HHsearch alignment for GI: 254780877 and conserved domain: KOG2004
>KOG2004 consensus.
Probab=99.89 E-value=4.8e-19 Score=173.77 Aligned_cols=249 Identities=25% Similarity=0.442 Sum_probs=192.3
Q ss_pred HH-HCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 66-17866775100000001235547767459489999999999874101236566512898726786168899999998
Q gi|254780877|r 542 RW-TGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLAR 620 (853)
Q Consensus 542 ~~-TGIPv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~ 620 (853)
T Consensus 385 dwlt~LPWgk~S~En~-dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr-gs~qGkI--lCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004 385 DWLTSLPWGKSSTENL-DLARAKEILDEDHYGMEDVKERILEFIAVGKLR-GSVQGKI--LCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred HHHHHCCCCCCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCE--EEEECCCCCCCCCHHHHHHH
T ss_conf 9998488787873530-379898763465301688999999999987514-6678837--99868998773218999999
Q ss_pred HHCCCCCCCCCCCHHHHCCCCC----CCHHHCCCCHHCCCCCCCCCCHHHHC----CCCCEEEEHHHHHC----CHHHHH
Q ss_conf 7237765300224477403453----20130477112035667742113221----56410220214414----989999
Q gi|254780877|r 621 LLFDDENSMIRIDMSEYMEKHS----VSRLIGSPPGYVGYEEGGALTEAVRR----HPYQVVLFDEIEKA----HSDVHN 688 (853)
Q Consensus 621 ~lf~~~~~lir~dMsey~e~~~----vs~LiGappGYvG~~~gg~Lte~vr~----~P~sVil~DEiEKa----h~~v~~ 688 (853)
T Consensus 461 AL---nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPG--------kiIq~LK~v~t~NP--liLiDEvDKlG~g~qGDPas 527 (906)
T KOG2004 461 AL---NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPG--------KIIQCLKKVKTENP--LILIDEVDKLGSGHQGDPAS 527 (906)
T ss_pred HH---CCCEEEEECCCCCCHHHHCCCCEEEECCCCH--------HHHHHHHHHCCCCC--EEEEEHHHHHCCCCCCCHHH
T ss_conf 84---8746998536634277642542110014884--------89999986177886--58853223417887798689
Q ss_pred HHHHHHH---CCEEECCC-CCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHH
Q ss_conf 9999840---45788799-9778303315595485126876403267999999999862885772666815862889989
Q gi|254780877|r 689 ILLQVLD---DGRLTDSQ-GRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKE 764 (853)
Q Consensus 689 ~llqild---~G~ltd~~-G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~ 764 (853)
T Consensus 528 ALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i--------------------dtIP~pLlDRM-EvIelsGYv~e 586 (906)
T KOG2004 528 ALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI--------------------DTIPPPLLDRM-EVIELSGYVAE 586 (906)
T ss_pred HHHHHCCHHHCCCHHHHCCCCCCCHHHEEEEEECCCC--------------------CCCCHHHHHHH-HEEECCCCCHH
T ss_conf 9987439653553454202664211106889853644--------------------56985664122-32203672279
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCE---EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999857989---999889999999708982206215799999873349999997086
Q gi|254780877|r 765 DMAKIVRIQLGRVLSLIKERNIS---MDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQT 832 (853)
Q Consensus 765 ~~~~i~~~~l~~l~~~l~~~~i~---l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~ 832 (853)
T Consensus 587 EKv~IA~~yL--ip~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iek-I~Rk~Al~vv~~~ 653 (906)
T KOG2004 587 EKVKIAERYL--IPQALKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEK-ICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHH--HHHHHHHCCCCHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 8999999841--2578987499878658629999999999-9888767789999999-9999999999864