HHsearch alignment for GI: 254780877 and conserved domain: PRK00080

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.26  E-value=2.4e-10  Score=103.08  Aligned_cols=197  Identities=23%  Similarity=0.338  Sum_probs=129.7

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             54776745948999999999987410123656651289872678616889999999872377653002244774034532
Q gi|254780877|r  564 TEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV  643 (853)
Q Consensus       564 ~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~v  643 (853)
T Consensus        21 P~~l~efiGQ~~i~~~L~v~i~Aak----~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~---~~~~~tsGP~-------   86 (328)
T PRK00080         21 PKSLDEFIGQEKVKENLKIFIEAAK----KRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPA-------   86 (328)
T ss_pred             CCCHHHCCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---CCCEECCCCC-------
T ss_conf             8857663595999999999999999----6499988057658899889999999999868---8815624500-------


Q ss_pred             CHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC--CCC---CEEECC---CCEEE
Q ss_conf             0130477112035667742113221564102202144149899999999840457887--999---778303---31559
Q gi|254780877|r  644 SRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTD--SQG---RTVDFR---NTLII  715 (853)
Q Consensus       644 s~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd--~~G---~~v~f~---n~iii  715 (853)
T Consensus        87 ---lek-~~----DL~~iLt~---l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIG  155 (328)
T PRK00080         87 ---LEK-AG----DLAALLTN---LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG  155 (328)
T ss_pred             ---CCC-HH----HHHHHHHH---CCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEE
T ss_conf             ---167-47----89999960---88787676506532488899885798775234578647865324555899834740


Q ss_pred             ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             54851268764032679999999998628857726668158628899899999999999999999985798999988999
Q gi|254780877|r  716 MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI  795 (853)
Q Consensus       716 ~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~  795 (853)
T Consensus       156 ATTr~g~---------------------Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa---------~~l~i~i~~~~~  205 (328)
T PRK00080        156 ATTRAGL---------------------LTSPLRDRFGIVQRLEFYTVEELEKIVKRSA---------RILGIEIDEEGA  205 (328)
T ss_pred             CCCCCCC---------------------CCHHHHHHCCCEEEECCCCHHHHHHHHHHHH---------HHHCCCCCHHHH
T ss_conf             1367665---------------------7767897579336634589999999999999---------983988789999


Q ss_pred             HHHHHCCC-CCCCCCHHHHHH
Q ss_conf             99997089-822062157999
Q gi|254780877|r  796 DWLSCRGY-DPSYGARPLKRV  815 (853)
Q Consensus       796 ~~l~~~~~-~~~~GaR~l~r~  815 (853)
T Consensus       206 ~eIA~rSRGTPRiAnrLLrRv  226 (328)
T PRK00080        206 LEIARRSRGTPRIANRLLRRV  226 (328)
T ss_pred             HHHHHHCCCCCHHHHHHHHHH
T ss_conf             999986389839999999999