HHsearch alignment for GI: 254780877 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.30  E-value=1.2e-08  Score=89.33  Aligned_cols=222  Identities=21%  Similarity=0.334  Sum_probs=161.4

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCH
Q ss_conf             77674594899999999998741012365665128987267861688999999987237765300224477403453201
Q gi|254780877|r  566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSR  645 (853)
Q Consensus       566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~  645 (853)
T Consensus       139 ~~~~liG~S~am~~l~~~i~kv----A~s~a~---VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESE  211 (464)
T COG2204         139 LGGELVGESPAMQQLRRLIAKV----APSDAS---VLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESE  211 (464)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf             5677520699999999999998----477997---899778987589999999860744589925633464898887777


Q ss_pred             HHCCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECC
Q ss_conf             3047711203566774211322156-------410220214414989999999984045788799977830331559548
Q gi|254780877|r  646 LIGSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTS  718 (853)
Q Consensus       646 LiGappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~Ts  718 (853)
T Consensus       212 LFG-------hek-GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT  283 (464)
T COG2204         212 LFG-------HEK-GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAAT  283 (464)
T ss_pred             HHC-------CCC-CCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCEECEEEEEEEEC
T ss_conf             614-------565-676776434576157737965873231109999999999998707067358886000016999605


Q ss_pred             CHHHHHHHCCHHHHHHHHHHH-HHHHCCHHHHCCCCCEEECC--CCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             512687640326799999999-98628857726668158628--899--8999999999999999999857989999889
Q gi|254780877|r  719 NLGAEYLIEDGDSVHDKVMGI-VRSAFKPEFLNRLDEIILFE--KLR--KEDMAKIVRIQLGRVLSLIKERNISMDFDDQ  793 (853)
Q Consensus       719 N~G~~~~~~~~~~~~~~~~~~-l~~~f~peflnRid~iv~F~--~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~  793 (853)
T Consensus       284 ~~--------------dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~--~~~~~~s~~  346 (464)
T COG2204         284 NR--------------DLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELG--RPPKGFSPE  346 (464)
T ss_pred             CC--------------CHHHHHHCCCCHHHHHHHHC-CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCHH
T ss_conf             77--------------89999881973788886523-31104876223620079999999999999809--998887999


Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999997089822062157999998733
Q gi|254780877|r  794 VIDWLSCRGYDPSYGARPLKRVIQRYIQ  821 (853)
Q Consensus       794 ~~~~l~~~~~~~~~GaR~l~r~i~~~i~  821 (853)
T Consensus       347 a~~~L~~--y~WPGNVREL~N~ver~~i  372 (464)
T COG2204         347 ALAALLA--YDWPGNVRELENVVERAVI  372 (464)
T ss_pred             HHHHHHH--CCCCHHHHHHHHHHHHHHH
T ss_conf             9999973--8998189999999999985