HHsearch alignment for GI: 254780877 and conserved domain: KOG2004

>KOG2004 consensus.
Probab=98.15  E-value=0.00011  Score=57.08  Aligned_cols=184  Identities=24%  Similarity=0.446  Sum_probs=118.0

Q ss_pred             HHHCCCCCC-CCCHHHHHHHHHHHHCC-CCCCC-----EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf             987298533-33357899999996336-77786-----689528874077799999998734899844457437887313
Q gi|254780877|r  171 EARNGKLDP-VIGRDDEMRRAIQVLSR-RTKNN-----PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG  243 (853)
Q Consensus       171 ~Ar~GkLDP-VIGRe~EI~~~~~iL~r-~~k~n-----~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~  243 (853)
T Consensus       403 ~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvG  472 (906)
T KOG2004         403 ARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVG  472 (906)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHH----------CCCEEEEECC
T ss_conf             989876346530168899999999998751466788379986899877321899999984----------8746998536


Q ss_pred             HHHC-----C--CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCC--------C---HHHHHHHHHC-
Q ss_conf             5421-----7--454202454589999998607997699963627730266655433--------5---8888765312-
Q gi|254780877|r  244 ALIA-----G--AKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAM--------D---ASNLLKPSLA-  304 (853)
Q Consensus       244 ~l~a-----g--~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~--------D---aan~LKP~La-  304 (853)
T Consensus       473 G~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~-NPliL-iDEvDKl-G~g~q-GDPasALLElLDPEQNanFlDHYLdV  548 (906)
T KOG2004         473 GMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTE-NPLIL-IDEVDKL-GSGHQ-GDPASALLELLDPEQNANFLDHYLDV  548 (906)
T ss_pred             CCCCHHHHCCCCEEEECCCCHHHHHHHHHHCCC-CCEEE-EEHHHHH-CCCCC-CCHHHHHHHHCCHHHCCCHHHHCCCC
T ss_conf             634277642542110014884899999861778-86588-5322341-78877-98689998743965355345420266


Q ss_pred             ---CCCEEEEEEECHHHHHHHHHC-CHHHHHCCCEEECCCCCHHHHHHHHH-HHHHHHHHHCC-----CCCCHHHHHHHH
Q ss_conf             ---466048997448999997300-11132023111115777678999999-97898654149-----610158999998
Q gi|254780877|r  305 ---RGELHCIGATTLDEYRKYIEK-DPALARRFQSLLVGEPTVTDTISILR-GLKERYEQHHK-----VRISDSALVSAA  374 (853)
Q Consensus       305 ---rG~l~~IgaTT~~Eyrk~iEk-D~Al~RRFq~i~V~Eps~~~t~~iL~-gl~~~yE~~H~-----V~i~d~al~~av  374 (853)
T Consensus       549 p~DLSkVLFicTAN------~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI  622 (906)
T KOG2004         549 PVDLSKVLFICTAN------VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI  622 (906)
T ss_pred             CCCHHHEEEEEECC------CCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
T ss_conf             42111068898536------445698566412232203672279899999984125789874998786586299999999