HHsearch alignment for GI: 254780877 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=98.66 E-value=6.5e-06 Score=67.03 Aligned_cols=173 Identities=20% Similarity=0.380 Sum_probs=108.6
Q ss_pred CCCHHHHHHH--HHHHHCCCCC-CCEE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC----CCCC
Q ss_conf 3335789999--9996336777-8668-95288740777999999987348998444574378873135421----7454
Q gi|254780877|r 180 VIGRDDEMRR--AIQVLSRRTK-NNPV-LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA----GAKF 251 (853)
Q Consensus 180 VIGRe~EI~~--~~~iL~r~~k-~n~~-lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a----g~~~ 251 (853)
T Consensus 122 VvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~-p----~~~v~Y~tae~F~~~~v~al~- 195 (447)
T PRK00149 122 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVSSEKFTNDFVKALR- 195 (447)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCEEEEEEHHHHHHHHHHHHH-
T ss_conf 2269859999999999837676778558977998878899999999999858-9----972899549999999999985-
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE-ECHHHHHHHHHCCHHHH
Q ss_conf 20245458999999860799769996362773026665543358888765312466048997-44899999730011132
Q gi|254780877|r 252 RGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGA-TTLDEYRKYIEKDPALA 330 (853)
Q Consensus 252 rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~Iga-TT~~Eyrk~iEkD~Al~ 330 (853)
T Consensus 196 -~---~~~~~Fr~~yr~~---DvLliDDiqfl~gk~~t--qeeff~~fn~l~~~~kqiv~tsd~~P~~l~~-l--~~rL~ 263 (447)
T PRK00149 196 -N---NAMEEFKEKYRSV---DVLLIDDIQFLAGKEKT--QEEFFHTFNALHENNKQIVITSDRPPKELEG-L--EDRLR 263 (447)
T ss_pred -C---CCHHHHHHHHHCC---CEEEECHHHHHHCCHHH--HHHHHHHHHHHHHCCCEEEEECCCCHHHCCC-C--CHHHH
T ss_conf -1---8699999999728---85432148886055779--9999999999998499689957889676565-1--17788
Q ss_pred HCCC---EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 0231---1111577767899999997898654149610158999998
Q gi|254780877|r 331 RRFQ---SLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAA 374 (853)
Q Consensus 331 RRFq---~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av 374 (853)
T Consensus 264 SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~~----~~~~l~~~v~~~iA 306 (447)
T PRK00149 264 SRFEWGLTVDIEPPDLETRVAILQKKAEE----EGINLPNEVLEFIA 306 (447)
T ss_pred HHHHCCEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHH
T ss_conf 67637626510599999999999999997----28999989999999