HHsearch alignment for GI: 254780877 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=98.68 E-value=5.7e-07 Score=75.63 Aligned_cols=199 Identities=24% Similarity=0.357 Sum_probs=132.7
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 35547767459489999999999874101236566512898726786168899999998723776530022447740345
Q gi|254780877|r 562 IETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKH 641 (853)
Q Consensus 562 l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~ 641 (853)
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk----~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---n~-k---------- 81 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAK----KRGEALDHVLLFGPPGLGKTTLAHIIANELGV---NL-K---------- 81 (332)
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHH----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CE-E----------
T ss_conf 586548885183999999999999998----44987674786479987688899999998567---73-7----------
Q ss_pred CCCHHHCCCCHHCC-CCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC--CCC---CEEEC--C-CC
Q ss_conf 32013047711203-5667742113221564102202144149899999999840457887--999---77830--3-31
Q gi|254780877|r 642 SVSRLIGSPPGYVG-YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTD--SQG---RTVDF--R-NT 712 (853)
Q Consensus 642 ~vs~LiGappGYvG-~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd--~~G---~~v~f--~-n~ 712 (853)
T Consensus 82 -----~tsGp~leK~gDlaaiLt~---Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 82 -----ITSGPALEKPGDLAAILTN---LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred -----ECCCCCCCCHHHHHHHHHC---CCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEE
T ss_conf -----6366201572659999863---98677677725531474289896467531057789724875534763799813
Q ss_pred EEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 55954851268764032679999999998628857726668158628899899999999999999999985798999988
Q gi|254780877|r 713 LIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDD 792 (853)
Q Consensus 713 iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~ 792 (853)
T Consensus 154 LIGATTr~G~---------------------lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a---------~~l~i~i~~ 203 (332)
T COG2255 154 LIGATTRAGM---------------------LTNPLRDRFGIIQRLEFYTVEELEEIVKRSA---------KILGIEIDE 203 (332)
T ss_pred EEEECCCCCC---------------------CCCHHHHHCCCEEEEECCCHHHHHHHHHHHH---------HHHCCCCCH
T ss_conf 7510134664---------------------5633688628604540588899999999888---------873877685
Q ss_pred HHHHHHHHCCC-CCCCCCHHHHHHH
Q ss_conf 99999997089-8220621579999
Q gi|254780877|r 793 QVIDWLSCRGY-DPSYGARPLKRVI 816 (853)
Q Consensus 793 ~~~~~l~~~~~-~~~~GaR~l~r~i 816 (853)
T Consensus 204 ~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 204 EAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 7999999863699389999999999