  680 (853)
T Consensus         3 I~ITGTPGvGKTT~~~~L~-~l-g----~~~i~l~el~---------~e~~~~~~~de~-------r--~s~~vD~d~~~   58 (180)
T COG1936           3 IAITGTPGVGKTTVCKLLR-EL-G----YKVIELNELA---------KENGLYTEYDEL-------R--KSVIVDVDKLR   58 (180)
T ss_pred             EEEECCCCCCHHHHHHHHH-HH-C----CCEEEHHHHH---------HHCCCEECCCCC-------C--CEEEEEHHHHH
T ss_conf             7993799986687999999-82-9----8466199999---------866971143776-------6--15886679999


Q ss_pred             HCCHHHHHHHHHHHHCCEEECCCC-CEEECCCCEEEECCCHHH--HHHHC---CHHHHHHHHHHHHHHHCCHHHHCCCCC
Q ss_conf             149899999999840457887999-778303315595485126--87640---326799999999986288577266681
Q gi|254780877|r  681 KAHSDVHNILLQVLDDGRLTDSQG-RTVDFRNTLIIMTSNLGA--EYLIE---DGDSVHDKVMGIVRSAFKPEFLNRLDE  754 (853)
Q Consensus       681 Kah~~v~~~llqild~G~ltd~~G-~~v~f~n~iii~TsN~G~--~~~~~---~~~~~~~~~~~~l~~~f~peflnRid~  754 (853)
T Consensus        59 ~~le~~---~---~~~~~Ivd~H~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~  132 (180)
T COG1936          59 KRLEEL---L---REGSGIVDSHLSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEA  132 (180)
T ss_pred             HHHHHH---H---CCCCEEEECHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             888887---5---0588476126662178788899971898999999987699878988779999999999999973476


Q ss_pred             EEECCCCCHHHHHHHHHHHH
Q ss_conf             58628899899999999999
Q gi|254780877|r  755 IILFEKLRKEDMAKIVRIQL  774 (853)
Q Consensus       755 iv~F~~l~~~~~~~i~~~~l  774 (853)
T Consensus       133 v~evdt-t~~s~ee~~~~i~  151 (180)
T COG1936         133 VIEVDT-TNRSPEEVAEEII  151 (180)
T ss_pred             EEEEEC-CCCCHHHHHHHHH
T ss_conf             499978-9999999999999