HHsearch alignment for GI: 254780877 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=98.11 E-value=7.1e-05 Score=58.59 Aligned_cols=198 Identities=17% Similarity=0.359 Sum_probs=115.7
Q ss_pred HHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC--CCCCCCCCCHHHHCCCC
Q ss_conf 47767459489999-9999998741012365665128987267861688999999987237--76530022447740345
Q gi|254780877|r 565 EISKSVIGQSAAVE-SVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFD--DENSMIRIDMSEYMEKH 641 (853)
Q Consensus 565 ~l~~~v~gq~~ai~-~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~--~~~~lir~dMsey~e~~ 641 (853)
T Consensus 117 TFdnFVvG~sN~lA~aAA~~V--a----~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~ 190 (447)
T PRK00149 117 TFDNFVVGKSNRLAHAAALAV--A----ENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDF 190 (447)
T ss_pred CCCCCEECCCCHHHHHHHHHH--H----HCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHH
T ss_conf 032622269859999999999--8----3767677855897799887889999999999985899728995499999999
Q ss_pred CCCHHHCCCCHHCCCCCCCCCCHHHHC--CCCCEEEEHHHHHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEEC
Q ss_conf 320130477112035667742113221--56410220214414--98999999998404578879997783033155954
Q gi|254780877|r 642 SVSRLIGSPPGYVGYEEGGALTEAVRR--HPYQVVLFDEIEKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMT 717 (853)
Q Consensus 642 ~vs~LiGappGYvG~~~gg~Lte~vr~--~P~sVil~DEiEKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~T 717 (853)
T Consensus 191 v-~al~~-----------~~-~~~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~--l~~~--------~kqiv~t 247 (447)
T PRK00149 191 V-KALRN-----------NA-MEEFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNA--LHEN--------NKQIVIT 247 (447)
T ss_pred H-HHHHC-----------CC-HHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHH--HHHC--------CCEEEEE
T ss_conf 9-99851-----------86-99999999728854321488860557799999999999--9984--------9968995
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC--CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 851268764032679999999998628857726668--158628899899999999999999999985798999988999
Q gi|254780877|r 718 SNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD--EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795 (853)
Q Consensus 718 sN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid--~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~ 795 (853)
T Consensus 248 sd~~P~~l~----------------~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~-------~~~--~~l~~~v~ 302 (447)
T PRK00149 248 SDRPPKELE----------------GLEDRLRSRFEWGLTVDIEPPDLETRVAILQKKAE-------EEG--INLPNEVL 302 (447)
T ss_pred CCCCHHHCC----------------CCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH-------HCC--CCCCHHHH
T ss_conf 788967656----------------51177886763762651059999999999999999-------728--99998999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 999970898220621579999987
Q gi|254780877|r 796 DWLSCRGYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 796 ~~l~~~~~~~~~GaR~l~r~i~~~ 819 (853)
T Consensus 303 ~~iA~~~---~~nvR~LeGal~~l 323 (447)
T PRK00149 303 EFIAKRI---RSNIRELEGALNRL 323 (447)
T ss_pred HHHHHHC---CCCHHHHHHHHHHH
T ss_conf 9999712---68899999999999