HHsearch alignment for GI: 254780877 and conserved domain: COG4650
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=97.13 E-value=0.01 Score=41.11 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=11.3
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 102202144149899999999840457
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~ 698 (853)
T Consensus 284 gmlfldeigelgadeqamllkaieekr 310 (531)
T COG4650 284 GMLFLDEIGELGADEQAMLLKAIEEKR 310 (531)
T ss_pred CEEEHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 657567433247527889999988712