HHsearch alignment for GI: 254780877 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.26 E-value=2.4e-10 Score=103.08 Aligned_cols=197 Identities=23% Similarity=0.338 Sum_probs=129.7
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 54776745948999999999987410123656651289872678616889999999872377653002244774034532
Q gi|254780877|r 564 TEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV 643 (853)
Q Consensus 564 ~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~v 643 (853)
T Consensus 21 P~~l~efiGQ~~i~~~L~v~i~Aak----~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~---~~~~~tsGP~------- 86 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK----KRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPA------- 86 (328)
T ss_pred CCCHHHCCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---CCCEECCCCC-------
T ss_conf 8857663595999999999999999----6499988057658899889999999999868---8815624500-------
Q ss_pred CHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC--CCC---CEEECC---CCEEE
Q ss_conf 0130477112035667742113221564102202144149899999999840457887--999---778303---31559
Q gi|254780877|r 644 SRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTD--SQG---RTVDFR---NTLII 715 (853)
Q Consensus 644 s~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd--~~G---~~v~f~---n~iii 715 (853)
T Consensus 87 ---lek-~~----DL~~iLt~---l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIG 155 (328)
T PRK00080 87 ---LEK-AG----DLAALLTN---LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred ---CCC-HH----HHHHHHHH---CCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEE
T ss_conf ---167-47----89999960---88787676506532488899885798775234578647865324555899834740
Q ss_pred ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 54851268764032679999999998628857726668158628899899999999999999999985798999988999
Q gi|254780877|r 716 MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795 (853)
Q Consensus 716 ~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~ 795 (853)
T Consensus 156 ATTr~g~---------------------Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa---------~~l~i~i~~~~~ 205 (328)
T PRK00080 156 ATTRAGL---------------------LTSPLRDRFGIVQRLEFYTVEELEKIVKRSA---------RILGIEIDEEGA 205 (328)
T ss_pred CCCCCCC---------------------CCHHHHHHCCCEEEECCCCHHHHHHHHHHHH---------HHHCCCCCHHHH
T ss_conf 1367665---------------------7767897579336634589999999999999---------983988789999
Q ss_pred HHHHHCCC-CCCCCCHHHHHH
Q ss_conf 99997089-822062157999
Q gi|254780877|r 796 DWLSCRGY-DPSYGARPLKRV 815 (853)
Q Consensus 796 ~~l~~~~~-~~~~GaR~l~r~ 815 (853)
T Consensus 206 ~eIA~rSRGTPRiAnrLLrRv 226 (328)
T PRK00080 206 LEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred HHHHHHCCCCCHHHHHHHHHH
T ss_conf 999986389839999999999