HHsearch alignment for GI: 254780877 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.18 E-value=1.9e-10 Score=103.85 Aligned_cols=188 Identities=22% Similarity=0.359 Sum_probs=119.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v---~--~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~----gvkdlr 90 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAV---E--AGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS----GVKDLR 90 (436)
T ss_pred HHHCCHHHHHCC-CCHHHHHH---H--CCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCC----CHHHHH
T ss_conf 785571866189-94389999---6--4998605777899988889999998761---776699515234----679999
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf 47711203566774211322156----41022021441498999999998404578879997783033155954851268
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~ 723 (853)
T Consensus 91 ~------------i-~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii------------lIGATT----- 140 (436)
T COG2256 91 E------------I-IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII------------LIGATT----- 140 (436)
T ss_pred H------------H-HHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEEE------------EEECCC-----
T ss_conf 9------------9-999999872588349987225333744565510332488689------------996267-----
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCC
Q ss_conf 76403267999999999862885772666815862889989999999999999999998579899998899999997089
Q gi|254780877|r 724 YLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGY 803 (853)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~ 803 (853)
T Consensus 141 ---ENPsF-----------~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~--~~~~~i~~~a~~~l~~~s- 202 (436)
T COG2256 141 ---ENPSF-----------ELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLG--GQIIVLDEEALDYLVRLS- 202 (436)
T ss_pred ---CCCCE-----------EECHHHHHHH-HEEEEECCCHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHC-
T ss_conf ---89871-----------4038886110-41565169989999999999865413777--655668889999999862-
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 822062157999998
Q gi|254780877|r 804 DPSYGARPLKRVIQR 818 (853)
Q Consensus 804 ~~~~GaR~l~r~i~~ 818 (853)
T Consensus 203 --~GD~R~aLN~LE~ 215 (436)
T COG2256 203 --NGDARRALNLLEL 215 (436)
T ss_pred --CCHHHHHHHHHHH
T ss_conf --8619999889999