HHsearch alignment for GI: 254780877 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.30 E-value=1.2e-08 Score=89.33 Aligned_cols=222 Identities=21% Similarity=0.334 Sum_probs=161.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCH
Q ss_conf 77674594899999999998741012365665128987267861688999999987237765300224477403453201
Q gi|254780877|r 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSR 645 (853)
Q Consensus 566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~ 645 (853)
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv----A~s~a~---VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESE 211 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV----APSDAS---VLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESE 211 (464)
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 5677520699999999999998----477997---899778987589999999860744589925633464898887777
Q ss_pred HHCCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECC
Q ss_conf 3047711203566774211322156-------410220214414989999999984045788799977830331559548
Q gi|254780877|r 646 LIGSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTS 718 (853)
Q Consensus 646 LiGappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~Ts 718 (853)
T Consensus 212 LFG-------hek-GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT 283 (464)
T COG2204 212 LFG-------HEK-GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAAT 283 (464)
T ss_pred HHC-------CCC-CCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCEECEEEEEEEEC
T ss_conf 614-------565-676776434576157737965873231109999999999998707067358886000016999605
Q ss_pred CHHHHHHHCCHHHHHHHHHHH-HHHHCCHHHHCCCCCEEECC--CCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 512687640326799999999-98628857726668158628--899--8999999999999999999857989999889
Q gi|254780877|r 719 NLGAEYLIEDGDSVHDKVMGI-VRSAFKPEFLNRLDEIILFE--KLR--KEDMAKIVRIQLGRVLSLIKERNISMDFDDQ 793 (853)
Q Consensus 719 N~G~~~~~~~~~~~~~~~~~~-l~~~f~peflnRid~iv~F~--~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~ 793 (853)
T Consensus 284 ~~--------------dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~--~~~~~~s~~ 346 (464)
T COG2204 284 NR--------------DLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELG--RPPKGFSPE 346 (464)
T ss_pred CC--------------CHHHHHHCCCCHHHHHHHHC-CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCHH
T ss_conf 77--------------89999881973788886523-31104876223620079999999999999809--998887999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999997089822062157999998733
Q gi|254780877|r 794 VIDWLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 794 ~~~~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
T Consensus 347 a~~~L~~--y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 347 ALAALLA--YDWPGNVRELENVVERAVI 372 (464)
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHHH
T ss_conf 9999973--8998189999999999985