HHsearch alignment for GI: 254780877 and conserved domain: KOG0726
>KOG0726 consensus.
Probab=97.10 E-value=0.0014 Score=48.01 Aligned_cols=137 Identities=28% Similarity=0.439 Sum_probs=88.2
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 36777866895288740777999999987348998444574378873135421745420245458999999860799769
Q gi|254780877|r 195 SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEII 274 (853)
Q Consensus 195 ~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~i 274 (853)
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVANq----TSATFl---RvvG---seLi--QkylGdGpklvRqlF~vA~e~-apSI 281 (440)
T KOG0726 215 GIKPPKGVILYGEPGTGKTLLAKAVANQ----TSATFL---RVVG---SELI--QKYLGDGPKLVRELFRVAEEH-APSI 281 (440)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCC----CCHHHH---HHHH---HHHH--HHHHCCCHHHHHHHHHHHHHC-CCCE
T ss_conf 8899970588679997536888877245----521245---5650---8999--987365519999999888752-9826
Q ss_pred EEECCHHHHCCCCCC---CCC--------CCHHHHHHHHHCCCCEEEEEEECHHHHHHHHH-CCHHHHHC---CCEEECC
Q ss_conf 996362773026665---543--------35888876531246604899744899999730-01113202---3111115
Q gi|254780877|r 275 LFIDELHVLVGAGKT---DGA--------MDASNLLKPSLARGELHCIGATTLDEYRKYIE-KDPALARR---FQSLLVG 339 (853)
Q Consensus 275 lfide~h~~~gaG~~---~g~--------~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iE-kD~Al~RR---Fq~i~V~ 339 (853)
T Consensus 282 vFiDEIdAi-GtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr------ie~LDPaLiRPGrIDrKIef~ 354 (440)
T KOG0726 282 VFIDEIDAI-GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR------IETLDPALIRPGRIDRKIEFP 354 (440)
T ss_pred EEEEHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC------CCCCCHHHCCCCCCCCCCCCC
T ss_conf 986400110-4521347885078999999999874268665677589974165------344677552787543111257
Q ss_pred CCCHHHHHHHHH
Q ss_conf 777678999999
Q gi|254780877|r 340 EPTVTDTISILR 351 (853)
Q Consensus 340 Eps~~~t~~iL~ 351 (853)
T Consensus 355 ~pDe~TkkkIf~ 366 (440)
T KOG0726 355 LPDEKTKKKIFQ 366 (440)
T ss_pred CCCHHHHCEEEE
T ss_conf 975563231568