HHsearch alignment for GI: 254780877 and conserved domain: COG4650

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=97.13  E-value=0.01  Score=41.11  Aligned_cols=27  Identities=26%  Similarity=0.559  Sum_probs=11.3

Q ss_pred             CEEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf             102202144149899999999840457
Q gi|254780877|r  672 QVVLFDEIEKAHSDVHNILLQVLDDGR  698 (853)
Q Consensus       672 sVil~DEiEKah~~v~~~llqild~G~  698 (853)
T Consensus       284 gmlfldeigelgadeqamllkaieekr  310 (531)
T COG4650         284 GMLFLDEIGELGADEQAMLLKAIEEKR  310 (531)
T ss_pred             CEEEHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf             657567433247527889999988712