HHsearch alignment for GI: 254780877 and conserved domain: PRK00409
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed.
Probab=95.49 E-value=0.26 Score=29.62 Aligned_cols=203 Identities=21% Similarity=0.257 Sum_probs=122.0
Q ss_pred HHHCCCCCCCEEEECCCCCCHHHHHH--HHHHHHHCCCCCHHH-CCCE-----EEEEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 96336777866895288740777999--999987348998444-5743-----788731354217454202454589999
Q gi|254780877|r 192 QVLSRRTKNNPVLIGDPGVGKTAIIE--GLASRIINGDIPESL-KGKR-----LMALDMGALIAGAKFRGEFEERLKSLL 263 (853)
Q Consensus 192 ~iL~r~~k~n~~lvGe~GvGKtaive--~la~~i~~~~vp~~l-~~~~-----i~~ld~~~l~ag~~~rg~~e~r~~~i~ 263 (853)
T Consensus 318 di~l~~~~~~liITGPNtGGKTv~LKtvgL~~lMaq~Gl~vPa~e~s~~~~f~~i~adIGD~QSie~~LSTFS~hm~~i~ 397 (780)
T PRK00409 318 DIELGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPAAEPSEIPVFKEVFADIGDEQSIEQSLSTFSGHMTNIV 397 (780)
T ss_pred EEEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCHHHHHHHHHHHH
T ss_conf 47866984189996898888563799999999999829997516898042346389982771213326524999999999
Q ss_pred HHHHHCCCCEEEEECCHHHHCCCCC--CCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCC
Q ss_conf 9986079976999636277302666--55433588887653124660489974489999973001113202311111577
Q gi|254780877|r 264 CEIRSEDGEIILFIDELHVLVGAGK--TDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEP 341 (853)
Q Consensus 264 ~~~~~~~~~~ilfide~h~~~gaG~--~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Ep 341 (853)
T Consensus 398 ~il~~a~~~sLVLlDE----lG~GTDP~EGaALa~aile~l~~~~-~~~i~TTH~~~lK~~a~~~~~~~n----as~~-F 467 (780)
T PRK00409 398 RILEKADENSLVLFDE----LGAGTDPDEGAALAISILDYLRKRG-AKIIATTHYKELKALKYNREGVEN----ASVE-F 467 (780)
T ss_pred HHHHHCCCCEEEEECC----CCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCCCEE----EEEE-E
T ss_conf 9997389980881232----3589984565999999999999779-979994776999999727998189----8888-7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 76789999999789865414961015899999863332024576747789999999998754102221457887999997
Q gi|254780877|r 342 TVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIIC 421 (853)
Q Consensus 342 s~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~ 421 (853)
T Consensus 468 D~-------~tl~PtYrl~~G~pG~S~A~~IA~rlG--------lp~---~ii~~A~~~l~~~~-------~~~~~li~~ 522 (780)
T PRK00409 468 DE-------ETLRPTYRLLIGIPGRSNAFEIAKRLG--------LPP---NIIEEAKKVYGEDK-------EKLNELIAS 522 (780)
T ss_pred CC-------CCCCCCEEEECCCCCCCHHHHHHHHHC--------CCH---HHHHHHHHHHCCCH-------HHHHHHHHH
T ss_conf 40-------237860687059997636999999929--------799---99999998856316-------589999999
Q ss_pred HHHHHHHH
Q ss_conf 44569998
Q gi|254780877|r 422 LKIEKEAL 429 (853)
Q Consensus 422 l~~e~~~L 429 (853)
T Consensus 523 l~~~~~~~ 530 (780)
T PRK00409 523 LEELEREL 530 (780)
T ss_pred HHHHHHHH
T ss_conf 99999999